noc2l (noc2l,LOC107737559,LOC107687416,LOC107716108,LOC107703058)


Basic Information

Item Value
gene id noc2l
gene name noc2l,LOC107737559,LOC107687416,LOC107716108,LOC107703058
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 13376444 ~ 13401670 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224557.1
tttacgcAACGTTAACCAAGAGATCAACTCAGCTGAGCTGCCGAAagcggtgcattgtgggtatCGCGTCCTTGCGCACGTTTCTTATCCAGCATGGCAGGGAAAAACAAGCGGAAATTGGAGGATCTCAGTGTGGATGAGTTCATGTTATCTGGGTTTGATTCTGGTGAGGAACATGATTGTGAAGAAGATGAGGAATCAACACAAAAGAAAGGGAAGATGAAGACGCCTGCACCTCAGAATACGTCTGTCAAAAAGCACGGCAAGGCGTCTGAGCACAAGGACCAGCTATCAGCCCTCAAGAGCAAAGACCCAGAGTTCTATGagtttttacaagaaaatgacCAGAAGCTCCTGAATTTTGACGACTCCGATAGCcttgaagatgaagatgaggaggatgaCGAAGAGGAGAGGATGTACCACAAACTCCCTTCTCAACTGGAGGATGCTGATGATGACGAAGACGACAAAGGGGAATCAGGGAAAAAGagtgagaaaaaagaaagtaccAAAGTCACAGAAGCAATGATTGAGAAATGGAGAACTGGACTCAGGaagGAGCCCACAGCAAAATTGGTTCGGGACATCACACAAGCCTTCAAGGCTGCCGTGGCTACAACGAAGGGGGACTCTGAGGAAAAGTGTCGATATACCATCTCAGACAGCGCAGTGTTCAATTCCCTCATCCTGTTCTGCATAAAGGACATGCATGCAGCTCTGAACAAAATGCTGAAGTTGAAAGCTCCAGAGAAAGGCCAGAAAAAATTAATACTTCCGTCTTCGAGCCCCAGGTGGCAGAAAAATCAGATTGATATTAAGATGTATATCGCTGGTGTTGTTCAGctCCTCTCCAGTTTAACCCAGTCTACAGTCGTAGCTGCAGTTCTCCGTCACGCCAACCAGATGGTGCCATACTACCTGTGTCTGCCAAAACAGTGCAGGCAGTTTCTCAAGAGTCTGATCaaacactggagcacgggagaGGAGACTGTGAGGGTCCTTGCCTTCCTGGCTCTCAACAAAATCTGCcgaaacaaacaggaaaactACCTAAACTCTGTTCTTAAGCAAATGTACATCGCCTACGTAAAGAACTGCAAGTTCACGTCACCCAACACTCTTCCCATGATTAATTTCATGCAGCGGACTCTTGCTGAGATGTACTCAATGGACACACAGATGTCCTACCAGCATGCCTTTATTTATATTCGTCAACTTGCCATCCACCTCAGGAGCGCCATTAATTTGAAGAAGAAGGAGACGTATCAGTCTGTGTATAACTGGCAGTATGTGCACTGTCTGTATCTGTGGTGTCGGGTGTTGAGCACCCTTTACCCGAGTGAGGTTTTGGAGCCGTTGATCTACCCACTGTGTCAAGTCATCATCGGCTGCATCAAgCTTGTGCCCATCTCTCGGTATTACCCTCTGCGACTGCATTGTGTTAGAGCGATCATCCTGCTGTGTGCCAACACCAAGACGTTCGTGCCCGCCCTGCCCTTCCTGCTAGAGATCCTCCAGCAGGAAGACTTCAATAAGAAACCAGGCCGCATGAGTATAAAGCCCATCAATTTTGCAGTGATCCTCAAACTCAGCAAGACCAATCTCCAAGAGAAGGCTTATAAGGACGGTCTAGTGGAGCAGTTGTATGACCTCATTTTGGAGTACTTCCACACACAGGCCTGCTCCGTTGGCTTTCCTGAACTGGCTTTGCCCACAATCATTCAGCTGAAAGCCTTCTTGAAGGAATGCAAAGTGGCCAATTACTGCAAGCAGATGCGCCAGCTGCTGGATAAGATACAGGAGAACTGCAGCTACATCACAGGGCGAAGGCAGAAAGCTACTTTTGGTGTGGCTGATGTCACAGCTGTGGCCGCCTGGGAGAAGCAGGTAGCAGAAGAAGGCACTCCTCTCACTAAATATTACAGCCAGTGGAAGAAACTTCGTGAAAAGGAGATTCAGTTGGAGATCTCTGGAAAAGAAAGGATGGAAGACTTGAATCTCCCTGAGATCAAACGCAAGAAGGctgaagaaaagaaagcagACAAGAAGGAGTTCAAGGGGCTTTTTGAGTCAgatagtgatgatgatgatgatgatgacgatgaccTGTTCAAATCCAAAGagGAAAAAGGTGACTCTGATGAAGATGACGAAGGCCTTGAGGACCTCTCAGACCTGAGCGATGATGATAAAGAGGGTCTAGATGACTTGGAGGATGATTCAGATGGTGACCAGAAGAAGCCCTCGTCTTCTAAAGGCAAAGCACCCAAGAAGATGTTAAGCACAGACCTGAAGGAGGTGGCTGAAGGAGATGAAGATATGGTTGAGGACCTGGAGCTCTCCGATCAGGACTAAAGTCACAGTGTTGCATCAGAGGCACATACCTATTTCACATCCAAACATGATTTATACCGTTAAAGCAGTAGCTAGCCAAGAAAAGGAAAATTTTTCGGTTCCCTTTAAGAGCCATGTACAGCCCCTGTTGTAGTAATTTCGTTTTTTTGCACcattgtattttataaagtgtgaaacaaaacaaattattcgAACCTTTCGTAAGGTTGTGAAATTTAAAAGACCTTATTAAAAACTCTGaactttgttttaaaacta

