LOC122328724 (ebp,LOC107672060,LOC107712744,LOC107657016)


Basic Information

Item Value
gene id LOC122328724
gene name ebp,LOC107672060,LOC107712744,LOC107657016
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 11516137 ~ 11517702 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224591.1
GTGATGGCGCGATGTTTCTGTAATTTCACAATGTAGTTTCAAAGAGCAGGTTTTTAGCACTTCATCGCCGTGCTCTCCACCTCCAAGAAGACAGTTACATGCAGAATAAAGGGTATCGCGGGAAATAATCACATTTCTACGATATTTCACAACTCACCAGAATGTTGAAGGAAGCAGACACTGTAAATCATCCCTATTGGCCACGCAACCTGTCCATTCCCAACTATGTGGCTAATGACCGTTCAATGTCAGAGATCCTGGTATTCCTGTTCTCTGTGTCTGGGATACTGCTGCTCGCCACCTGGTCACTGACTGGCCGTCAGGTGTCCGGAAGAAGTCTTGGCGGAGGGAGGAGGTTAGCTCTGTGCTGGTTCACCGTGTGCGGCTTCATCCATGGGGTCATCGAGGGATGGTTCTCTTTATACTACACCATCATACCCGAAGACCAGAGTTTCCTTTCTCAACTGTGGAAAGAATATTCCAAAGGAGACAGCAGATATGCGATAGCGGATAATTTCACTGTTAGCATGGAGACGGTGACCGCGTGCCTGTGGGGTCCCTTCAGTATATGGATTGTTTTGGCCTTCCTGTATAACCATTCTTACAGATTTGTCCTGCAGCTCATTGTGTCTCTAGGTCAGCTGTATGGTGCCGTCCTCTACTTCTTCACTGAGCACAGAAATGGATATATTCACAGCGAATACGGTCACCCCATCTATTTCTGGTTCTACTTTgtgtttatgaatgttttgtggATTGTCATTCCTTTCATTCTTATAGCAGACTCATGGTGTCAGCTATCTGCCTGCCAATCCATGTTTGATAAAGTAGCACATAAAGGCAAGTCTAAAAGAAGCTAGACGAGTAGACAATGGAAGAGATGTTAAAAAagtactgaaataaaacacttggGAATGTATACGTACACATATGTGAGGagataatatattttgaatgtaattttataataatagtgTCATTCCTGgaagaaaatgcaaaatgccGTAAGTGTAATGTGACATATTgattacagaaatgaaaatgttgattAAATGCTCAGAATAGTGCTCTAGTTTTTATGACACCGTTGCACTGTATCGGTTCTCTCTGCTCAGGTGCCTTTCTTCCTGTTGTATTTTATCAAATTGTTATATCTgaggttttattaaatgttgcaCCCCTTA

Function

symbol description
ebp Predicted to enable C-8 sterol isomerase activity and steroid delta-isomerase activity. Predicted to be involved in cholesterol biosynthetic process. Predicted to act upstream of or within sterol metabolic process. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Human ortholog(s) of this gene implicated in MEND syndrome; X-linked chondrodysplasia punctata 2; and chondrodysplasia punctata. Orthologous to human EBP (EBP cholestenol delta-isomerase).

NR:

description
PREDICTED: 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase-like

GO:

id name namespace
GO:0016125 sterol metabolic process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0047750 cholestenol delta-isomerase activity molecular_function

KEGG:

id description
K01824 EBP; cholestenol Delta-isomerase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224591.1 True 1184 mRNA 0.42 5 11516137 11517702

Neighbor

gene id symbol gene type direction distance location
pard6b pard6b,LOC107737628,LOC107560924,LOC107657018,LOC107712746,LOC107562464,LOC108436329,LOC107671939 coding downstream 8852 11490166 ~ 11507285 (-)
arfgef2 arfgef2,LOC107671990,LOC107737629,LOC107562465,LOC107741338,LOC108436330 coding downstream 27707 11466356 ~ 11488430 (-)
bcl2l1 bcl2l1,LOC107560925,LOC107737630,LOC107671991,LOC107741328,LOC107657020,LOC107576469 coding downstream 51227 11446999 ~ 11464910 (-)
wu:fa11c10 wu:fa11c10,LOC107672043,LOC107737632,LOC107560922,LOC107562466,LOC107741327,LOC107657022 coding downstream 87390 11411884 ~ 11428747 (-)
nsfl1c nsfl1c,LOC107737635,LOC107560918,LOC107741325,LOC107562467,LOC107657023 coding downstream 120664 11390561 ~ 11395473 (-)
trnah-gug_32 NA coding upstream 308 11518010 ~ 11518081 (-)
oard1 oard1,LOC107672023,LOC107712742,LOC107657014 coding upstream 12335 11530037 ~ 11531810 (-)
guca1b guca1b,LOC107657012,LOC107562461,LOC107560929,LOC107672062 coding upstream 14939 11532641 ~ 11536011 (-)
LOC122329255 klhdc8b,LOC107712738,LOC107671938,LOC106572099,LOC107570270 coding upstream 26828 11544530 ~ 11630976 (-)
tasorb LOC107737622,LOC107671998,LOC107712737,LOC107570279 coding upstream 120911 11638613 ~ 11651271 (-)
LOC122328925 NA non-coding downstream 139449 11376177 ~ 11376688 (-)
G156785 NA non-coding downstream 162309 11353159 ~ 11353828 (-)
G156762 NA non-coding downstream 271317 11242600 ~ 11244820 (-)
G156759 NA non-coding downstream 353118 11162664 ~ 11163019 (-)
G156726 LOC107737655 non-coding downstream 440176 11071410 ~ 11075961 (-)
G156812 NA non-coding upstream 21921 11539623 ~ 11540045 (-)
G156962 NA non-coding upstream 244738 11762440 ~ 11763023 (-)
G156971 NA non-coding upstream 263865 11781567 ~ 11782366 (-)
G156972 NA non-coding upstream 275901 11793603 ~ 11851710 (-)
G156978 NA non-coding upstream 537544 12055246 ~ 12061368 (-)
G156746 NA other downstream 410914 11100744 ~ 11105223 (-)
LOC122328798 fkbp1ab,fkbp1a,LOC107707744,LOC107657066,LOC107747971,LOC108435222,LOC107559476,LOC100705189,LOC105013763,LOC101476936 other downstream 837987 10675680 ~ 10678150 (-)
ankrd52a ankrd52a,ankrd52,LOC107594018,LOC107756410,LOC107549041,LOC108432261,LOC107671831,LOC107723718 other downstream 1130170 10218473 ~ 10385967 (-)
LOC122328546 rpl10 other upstream 223698 11741400 ~ 11746620 (-)
LOC122329329 NA other upstream 227560 11745262 ~ 11745395 (-)
atp2b3b atp2b3b,atp2b3,LOC107737604,LOC107712727,LOC107672007,LOC107593407 other upstream 246007 11763709 ~ 11857968 (-)
si:dkey-93l1.9 si:dkey-93l1.9,LOC107699586,LOC107593449,LOC107671978,LOC107699561,LOC107576394,LOC107737609 other upstream 282220 11799922 ~ 11801632 (-)
G156985 NA other upstream 405142 11922844 ~ 11924650 (-)

Expression


Co-expression Network