tardbpa (tardbpl,tardbp,LOC107570713,LOC107681961,LOC107695779,LOC107716231,LOC107586522,LOC107708842)


Basic Information

Item Value
gene id tardbpa
gene name tardbpl,tardbp,LOC107570713,LOC107681961,LOC107695779,LOC107716231,LOC107586522,LOC107708842
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 8919719 ~ 8924271 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224612.1
GTTTAGGGGGTCAGAGCGGTAACTGGATGCATTAGTCCACgcgttttctatatttttactaCTTTGCATCGCGCGTTTTAATCGCAATCGGTAGATAATCCAGTACAGTCGATGAATAGTTGTTTGGACGCGGTGACAATTGGCGGGAACAGGGTGCAGCGTTACGCGCCATTCATTTGTATCGTGCTCGCGGTTAGCAAGTAGCTTAGCTTAGCTAATGGCACCCCGCATTATTTGACGACGGTCGCACGTAAACAATAGACATCGCACTTGTTGCCGGCTAATTTGTGGTTGCGTTTACTTCTGGGGTCTTTCCGGTGCAGTAGTTTCGGTTTCAGCCCCGTCTATTGTCTTGTAGCTGAATTATTGATCGGCTCGGAAGCTGTTAGCACAGCTCGCGCTCTCGGTGTAAACATGACGGAGTGTTATATTCGCGTGGCGGAGGATGAGAACGAGGAGCCGATGGAGATCCCGTCCGAGGAGGACGGCACCGTGCTGCTCTCCACCGTCGCCGCGCAGTTTCCCGGTGCCTGCGGCCTGAGATACCGTAGCCCCGTTTCTCAGTGCATGAGAGGGGTCCGACTGGTGGAGGGGGTTCTTCATGCACCCGAATCAGACTGGGGCAATCTGGTGTACGTGGTCAATTATCCAAAAGATAACAAGAGGAAGATGGATGAAATGGATGCTGCATCGGCTGTGAAGATCAAGCGCGGTGTGCAGAAGACATCAGATTTGATTGTGCTTGGGTTGCCATGGAAAACAACAGAGCAAGACCTTAAAGATTACTTCAGCACCTTTGGAGAGGTCATCATGGTGCAGGTGAAAAGAGATGCAAAAACTGGAAACTCCAAAGGATTTGGCTTTGTAAGATTTACAGACTACGAAACACAAGTAAAAGCCATGTCCCAGCGGCATATGATTGATGGAAGATGGTGCGACTGCAAGCTTCCCAACTCAAAGTATTTCCTGGAACAGGCTGGCCCGGATGAGCCTATGAGAAGCAGGAAAGTTTTTGTGGGCCGCTGCACCGAGGACATGACAGCCGATGAGCTTAGACAGTTTTTTATGCAGTACGGCGAAGTCACAGACGTGTTCATTCCCAAACCTTTCCGAGCCTTTGCCTTCGTCACCTTTGCTGACGATCAGGTTGCCCAGTCTCTGTGCGGTGAGGACCTGATCATCAAAGGAACCAGCGTGCACATCTCCAACGCTGAGCCTAAGCACAATAATAGTAGGCAAATGATGGATCGTGGGCGGTTCGGGGGGTTTGGGGGGCAGGGCTTTGGTAGTAGTCGCAGTCCCAACAGCAATGTGAATTTTGGGGCGCTTAGCTTGAATCCAGCCATGATGGCAGCGGCTCAGGCAGCCCTTCAGAGTAGCTGGGGCATGATGGGAATGCTGGCCAGTCAGCAGAATCAGACAGCCGCTTCCGGCACAACCCCTAGCGGACAGAACAGCGGTAGTAGAGATCAGAACCAGAGTTACAACACAAGCAGCAATAACTACAATACCGGCAGCTCAGCTAGTCTCGGGTGGGGGCCGGGAACCAATTCAGGCTCAAGCAGTGGGTTCAACTCCGGTTTTGGATCTAGCATGGAGACAAAGTCCAGCTGGGGAATGTAGAGAGATTTCAGTTGGGTTTTGAAGTATCCTATTACCTAGATGGTAAGTATTTTAAGAGAAGAAAGTTTAGTCAGACATTATGTCCCTTCAATATTTGCCTTTGATTTTGTAAAACTGAATGTTCTTCGTATACATATAATGATTgctctttaattttaatttagagtGGTTGAAATTATTAGgaatgaaatgaacactaaGTTTTTTCCCTTAtggatataatttattttatgtcaggCATTATTTCAGTATGCCCACATATCTGAGCATCTGTTACCATTTCAGTGCCCTCAACGTACAGTACATTTAAAGATGCTTCATGTGGAAAGCcatttgagttgtgtttttttccctcaacgTTTTTTATGGTCAAGCCTTCATAAATCTCTTCTACAGTTCATCACCTCTTTTCCAATTTCCGGGAAGAAGCCCCTCGTTGGCCGCAATGTTCGAGCGATCTCAGTATCAGTTCCCTTCTTCCCAT
>XM_043224613.1
AGTTTAGGGGGTCAGAGCGGTAACTGGATGCATTAGTCCACgcgttttctatatttttactaCTTTGCATCGCGCGTTTTAATCGCAATCGGTAGATAATCCAGTACAGTCGATGAATAGTTGTTTGGACGCGGTGACAATTGGCGGGAACAGGGTGCAGCGTTACGCGCCATTCATTTGTATCGTGCTCGCGGTTAGCAAGTAGCTTAGCTTAGCTAATGGCACCCCGCATTATTTGACGACGGTCGCACGTAAACAATAGACATCGCACTTGTTGCCGGCTAATTTGTGGTTGCGTTTACTTCTGGGGTCTTTCCGGTGCAGTAGTTTCGGTTTCAGCCCCGTCTATTGTCTTGTAGCTGAATTATTGATCGGCTCGGAAGCTGTTAGCACAGCTCGCGCTCTCGGTGTAAACATGACGGAGTGTTATATTCGCGTGGCGGAGGATGAGAACGAGGAGCCGATGGAGATCCCGTCCGAGGAGGACGGCACCGTGCTGCTCTCCACCGTCGCCGCGCAGTTTCCCGGTGCCTGCGGCCTGAGATACCGTAGCCCCGTTTCTCAGTGCATGAGAGGGGTCCGACTGGTGGAGGGGGTTCTTCATGCACCCGAATCAGACTGGGGCAATCTGGTGTACGTGGTCAATTATCCAAAAGATAACAAGAGGAAGATGGATGAAATGGATGCTGCATCGGCTGTGAAGATCAAGCGCGGTGTGCAGAAGACATCAGATTTGATTGTGCTTGGGTTGCCATGGAAAACAACAGAGCAAGACCTTAAAGATTACTTCAGCACCTTTGGAGAGGTCATCATGGTGCAGGTGAAAAGAGATGCAAAAACTGGAAACTCCAAAGGATTTGGCTTTGTAAGATTTACAGACTACGAAACACAAGTAAAAGCCATGTCCCAGCGGCATATGATTGATGGAAGATGGTGCGACTGCAAGCTTCCCAACTCAAAGTATTTCCTGGAACAGGCTGGCCCGGATGAGCCTATGAGAAGCAGGAAAGTTTTTGTGGGCCGCTGCACCGAGGACATGACAGCCGATGAGCTTAGACAGTTTTTTATGCAGTACGGCGAAGTCACAGACGTGTTCATTCCCAAACCTTTCCGAGCCTTTGCCTTCGTCACCTTTGCTGACGATCAGGTTGCCCAGTCTCTGTGCGGTGAGGACCTGATCATCAAAGGAACCAGCGTGCACATCTCCAACGCTGAGCCTAAGCACAATAATAGTAGGCAAATGATGGATCGTGGGCGGTTCGGGGGGTTTGGGGGGCAGGGCTTTGGTAGTAGTCGCAGTCCCAACAGCAATGTGAATTTTGGGGCGCTTAGCTTGAATCCAGCCATGATGGCAGCGGCTCAGGCAGCCCTTCAGAGTAGCTGGGGCATGATGGGAATGCTGGCCAGTCAGCAGAATCAGACAGCCGCTTCCGGCACAACCCCTAGCGGACAGAACAGCGGTAGTAGAGATCAGAACCAGAGTTACAACACAAGCAGCAATAACTACAATACCGGCAGCTCAGCTAGTCTCGGGTGGGGGCCGGGAACCAATTCAGGCTCAAGCAGTGGGTTCAACTCCGGTTTTGGATCTAGCATGGAGACAAAGTCCAGCTGGGGAATGTAGAGAGATTTCAGTTGGGTTTTGAAGTATCCTATTACCTAGATGTTCATCACCTCTTTTCCAATTTCCGGGAAGAAGCCCCTCGTTGGCCGCAATGTTCGAGCGATCTCAGTATCAGTTCCCTTCTTCCCAT
>XM_043224614.1
CAGTTTAGGGGGTCAGAGCGGTAACTGGATGCATTAGTCCACgcgttttctatatttttactaCTTTGCATCGCGCGTTTTAATCGCAATCGGTAGATAATCCAGTACAGTCGATGAATAGTTGTTTGGACGCGGTGACAATTGGCGGGAACAGGGTGCAGCGTTACGCGCCATTCATTTGTATCGTGCTCGCGGTTAGCAAGTAGCTTAGCTTAGCTAATGGCACCCCGCATTATTTGACGACGGTCGCACGTAAACAATAGACATCGCACTTGTTGCCGGCTAATTTGTGGTTGCGTTTACTTCTGGGGTCTTTCCGGTGCAGTAGTTTCGGTTTCAGCCCCGTCTATTGTCTTGTAGCTGAATTATTGATCGGCTCGGAAGCTGTTAGCACAGCTCGCGCTCTCGGTGTAAACATGACGGAGTGTTATATTCGCGTGGCGGAGGATGAGAACGAGGAGCCGATGGAGATCCCGTCCGAGGAGGACGGCACCGTGCTGCTCTCCACCGTCGCCGCGCAGTTTCCCGGTGCCTGCGGCCTGAGATACCGTAGCCCCGTTTCTCAGTGCATGAGAGGGGTCCGACTGGTGGAGGGGGTTCTTCATGCACCCGAATCAGACTGGGGCAATCTGGTGTACGTGGTCAATTATCCAAAAGATAACAAGAGGAAGATGGATGAAATGGATGCTGCATCGGCTGTGAAGATCAAGCGCGGTGTGCAGAAGACATCAGATTTGATTGTGCTTGGGTTGCCATGGAAAACAACAGAGCAAGACCTTAAAGATTACTTCAGCACCTTTGGAGAGGTCATCATGGTGCAGGTGAAAAGAGATGCAAAAACTGGAAACTCCAAAGGATTTGGCTTTGTAAGATTTACAGACTACGAAACACAAGTAAAAGCCATGTCCCAGCGGCATATGATTGATGGAAGATGGTGCGACTGCAAGCTTCCCAACTCAAAGGCTGGCCCGGATGAGCCTATGAGAAGCAGGAAAGTTTTTGTGGGCCGCTGCACCGAGGACATGACAGCCGATGAGCTTAGACAGTTTTTTATGCAGTACGGCGAAGTCACAGACGTGTTCATTCCCAAACCTTTCCGAGCCTTTGCCTTCGTCACCTTTGCTGACGATCAGGTTGCCCAGTCTCTGTGCGGTGAGGACCTGATCATCAAAGGAACCAGCGTGCACATCTCCAACGCTGAGCCTAAGCACAATAATAGTAGGCAAATGATGGATCGTGGGCGGTTCGGGGGGTTTGGGGGGCAGGGCTTTGGTAGTAGTCGCAGTCCCAACAGCAATGTGAATTTTGGGGCGCTTAGCTTGAATCCAGCCATGATGGCAGCGGCTCAGGCAGCCCTTCAGAGTAGCTGGGGCATGATGGGAATGCTGGCCAGTCAGCAGAATCAGACAGCCGCTTCCGGCACAACCCCTAGCGGACAGAACAGCGGTAGTAGAGATCAGAACCAGAGTTACAACACAAGCAGCAATAACTACAATACCGGCAGCTCAGCTAGTCTCGGGTGGGGGCCGGGAACCAATTCAGGCTCAAGCAGTGGGTTCAACTCCGGTTTTGGATCTAGCATGGAGACAAAGTCCAGCTGGGGAATGTAGAGAGATTTCAGTTGGGTTTTGAAGTATCCTATTACCTAGATGGTAAGTATTTTAAGAGAAGAAAGTTTAGTCAGACATTATGTCCCTTCAATATTTGCCTTTGATTTTGTAAAACTGAATGTTCTTCGTATACATATAATGATTgctctttaattttaatttagagtGGTTGAAATTATTAGgaatgaaatgaacactaaGTTTTTTCCCTTAtggatataatttattttatgtcaggCATTATTTCAGTATGCCCACATATCTGAGCATCTGTTACCATTTCAGTGCCCTCAACGTACAGTACATTTAAAGATGCTTCATGTGGAAAGCcatttgagttgtgtttttttccctcaacgTTTTTTATGGTCAAGCCTTCATAAATCTCTTCTACAGTTCATCACCTCTTTTCCAATTTCCGGGAAGAAGCCCCTCGTTGGCCGCAATGTTCGAGCGATCTCAGTATCAGTTCCCTTCTTCCCAT
>XM_043224615.1
TTAGGGGGTCAGAGCGGTAACTGGATGCATTAGTCCACgcgttttctatatttttactaCTTTGCATCGCGCGTTTTAATCGCAATCGGTAGATAATCCAGTACAGTCGATGAATAGTTGTTTGGACGCGGTGACAATTGGCGGGAACAGGGTGCAGCGTTACGCGCCATTCATTTGTATCGTGCTCGCGGTTAGCAAGTAGCTTAGCTTAGCTAATGGCACCCCGCATTATTTGACGACGGTCGCACGTAAACAATAGACATCGCACTTGTTGCCGGCTAATTTGTGGTTGCGTTTACTTCTGGGGTCTTTCCGGTGCAGTAGTTTCGGTTTCAGCCCCGTCTATTGTCTTGTAGCTGAATTATTGATCGGCTCGGAAGCTGTTAGCACAGCTCGCGCTCTCGGTGTAAACATGACGGAGTGTTATATTCGCGTGGCGGAGGATGAGAACGAGGAGCCGATGGAGATCCCGTCCGAGGAGGACGGCACCGTGCTGCTCTCCACCGTCGCCGCGCAGTTTCCCGGTGCCTGCGGCCTGAGATACCGTAGCCCCGTTTCTCAGTGCATGAGAGGGGTCCGACTGGTGGAGGGGGTTCTTCATGCACCCGAATCAGACTGGGGCAATCTGGTGTACGTGGTCAATTATCCAAAAGATAACAAGAGGAAGATGGATGAAATGGATGCTGCATCGGCTGTGAAGATCAAGCGCGGTGTGCAGAAGACATCAGATTTGATTGTGCTTGGGTTGCCATGGAAAACAACAGAGCAAGACCTTAAAGATTACTTCAGCACCTTTGGAGAGGTCATCATGGTGCAGGTGAAAAGAGATGCAAAAACTGGAAACTCCAAAGGATTTGGCTTTGTAAGATTTACAGACTACGAAACACAAGTAAAAGCCATGTCCCAGCGGCATATGATTGATGGAAGATGGTGCGACTGCAAGCTTCCCAACTCAAAGTATTTCCTGGAACAGGCTGGCCCGGATGAGCCTATGAGAAGCAGGAAAGTTTTTGTGGGCCGCTGCACCGAGGACATGACAGCCGATGAGCTTAGACAGTTTTTTATGCAGTACGGCGAAGTCACAGACGTGTTCATTCCCAAACCTTTCCGAGCCTTTGCCTTCGTCACCTTTGCTGACGATCAGGTTGCCCAGTCTCTGTGCGGTGAGGACCTGATCATCAAAGGAACCAGCGTGCACATCTCCAACGCTGAGCCTAAGCACAATAATATTCATCACCTCTTTTCCAATTTCCGGGAAGAAGCCCCTCGTTGGCCGCAATGTTCGAGCGATCTCAGTATCAGTTCCCTTCTTCCCATGTGTAAATGCTTTGCCATCAAAGAGCACAGCTTCACTCTGCATATACTGTGTTAGACGGGACGTTGGACTCGGCTGGCCCAGGTTTACCTCAGAACCCTGAGTGAAGTCAAAAATGGGAGAGCTGAAGACTGAAGTTCACACAGTCCATCTGTGGAGACTGCTGCTGTATGCCTTTAACCTGAAAAGGGACTACGTCACTTCACTGTAACCAGATTTCCCTGGATTCCCCTTTTTGAAATTTCAATGGACAATTCCCAATTGGCCCGGAGTGCATGACTAAAGACGGTCCTTGGCAATCTAAAAGCAGAGTTTAAACCAGTGTGTTTGTGGATCAGTCCCATTGCAAATGACTTAATGTCCATGCTCGTGTGTTTCAAGCTGTTTTACGCAAGACATCAATGCAGTCATTGATCTTgcttttaagtctttttttctgtttgattgCTTTTACATGATCTGTCCCACTGTAAATATAGTTTAGTGAAAGTTGAAAAGGCCTATTTTTCATACAGTGTCCTGTTGTGGGTGAACAGATAGGATTTTGTGAGTGGGGTTTGTGTTATGACTTGAATCACTGGCAGGATTTCCATTTttcaaaatacttaataaacgtACACAGAGGAActgtatctgtttttatttttacctgaaAGTTtgtgtaattgtaaaatgttgGTGGTTtgaagtgtaaaaaaacaagtgcTGAATTTAACCTACAGTGCTGGTTTTAGTATAACACAAACATACTATTTAGTAGTTTTGCtgtttgtcttgtttgtgtAATATCAGTATGAGAACTGCAGatagttttacttaaaataactgctgaatataatgttaaagaatgaattttCTTACTAAACttgaacaatttaataataaactttaaagTCCTAGTTTATTGCTTCTGAGGTTTAACCTGCAATGTAATCTTTTCTCTCATAAATAAATCCTTCAGTAAACTTA

