LOC122328734 (sdcbp2,LOC107657068,LOC107672005)


Basic Information

Item Value
gene id LOC122328734
gene name sdcbp2,LOC107657068,LOC107672005
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 10555276 ~ 10566657 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224618.1
CAAAAAGAAATACACACGCACGTACTTTCTCGAGATCACCTCCCCTCTGTTCACTTCACCGCACCAACCTAAAGGGGAAAAGAGTCCCGTTTACTGTGCTCGGCTTGTTTACATTCTTCCCCATCACATTTACCATATTCTTCAGAAGTCAGTCGTCAGAAAGCAGGAAGgATGTCATTGTATCCATCCCTAGAGGACCTTAAAGTGGACAAGGTCATTAGGGCACAGTCCCAGTTTGCCAATGCCACCTCCAGCACCCCAGCCATCACTCAGGGTGTTTACCAGCCACAGCCTGCCACACAGGGGATGCCAAGCTCAGCTCTGTATCCCAATCTGGAGGAGCTGGGAGACTATATGGGCCTGAGTCTGAACAGCGATGAGGTCCAGAGAAACCTGGCGCTGGTCCCGGTGGCTGACAATCAAGTGGCAGTGCCAAGTTCTGTGGGTGGCATGGTGCGGCCCGTGACCGGTGCAGACGTGGGCATCAGGAGGGCAGAGATTCGTCCAGGTCTTCGGGAGGTCATCATCTGCAAAGACCAGGAAGGAAAGGTCGGGCTTCGACTCCGAGATATTGATAATGGAGTGTTTGTCCAGCTGGTGCAGGCGAACTCTCCTGCGGCGTTGGGTGGCCTGCGTTTTGGAGATCAGGTTCTGCAGATCAATGGGCAGAACGTTGCTGGCTGGAGCTCAGATAAGGCCCACAAAGCTCTGAAGGCAGCAGCTGAACAGCGCATCGAGCTCATTGTCCGTGACAGACCATTCCAGCGTACAGTCACAATGCATAAGGACAGCTCTGGCCATGTGGGCTTCATCTTCAAATCTGGACGAATCACATCTCTAGTGAAGGATGGTTCTGCTGCCCGCAATGGTTTGCTCACCGAGCACTACATCTGTGAGATCAACGGCCAGAACGTCATCGGACTCAAGGACACTCAGATTAAAGACATCCTCACCACATCTCCCACTGCCATGACCATCACCATCATGCCTAAATTTATCTACGAACACATGATTAAgaaGATGTCAAGCGGCCTGTTGAAGTCCTCCATGGATCACTCTGTGCCTGAGGTCTGAACACAggagaccacacacacacagcccctTCCACAATGCCTACAATCTCTTGCCTTCCCATTGGAGCCTTCCACAACATGGGTCGTCTATCACTGATTGGATAAACCTCCTCAATCACATTCATTTATAACATGTAAAACTGCCTTTTTCTATT

Function

symbol description
sdcbp2 Enables phosphatidylinositol-3,4-bisphosphate binding activity and syndecan binding activity. Acts upstream of or within several processes, including epiboly involved in gastrulation with mouth forming second; response to hypoxia; and synapse assembly. Predicted to be active in cytoplasm and plasma membrane. Is expressed in gill; oocyte; and spinal cord. Orthologous to several human genes including SDCBP2 (syndecan binding protein 2).

