copz1 (copz1,LOC107664248)


Basic Information

Item Value
gene id copz1
gene name copz1,LOC107664248
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 18214578 ~ 18220380 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224588.1
TGCCCTTTTACCTCATGTCGTAAGCGGAAGTACACATACGCAGAAGTTCAATACGCGGAGGTTGAGCGAGCGACATCTGTACAGTGCGAGATGGATACGCTAATATTgGAGCCCTCTCTGTACACTGTTAAAGCTGTGCTGATTATGGACAATGATGGAGAGAGACTTTATGCTAAGTATTACGATGACACGTAACCCACAGTAAAAGAGCAGAAAGCCTTCGAGAAGAACATCTTCAACAAGACACACAGAACGGACAGTGAAATCGCATTGCTGGAGGGACTAACGGTCGTCTACAAGAGCAATATTGATCTATATTTTTACGTCATCGGCAGCTCCCATGAAAATGAGTTGATGCTTATGTCAGTGTTGAATTGTCTATTTGATTCCCTGAGCCAAATGTTGAGgaaaaatgtggaaaaaagagCCCTGCTTGAAAACATGGAGGGTCTTTTCCTGGCCGTTGACGAGATCGTTGATGGAGGCGTGATCCTGGAGAGCGACCCGCAGCAGGTGGTTCACCGCGTCGCTCTGAGGGGCGATGACGTGCCTCTGACAGAGCAGACAGTCACTCAGGTTCTACAGTCAGCTAAGGAGCAGATCAAATGGTCTCTACTCCGATAGGACGCTTCCGGTCCCGTTCCTGAACTGAGATGAGGAGAACAAATACGAGGCGACCACTTTCCATCACTACTGTCctatcttccttttttttttttttttttttttccttgagtGTTTTCTTGACTGTTAAAGTGCATATCCACTGAAAACCACTTGTAGTGTATCTCTCACTCGAAGATGAGACCAAGAACACGAGCATTTCAAAAGAATGTCAAGGCAGGAGGAAGAATATTTTGTTGTCGGGACTTTCTTTTTAAGGAAAAGTACCGGGgcgtgttgtttttttttttttttgtaatcccATTCCAGTAAGCGCTTGAATatatggctggttttgtgaaTGATATCACTGTTGTACTGTGAGATTTTCATTACGATTCATGTACATTCCAGTGGTTGATCTCGTTCTCTGTTTTTTCCCTCTGACCCTTGTTTGGATTGAAGTAAAGAAAGTTTCATTCTA

Function

symbol description
copz1 Acts upstream of or within lens development in camera-type eye. Predicted to be located in Golgi membrane and cytoplasmic vesicle. Predicted to be part of COPI vesicle coat. Orthologous to human COPZ1 (COPI coat complex subunit zeta 1).

NR:

description
PREDICTED: coatomer subunit zeta-1

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0030117 membrane coat cellular_component

KEGG:

id description
K20472 COPZ, RET3; coatomer subunit zeta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224588.1 True 1087 mRNA 0.44 9 18214578 18220380

Neighbor

gene id symbol gene type direction distance location
lima1a LOC107714990,LOC107664165,LOC107593956,LOC107706995,LOC107697921 coding downstream 37088 18162460 ~ 18177490 (-)
igfbp6b igfbp6b,LOC107714992,LOC107664167,LOC107593959,LOC107697925,LOC107599019,LOC105912701 coding downstream 90874 18120295 ~ 18123704 (-)
pip4k2ca pip4k2ca,LOC107714989,LOC107598997,LOC107664235,LOC107697923,LOC107593957 coding downstream 98252 18107885 ~ 18116326 (-)
gpr182 gpr182,LOC107664254,LOC107697920,LOC107593955,LOC107706991,LOC107599064 coding downstream 109458 18102311 ~ 18105120 (-)
tspan31 tspan31,tsn31,LOC107599072,LOC107593953 coding downstream 143615 18065270 ~ 18070963 (-)
hoxc3a LOC107714998,LOC107593965,LOC107664206,LOC107697835,LOC107706962 coding upstream 94453 18314833 ~ 18316762 (-)
hoxc4a hoxc4a,hoxc4,LOC107664204,LOC107714997,LOC107598886,LOC108433407,LOC103034018 coding upstream 96257 18316637 ~ 18330701 (-)
hoxc5a hoxc5a,LOC107664112,LOC107593967,LOC107664111,LOC107697940,LOC107715000,LOC107706972,LOC107598908 coding upstream 118669 18339049 ~ 18341234 (-)
hoxc8a hoxc8a,hoxc8,LOC107598875,LOC107697938,LOC107593970,LOC107664222,LOC107707008,LOC108433404 coding upstream 135281 18355661 ~ 18358381 (-)
hoxc10a hoxc10a,LOC107593968,LOC107664221,LOC107714961,LOC107706973,LOC107598838,LOC107697934 coding upstream 135818 18356198 ~ 18376163 (-)
G158952 NA non-coding downstream 8120 18206143 ~ 18206458 (-)
G158950 NA non-coding downstream 11126 18203036 ~ 18203452 (-)
G158949 NA non-coding downstream 13612 18200767 ~ 18200966 (-)
G158948 LOC107599665,LOC107664257,LOC107714993,LOC107697859,LOC107706997 non-coding downstream 18209 18195399 ~ 18196369 (-)
G158946 NA non-coding downstream 20054 18194252 ~ 18194524 (-)
G158953 LOC107714996 non-coding upstream 17517 18237897 ~ 18238532 (-)
G158955 NA non-coding upstream 24543 18244923 ~ 18246827 (-)
LOC122328626 NA non-coding upstream 201479 18421859 ~ 18456506 (-)
G158984 NA non-coding upstream 220270 18440650 ~ 18442479 (-)
G158980 LOC107707015,LOC107697945,LOC107593978,LOC107598797,LOC107715007,LOC107664110 non-coding upstream 339040 18559420 ~ 18563142 (-)
march9 march9,LOC107593952,LOC107664138,LOC107714987,LOC107706970,LOC107599679,LOC107697857,LOC107088728,LOC108433385,LOC103130462,LOC105930772 other downstream 155839 18045926 ~ 18058739 (-)
coq10a si:dkey-190g6.2,LOC107671896,LOC107715030,LOC107598614,LOC107697969,LOC102210977,LOC108425511,LOC102797363 other downstream 792061 17413703 ~ 17422517 (-)
G158609 NA other downstream 871193 17339267 ~ 17343385 (-)
slc48a1a slc48a1a,LOC107671836,LOC107598487,LOC107594008,LOC107756371,LOC107697869,LOC107757747 other downstream 1030193 17176625 ~ 17184385 (-)
G158336 LOC107716221,LOC107570608,LOC107586536,LOC106567035 other downstream 1855873 16355369 ~ 16358705 (-)
hnrnpa1b hnrnpa1b,LOC107664187,LOC107714994,LOC107707002 other upstream 11263 18231643 ~ 18235536 (-)
hoxc1a LOC107598919,LOC107707004,LOC107697929,LOC107594049,LOC107664160,LOC107714959 other upstream 75666 18296046 ~ 18302575 (-)
hoxc6a hoxc6a,LOC107593966,LOC107664205,LOC107714999,LOC107706971,LOC107697939,LOC107598897 other upstream 121954 18342334 ~ 18350347 (-)
G159076 LOC107715021,LOC107664216,LOC107593990,LOC107598736,LOC107697953,LOC107707026 other upstream 527011 18747391 ~ 18754712 (-)

Expression


Co-expression Network