Function

symbol description
tardbp Enables double-stranded DNA binding activity; identical protein binding activity; and mRNA 3'-UTR binding activity. Involved in several processes, including negative regulation by host of viral transcription; nuclear inner membrane organization; and regulation of mRNA stability. Located in nucleoplasm. Implicated in Parkinson's disease; amyotrophic lateral sclerosis; amyotrophic lateral sclerosis type 10; and motor neuron disease. Biomarker of Lewy body dementia; neurodegenerative disease (multiple); and progressive supranuclear palsy.

NR:

description
PREDICTED: TAR DNA-binding protein 43 isoform X1

GO:

id name namespace
GO:0007626 locomotory behavior biological_process
GO:0007409 axonogenesis biological_process
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K23600 TARDBP, TDP43; TAR DNA-binding protein 43

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224612.1 False 2107 mRNA 0.48 5 8919721 8922523
XM_043224613.1 False 1754 mRNA 0.51 6 8919720 8922523
XM_043224614.1 False 2094 mRNA 0.48 5 8919719 8922523
XM_043224615.1 True 2284 mRNA 0.45 7 8919723 8924271

Neighbor

gene id symbol gene type direction distance location
pex14 pex14,LOC107681981,LOC107708844,LOC107716227,LOC107586529,LOC107695784 coding upstream 229886 8629204 ~ 8689833 (+)
LOC122329212 LOC107732057,LOC107718040,LOC107555247,LOC107677163,LOC107599733,LOC107667194 coding upstream 565809 8351800 ~ 8353910 (+)
LOC122328648 abcd4,LOC107667197,LOC107677172 coding upstream 577940 8334954 ~ 8341779 (+)
LOC122329211 ccdc178,LOC107555255,LOC107667113,LOC107599731 coding upstream 611955 8281226 ~ 8307764 (+)
ntsr1 ntsr1,LOC107559468,LOC107747990,LOC107707740,LOC107671946,LOC107657007,LOC107603109 coding upstream 744200 8156193 ~ 8175519 (+)
aurkaip1 LOC107695745,LOC107571831,LOC107708787,LOC107681958,LOC107578281,LOC107718821 coding downstream 220749 9145020 ~ 9147322 (+)
mxra8b LOC107708825,LOC107681995,LOC107570868,LOC107718822 coding downstream 223652 9147923 ~ 9155012 (+)
dvl1a dvl1a,LOC107708824,LOC107570850 coding downstream 232223 9156494 ~ 9186875 (+)
tnfrsf9a LOC107708826,LOC107656554 coding downstream 265103 9189374 ~ 9193433 (+)
uts2a LOC107571861,LOC107708786,LOC107656544,LOC107695762,LOC107718818 coding downstream 287115 9211386 ~ 9212859 (+)
LOC122328608 NA non-coding upstream 218897 8698178 ~ 8700822 (+)
G155830 NA non-coding upstream 228619 8690885 ~ 8691100 (+)
G155829 NA non-coding upstream 290654 8628793 ~ 8629065 (+)
G155824 NA non-coding upstream 294083 8624905 ~ 8625636 (+)
G155823 NA non-coding upstream 294930 8624130 ~ 8624789 (+)
G155851 NA non-coding downstream 5473 8929744 ~ 8931849 (+)
G155894 ube4b non-coding downstream 80771 9005042 ~ 9006738 (+)
G155868 tmem201 non-coding downstream 204429 9128700 ~ 9131075 (+)
G155860 slc25a33,LOC107695765,LOC107708828,LOC107681985 non-coding downstream 211145 9135416 ~ 9138190 (+)
G155984 NA non-coding downstream 288884 9213155 ~ 9213707 (+)
G155799 NA other upstream 431078 8488086 ~ 8488641 (+)
LOC122328506 klhl14,LOC107677170,LOC107599684,LOC107554641,LOC107717384 other upstream 586343 8321705 ~ 8333376 (+)
tcea2 tcea2,LOC107681409,LOC107551521,LOC107705683,LOC107571665,LOC107666524 other upstream 1614185 7298360 ~ 7305534 (+)
G155561 NA other upstream 1680800 7225994 ~ 7238919 (+)
si:ch211-220i18.4 LOC107551506,LOC107666586,LOC107559855,LOC107681367,LOC107705652,LOC108275527,LOC107100285 other upstream 2321187 6592602 ~ 6598532 (+)
lzic lzic,LOC107708836,LOC107718820,LOC107681991,LOC107570802,LOC107695771,LOC107586557 other downstream 16760 8941031 ~ 9101372 (+)
G155927 zgc:194189,LOC107570831,LOC107708788,LOC107681978,LOC107695725,LOC107586555,LOC107718823 other downstream 196613 9120884 ~ 9122393 (+)
G156081 phip,LOC107656532,LOC107708770,LOC107549027 other downstream 759475 9683746 ~ 9769620 (+)
plagx plagx,LOC107723745,LOC107572778,LOC107756402,LOC107671865,LOC107549050,LOC107701746 other downstream 1146509 10070780 ~ 10089818 (+)
LOC122328781 pifo other downstream 1405580 10329851 ~ 10363818 (+)

Expression


Co-expression Network