NR:

description
PREDICTED: syntenin-1-like

GO:

id name namespace
GO:0045545 syndecan binding molecular_function

KEGG:

id description
K17254 SDCBP; syntenin-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224618.1 True 1228 mRNA 0.51 10 10555276 10566657

Neighbor

gene id symbol gene type direction distance location
LOC122329231 LOC107656551,LOC107708819,LOC107570956 coding upstream 105945 10447808 ~ 10449331 (+)
LOC122328600 pcmtd2,LOC107708816,LOC107570992,LOC107701717,LOC107756374,LOC107656550,LOC108433859 coding upstream 122773 10429277 ~ 10432503 (+)
LOC122329277 ankrd52a,ankrd52,LOC107594018,LOC107756410,LOC107549041,LOC108432261,LOC107671831 coding upstream 173886 10368453 ~ 10381390 (+)
LOC122329250 si:dkey-261h17.1 coding upstream 233269 10316085 ~ 10322007 (+)
LOC122329223 NA coding upstream 298048 10247911 ~ 10257228 (+)
LOC122328564 LOC107707753,LOC107672006,LOC107603149,LOC107657067,LOC107559477,LOC107747970 coding downstream 80306 10646963 ~ 10658747 (+)
commd7 commd7,LOC107671961,LOC107603136,LOC107747977,LOC107719919,LOC107563668 coding downstream 199205 10765862 ~ 10772199 (+)
nol4lb nol4lb,nol4l,LOC107672011,LOC107563666,LOC107657055 coding downstream 220227 10786884 ~ 10870751 (+)
srms zgc:194282,srms,LOC107672012,LOC107560891,LOC107657057,LOC107747981,LOC108435233,LOC108276248,LOC107563676 coding downstream 308167 10874824 ~ 10884303 (+)
ptk6b LOC107719912,LOC107672013,LOC107747980,LOC107657056 coding downstream 317809 10884466 ~ 10892545 (+)
G156387 LOC107747988,LOC107671949,LOC107707743,LOC107603135 non-coding upstream 34509 10520142 ~ 10520767 (+)
G156171 NA non-coding upstream 166650 10387868 ~ 10388626 (+)
G156169 NA non-coding upstream 167776 10386960 ~ 10387500 (+)
G156217 NA non-coding upstream 209222 10263990 ~ 10346054 (+)
LOC122328771 NA non-coding upstream 298870 10254786 ~ 10256406 (+)
G156401 NA non-coding downstream 6557 10573214 ~ 10655710 (+)
G156398 NA non-coding downstream 100204 10666861 ~ 10674148 (+)
G156413 NA non-coding downstream 129645 10696302 ~ 10696558 (+)
G156417 NA non-coding downstream 136072 10702729 ~ 10703093 (+)
G156431 NA non-coding downstream 160261 10726918 ~ 10727164 (+)
LOC122329061 fkbp1ab,fkbp1a,LOC107707744,LOC107657066,LOC107747971,LOC108435222,LOC107559476,LOC100705189,LOC105013763,LOC101476936 other upstream 556 10551097 ~ 10554720 (+)
LOC122328447 LOC107603155,LOC107707751,LOC107672009 other upstream 36525 10514979 ~ 10518751 (+)
LOC122328383 tbx15,tbx18,LOC107712261,LOC107708785,LOC107656541 other upstream 128114 10415663 ~ 10427162 (+)
LOC122328781 pifo other upstream 191458 10329851 ~ 10363818 (+)
plagx plagx,LOC107723745,LOC107572778,LOC107756402,LOC107671865,LOC107549050,LOC107701746 other upstream 465458 10070780 ~ 10089818 (+)
G156414 LOC107707743,LOC107747988,LOC107671949,LOC107559475 other downstream 132141 10698798 ~ 10700895 (+)
G156497 trim101,LOC107671958,LOC107560876,LOC107719918,LOC107656995,LOC107747989 other downstream 347247 10913904 ~ 10923988 (+)
LOC122328437 LOC107737657,LOC107560901,LOC107671993,LOC108435244,LOC108275530 other downstream 510497 11077154 ~ 11085604 (+)
G156586 NA other downstream 607764 11174421 ~ 11177033 (+)
kctd6b kctd6b,rpl10,rl10,LOC107671957,LOC107570288,LOC107737715,LOC107560935,LOC108436290,LOC103399204,LOC107672042 other downstream 1130757 11697414 ~ 11746570 (+)

Expression


Co-expression Network