zgc:158296 (LOC107737724,LOC107671977,LOC107562459,LOC107657001,LOC107741322)


Basic Information

Item Value
gene id zgc:158296
gene name LOC107737724,LOC107671977,LOC107562459,LOC107657001,LOC107741322
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 11322655 ~ 11324876 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224640.1
TTCTTCACTGGGTACAGACACTTCTACTCACTAGACTATGGCAGAAAGAGTGAGGTCACACCTCCACACCGAAAGACGCTCCCCTCCCAGCAATAGCTTGATAAAGGCCACAGATTCATCTGTTAGATGTGGGCAACAAGACAATTTATGGAGATTATCAGCATCTGTCAGATAGATCGAAACTGTAGCTTTTGCTGAATTTGCTTTGTTGACCTGGACAgaattacagtttatttttggaCCGGGACCGCTGAATAGGTCAAAATGATGTCAGATGAGTATTTGGTGGAGTGTAACATcaacgacgacgacgacgaggATGACgatgacgacgatgatgattatgattatgattatgaagtGAAGAAGATCCACCCGTCTCCACCTCCTCCCCCACAGTTCTCCTCCACCCCGTCCCTCACTCAGTGTGACATCAGGGACCCCTGCGGCCTGAACAAACACCTGAAGATAGAGTTCAGCGACGTTGTGGCGGAGCCCGCGTCCACGCACAGCTACGACCGCGTGTGGGTGTACAGCGGCATCGGCTTCGAGTCCTCGCGGCTCTGGGGCTACCGCTGCCTCACCACGCTCTGCGCGCTTCCGCTCTCGTGTCTCTGCGGCTGTCTCTTTGCCCTACTGGCCTGTATGCACATCTGGTGTGTGATGCCTTGTGTTCAGGTGTTTCATAGCTGCCTGCCCTGTGTGAGGTCACTGTGGATGAGTGTGGTCAACATCTTCATCGCTCCTTTCTGCTCTTCTGTGGCTCGCTGTTGCAGTGGCATATACGTAGTGTTCTCTAAAGAGTGAAGGAACTCAAGGAGGAGTCTGAAGAAGCTCGGAAAACTGCTTTCCTCTCAATTAATGGAAtaccaaaatagtttttttttgttatgtaaagCTGTGTTGAAATAATGAGACATTCAATGAATAGGAATACATGttgttaaatagatttttacatgttatcaaatatatatgcaaTCATTTATAACAAATTCTGCATGGGTTTGTCATATAcgaaattaaaatttttcataCAATCTGCTGACAGGCcta

Function

NR:

description
PREDICTED: caveolin-2-like

GO:

id name namespace
GO:0000139 Golgi membrane cellular_component
GO:0005901 caveola cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224640.1 True 1056 mRNA 0.46 4 11322655 11324876

Neighbor

gene id symbol gene type direction distance location
ikbkg LOC107737639,LOC107672044,LOC107741321,LOC107657029 coding downstream 793 11314705 ~ 11321862 (-)
ssr4 ssr4,LOC107671948,LOC107562474,LOC107737640,LOC107741342,LOC107657031,LOC107560913,LOC108436301 coding downstream 9065 11311561 ~ 11313590 (-)
sephs3 sps2,LOC107560911,LOC108275954 coding downstream 11753 11305279 ~ 11310902 (-)
fam120c fam120c,LOC107741318,LOC107657034,LOC107672004,LOC107562475,LOC107560908 coding downstream 62468 11245528 ~ 11260187 (-)
hsd17b10 hsd17b10,LOC107562460,LOC107741341,LOC107560905,LOC107737644 coding downstream 81067 11238450 ~ 11241588 (-)
arhgap4b arhgap4b,LOC107560914,LOC107737637,LOC107672018,LOC107741320,LOC107657026 coding upstream 617 11325493 ~ 11351439 (-)
zgc:103759 zgc:103759,LOC107737722,LOC107562457,LOC107657028,LOC107741343 coding upstream 30004 11354880 ~ 11356679 (-)
trpc4apb trpc4apb,LOC107737634,LOC107560917,LOC107672047,LOC107741324,LOC107562468 coding upstream 54672 11379548 ~ 11386723 (-)
nsfl1c nsfl1c,LOC107737635,LOC107560918,LOC107741325,LOC107562467,LOC107657023 coding upstream 65685 11390561 ~ 11395473 (-)
wu:fa11c10 wu:fa11c10,LOC107672043,LOC107737632,LOC107560922,LOC107562466,LOC107741327,LOC107657022 coding upstream 87008 11411884 ~ 11428747 (-)
G156762 NA non-coding downstream 77835 11242600 ~ 11244820 (-)
G156759 NA non-coding downstream 159636 11162664 ~ 11163019 (-)
G156726 LOC107737655 non-coding downstream 246694 11071410 ~ 11075961 (-)
LOC122329093 NA non-coding downstream 264660 11050293 ~ 11057995 (-)
G156719 rnd1a,LOC107560900,LOC107737660,LOC107657046,LOC107563659,LOC107741331,LOC107672025 non-coding downstream 269360 11047145 ~ 11053295 (-)
G156785 NA non-coding upstream 28283 11353159 ~ 11353828 (-)
LOC122328925 NA non-coding upstream 51301 11376177 ~ 11376688 (-)
G156812 NA non-coding upstream 214747 11539623 ~ 11540045 (-)
G156962 NA non-coding upstream 437564 11762440 ~ 11763023 (-)
G156971 NA non-coding upstream 456691 11781567 ~ 11782366 (-)
G156746 NA other downstream 217432 11100744 ~ 11105223 (-)
LOC122328798 fkbp1ab,fkbp1a,LOC107707744,LOC107657066,LOC107747971,LOC108435222,LOC107559476,LOC100705189,LOC105013763,LOC101476936 other downstream 644505 10675680 ~ 10678150 (-)
ankrd52a ankrd52a,ankrd52,LOC107594018,LOC107756410,LOC107549041,LOC108432261,LOC107671831,LOC107723718 other downstream 936688 10218473 ~ 10385967 (-)
LOC122328546 rpl10 other upstream 416524 11741400 ~ 11746620 (-)
LOC122329329 NA other upstream 420386 11745262 ~ 11745395 (-)
atp2b3b atp2b3b,atp2b3,LOC107737604,LOC107712727,LOC107672007,LOC107593407 other upstream 438833 11763709 ~ 11857968 (-)
si:dkey-93l1.9 si:dkey-93l1.9,LOC107699586,LOC107593449,LOC107671978,LOC107699561,LOC107576394,LOC107737609 other upstream 475046 11799922 ~ 11801632 (-)
G156985 NA other upstream 597968 11922844 ~ 11924650 (-)

Expression


Co-expression Network