sh3bgrl2 (sh3bgrl2,LOC107671851,LOC107701732,LOC107708803,LOC107571206,LOC106608335)


Basic Information

Item Value
gene id sh3bgrl2
gene name sh3bgrl2,LOC107671851,LOC107701732,LOC107708803,LOC107571206,LOC106608335
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 9822809 ~ 9830190 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224549.1
TAAGCGCTGCGAGTCTCGCGCTCCCGAGTGAGGTGCACTGATGGAGCGCGAGCGGCTTTATTATAGAACACCGGGCGCGCGCACTCACTTTAATTTCAAAGGGTGACGTTGACGTCACCGCAGGTCCAAAGTAGTCTATAGAAAGGGAGAGCGCAACATTTCCCAGCCTTCATTCTTCCGCGAGAGGATTACGATGGTCATCAGAGTATATATCGCCTCCTCCTCCGGGTCTGTCGCGGTGAAGAAACGTCAGCAGGCCATTGTGGGCTTTCTGGAGGCCAACCGTATCAGCTTTGAGGAGGTGGACATTACCATGCTGGAGGATCAGAGGCTCTGGATGTACCAGAACATTCCTGAGGAGAAACGACCTGAAAAGGGCAATCCTCTCCCGCCTCAGATCTTCAACGGAGACAGCTACTGCGGCGATTATGAAGATTTCTTCCAGTCTAAAGAGACGAATACAGTGTTCTCATTCCTCCGTCTGCCCCCTGTAAAGGACTCTGAATCCTAGACTGTGTCATTGACATTTCCCGTAGACTGAAACACTGTGGTTTTTGCCTCTTTTTCCTTTGATGTAACTTTCGTCCCCTGGTCTGAAGCCCTCACTGCCAGCAATGCTTTTGCCAAACACACGCTGCCCTCCAGCTAACAAACTACTCCTTACTCaaaa

Function

symbol description
sh3bgrl2 Predicted to enable SH3 domain binding activity. Predicted to be located in nucleus. Is expressed in several structures, including intestine; mouth; notochord; otic vesicle; and sensory system. Orthologous to human SH3BGRL2 (SH3 domain binding glutamate rich protein like 2).

NR:

description
SH3 domain-binding glutamic acid-rich-like protein 2

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0017124 SH3 domain binding molecular_function

KEGG:

id description
K23740 SH3BGR; SH3 domain-binding glutamic acid-rich protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224549.1 True 670 mRNA 0.51 4 9822809 9830190

Neighbor

gene id symbol gene type direction distance location
irak1bp1 irak1bp1,LOC107656539,LOC107708805,LOC107571105,LOC107701704,LOC107549065,LOC107756383 coding upstream 62192 9758867 ~ 9760617 (+)
tbx18 tbx18,LOC107708785,LOC107656541,LOC107756382,LOC107701724 coding upstream 117125 9696640 ~ 9705684 (+)
selenoi si:ch211-197l9.4,selenoi,LOC107656545,LOC107708808,LOC107571075,LOC107549067,LOC107701725,LOC107756381 coding upstream 163324 9649897 ~ 9659485 (+)
si:ch211-197l9.2 LOC107708809,LOC107756380,LOC107656534,LOC107549068,LOC107701723 coding upstream 174340 9635094 ~ 9648469 (+)
cables2a cables2a,LOC107656547,LOC107708813,LOC107756377,LOC107571009,LOC107549038,LOC107701719 coding upstream 207313 9601928 ~ 9615496 (+)
rps12 rps12,LOC107671850 coding downstream 4134 9834324 ~ 9837182 (+)
LOC122329334 NA coding downstream 4906 9835096 ~ 9835170 (+)
LOC122329332 NA coding downstream 5205 9835395 ~ 9835479 (+)
tbpl1 tbpl1,LOC107571264,LOC107756392,LOC107671848,LOC107549057,LOC107723755,LOC107701734 coding downstream 74033 9904223 ~ 9908862 (+)
myb myb,LOC107701741,LOC107549054,LOC107671892,LOC107756348,LOC107571350 coding downstream 165607 9995797 ~ 10005646 (+)
G156098 NA non-coding upstream 7500 9813217 ~ 9815309 (+)
G156096 NA non-coding upstream 14529 9802696 ~ 9808280 (+)
G156047 NA non-coding upstream 182983 9622479 ~ 9639826 (+)
G156034 NA non-coding upstream 238229 9584169 ~ 9584580 (+)
G155985 NA non-coding upstream 608355 9214140 ~ 9214454 (+)
G156109 NA non-coding downstream 50572 9880762 ~ 9973534 (+)
LOC122328703 NA non-coding downstream 54855 9885045 ~ 9888379 (+)
G156108 sgk1 non-coding downstream 91951 9922141 ~ 9923225 (+)
G156142 NA non-coding downstream 164256 9994446 ~ 9994653 (+)
G156168 nr4a1,LOC107671891,LOC107723761,LOC107572787,LOC107756405,LOC107701750,LOC107549046 non-coding downstream 304665 10134855 ~ 10145461 (+)
G156081 phip,LOC107656532,LOC107708770,LOC107549027 other upstream 53189 9683746 ~ 9769620 (+)
G155927 zgc:194189,LOC107570831,LOC107708788,LOC107681978,LOC107695725,LOC107586555,LOC107718823 other upstream 700416 9120884 ~ 9122393 (+)
lzic lzic,LOC107708836,LOC107718820,LOC107681991,LOC107570802,LOC107695771,LOC107586557 other upstream 721437 8941031 ~ 9101372 (+)
G155799 NA other upstream 1334168 8488086 ~ 8488641 (+)
LOC122328506 klhl14,LOC107677170,LOC107599684,LOC107554641,LOC107717384 other upstream 1489433 8321705 ~ 8333376 (+)
plagx plagx,LOC107723745,LOC107572778,LOC107756402,LOC107671865,LOC107549050,LOC107701746 other downstream 240590 10070780 ~ 10089818 (+)
LOC122328781 pifo other downstream 499661 10329851 ~ 10363818 (+)
LOC122328383 tbx15,tbx18,LOC107712261,LOC107708785,LOC107656541 other downstream 585473 10415663 ~ 10427162 (+)
LOC122328447 LOC107603155,LOC107707751,LOC107672009 other downstream 684789 10514979 ~ 10518751 (+)
LOC122329061 fkbp1ab,fkbp1a,LOC107707744,LOC107657066,LOC107747971,LOC108435222,LOC107559476,LOC100705189,LOC105013763,LOC101476936 other downstream 720907 10551097 ~ 10554720 (+)

Expression


Co-expression Network