Function

symbol description
noc2l Predicted to enable histone binding activity and transcription corepressor activity. Predicted to be involved in negative regulation of histone acetylation; negative regulation of transcription by RNA polymerase II; and ribosomal large subunit biogenesis. Predicted to be located in nucleus. Predicted to be part of Noc1p-Noc2p complex and Noc2p-Noc3p complex. Predicted to be active in nucleolus and nucleoplasm. Is expressed in immature eye. Orthologous to human NOC2L (NOC2 like nucleolar associated transcriptional repressor).

NR:

description
nucleolar complex protein 2 homolog isoform X1

GO: NA

KEGG:

id description
K14833 NOC2; nucleolar complex protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224557.1 True 2616 mRNA 0.46 19 13376444 13401670

Neighbor

gene id symbol gene type direction distance location
ca6 ca6,LOC107737562,LOC107703061,LOC107591102,LOC107687477,LOC107593430 coding downstream 247806 13123448 ~ 13128638 (-)
spsb1 spsb1,LOC107716103,LOC107687410,LOC107703063,LOC103042472,LOC107591103,LOC107737563 coding downstream 296220 13067327 ~ 13080224 (-)
LOC122328487 LOC107717767,LOC107687461 coding downstream 435559 12936321 ~ 12940885 (-)
LOC122328520 LOC107591107,LOC107703065,LOC107737567,LOC107717766,LOC107593370 coding downstream 445631 12911070 ~ 12930813 (-)
phc2a LOC107737567,LOC107591107,LOC107703065,LOC107717766,LOC107593370 coding downstream 565875 12771790 ~ 12810569 (-)
LOC122328822 LOC107703053,LOC107737553,LOC107687419,LOC107591147 coding upstream 34872 13436542 ~ 13442457 (-)
her9 her9,LOC107716081,LOC107593950,LOC107687478,LOC107737700,LOC107591146,LOC107703052 coding upstream 91911 13493581 ~ 13495390 (-)
LOC122328742 rnf223,LOC107673070,LOC107716082,LOC107591144,LOC107593948,LOC107737699,LOC107687479 coding upstream 377355 13779025 ~ 13783742 (-)
arhgef19 arhgef19,LOC107673086,LOC107737548,LOC107591090,LOC107687425,LOC107716118 coding upstream 433386 13835056 ~ 13851039 (-)
ano11 ano11,ano7l1,LOC107737547,LOC107591089,LOC107716119,LOC107593934,LOC107687426,LOC107673051 coding upstream 450796 13852466 ~ 13868569 (-)
G157365 NA non-coding downstream 254418 13121813 ~ 13122026 (-)
G157364 NA non-coding downstream 255928 13119998 ~ 13120516 (-)
G157363 NA non-coding downstream 256891 13119183 ~ 13119553 (-)
G157361 NA non-coding downstream 258276 13117380 ~ 13118168 (-)
G157360 NA non-coding downstream 260313 13115910 ~ 13116131 (-)
G157765 NA non-coding upstream 32085 13433755 ~ 13435861 (-)
G157799 NA non-coding upstream 340587 13742257 ~ 13747171 (-)
G157813 NA non-coding upstream 371105 13772775 ~ 13773308 (-)
G157826 NA non-coding upstream 422323 13823993 ~ 13825589 (-)
G157863 NA non-coding upstream 656167 14057837 ~ 14075937 (-)
G157373 LOC107591099,LOC107703059,LOC107737560 other downstream 94117 13280256 ~ 13282327 (-)
G157367 NA other downstream 159036 13141078 ~ 13217408 (-)
G156985 NA other downstream 1451794 11922844 ~ 11924650 (-)
atp2b3b atp2b3b,atp2b3,LOC107737604,LOC107712727,LOC107672007,LOC107593407 other downstream 1518476 11763709 ~ 11857968 (-)
si:dkey-93l1.9 si:dkey-93l1.9,LOC107699586,LOC107593449,LOC107671978,LOC107699561,LOC107576394,LOC107737609 other downstream 1574812 11799922 ~ 11801632 (-)
zbtb48 LOC107673103,LOC107716144,LOC107591072,LOC107687447,LOC107737528 other upstream 821139 14222809 ~ 14233051 (-)
G157909 LOC107673054,LOC107737519,LOC107716153,LOC107591065 other upstream 925296 14326966 ~ 14330784 (-)
fitm2 LOC107673062,LOC107737511,LOC107568407,LOC107564660,LOC107716178,LOC107668335 other upstream 1168677 14570347 ~ 14589622 (-)
LOC122328902 LOC107737500,LOC107673074,LOC107695835,LOC107564653,LOC108275744 other upstream 1283220 14684890 ~ 15301682 (-)
LOC122328913 zgc:162898,c4h15orf61,LOC107738714,LOC107686305,LOC107583911,LOC107718314,LOC107596966,LOC107672207 other upstream 1645482 15047152 ~ 15048344 (-)

Expression


Co-expression Network