srsf6a (srsf6a,LOC108276344,LOC107714268)


Basic Information

Item Value
gene id srsf6a
gene name srsf6a,LOC108276344,LOC107714268
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 1070758 ~ 1075667 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224652.1
CGGTTGGCAATCGGACAAAAGCCTGTTGCGGCTGGTTTCAGTGCTGGAGATAATCTGCTGCTGCTGAGCTGTAACGAAATCAAGATGCCTCGAGTGTACATCGGCAGGTTGAGCTATCATGTCCGCGAGAAAGACATCCAGCGGTTCTTCAGCGGTTACGGAAAGCTGTTGGAGGTGGATCTGAAGAACGGGTATGGCTTTGTTGTGTTTGAGGACACCCGTGATGCTGATGACGCAGTCTACGAGCTGAACGGAAAAGAGCTGTGTGGAGAGCGGGTCATGGTGGAGCACGCCAGGGGTCCGCGCCGAGACCGGGACAGCTATGGAGGGGGTTATTAtggtggtggaggaggaggaggaggaggaggtggtggaggtggaggaggaggcggaggcggaggaCGCAGTGGTTACAGCAGCAGGAGTCGCACCGGAAGGGACAAGTATGGCCCTCCTGTTCGCACCGAGTACCGCCTCATCGTGGAGAATCTGTCGAGTCGCTGCAGTTGGCAAGACCTTAAGGATTTCATGCGACAGGCAGGTGAGGTGACCTACGCAGATGCCCATAAGGAGCGTGCCAACGAGGGTGTGATTGAGTTCCGCTCTTACTCCGACATGCGGAGAGCCGTGGAGAAACTGGACGGAACAGACATAAATGGGAGGAAAATTCGTCTGGTTGAAGACAAGCAGCGGAGGCGTCGCTCCTACTCCGGCAGCCGTTCTCGTTCTCGTAGCCGGCGTCGTTCTCGTAGTAGGAGTCGCCGTAGCAGCCGCTCTCGGAGCAACTCAAGATCTCGCTCAAGGTCTCGTTCTCGCCGGCACCGCTCCCGTTCCAGGTCTCGCTCCAAGTCTCCATCAAGCAAGTCTCGTTCGCGCAATCGTAAATCTCGTTCTCGCTCCCGCACACAAAAATCTCGCAGCCGATCAACCAGTCGCAAGTCCCGCTCCCGCTCGGATGAGCGCAAGTCCCGCTCTAAGAGCACTTCCAAAGTGAAGTCGGACCGTGGGCGCTCCAAGGAGAAATCGGTCACCAGGAAATCCAGAAGTAGATCTGCTTCACCGATGGAGAATGGCGATGGGGGTCATGCCAAGTCTGCTTCTCGCTCTCCGTCACCTCAGGCTGAGAAGAGCCAGTATAAGTCTCCAGACAGGCATTCTCGTTCTCGCTCGAAGTCTGCCTCACGTTCTAAATCCCGTTCCCGTTCCAGATCTGCGTCCCAAGATTAGTATTAAGTGTGGtcggattttttttctttcttttttttttcctctccttttGTTTTCCTCCAGCTCCTTCATCAATCCAGTTGTCCAGGATAGTTTTCTAATGCTCATGACGGGTTCAGGTCCAAGgcgtttcatttgttttattttactcttcTATAGTAAAAGTGAATCACCGCTTcgatattttatattcataacaaaagcatgaaaataaGTGATTTGATTTAGTGTGCTGCATGTCAGTCCTTTTTATAATCCATGGTCCTCTGTGCTGTGTGGCTAGAAGAGGCTTCTTGGCAAGGAAACGAAAAGTCACTGCGTCTTGTGGCTTGTAAAGCTATTATCTGAGAAATCTAGGCTTCCGTTTCATGTAATAGTTCATCGAAAACTgtctgattttgttttattaaaaaccagtctattta

Function

symbol description
srsf6a Predicted to enable mRNA binding activity. Predicted to be active in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in proliferative diabetic retinopathy and spermatogenic failure 3. Orthologous to human SRSF6 (serine and arginine rich splicing factor 6).

NR:

description
serine/arginine-rich splicing factor 6a isoform X1

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K12893 SRSF4_5_6, SFRS4_5_6; serine/arginine-rich splicing factor 4/5/6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224652.1 True 1652 mRNA 0.51 6 1070758 1075667

Neighbor

gene id symbol gene type direction distance location
si:ch211-10d23.5 LOC107675163,LOC107736956,LOC107564805,LOC107555797,LOC107684905,LOC107714265 coding downstream 554 1065562 ~ 1070204 (-)
sgk2a sgk2a,LOC107684892,LOC107713751,LOC107555799,LOC107736955,LOC107675170 coding downstream 19286 1044820 ~ 1051472 (-)
mybl2a NA coding downstream 26123 1038921 ~ 1044635 (-)
adtrp1 zgc:112175,LOC107684890,LOC107713766,LOC107555804 coding downstream 33490 1032492 ~ 1037268 (-)
ptpdc1b LOC107736953,LOC107564794,LOC107684888,LOC107555790,LOC107713765 coding downstream 38407 1024657 ~ 1032351 (-)
arl6ip5b arl6ip5b,arl6ip5,LOC107684895,LOC107656678,LOC107736957,LOC107564791,LOC107555805,LOC102786473 coding upstream 2141 1077808 ~ 1081745 (-)
zgc:113278 zgc:113278,LOC107714267,LOC107555798,LOC107736961,LOC107656677,LOC107684897,LOC108427771,LOC105906438,LOC107564801 coding upstream 11525 1087192 ~ 1095438 (-)
b4galt5 b4galt5,LOC107736963,LOC107684873,LOC107656676,LOC107566184,LOC107725076 coding upstream 89356 1165023 ~ 1184666 (-)
LOC122329156 nup210,LOC107675171,LOC107684885,LOC107555788,LOC107564796,LOC107736952 coding upstream 206454 1282121 ~ 1344566 (-)
LOC122328434 NA coding upstream 286335 1362002 ~ 1371474 (-)
LOC122328476 NA non-coding downstream 107181 960274 ~ 963577 (-)
G153893 cnbp non-coding downstream 170992 841719 ~ 899766 (-)
G153911 NA non-coding downstream 294708 770513 ~ 776050 (-)
G153760 NA non-coding downstream 387647 679034 ~ 683111 (-)
LOC122328559 NA non-coding downstream 486267 583143 ~ 584491 (-)
G153966 NA non-coding upstream 129812 1205479 ~ 1206602 (-)
G153967 NA non-coding upstream 131033 1206700 ~ 1207587 (-)
G153984 LOC107727750,LOC107691341,LOC107566873 non-coding upstream 313695 1389362 ~ 1393135 (-)
LOC122328606 NA non-coding upstream 344190 1419857 ~ 1420454 (-)
LOC122328609 NA non-coding upstream 517945 1593612 ~ 1594209 (-)
l3mbtl1 l3mbtl1,LOC107736954,LOC107564793,LOC107684891,LOC107675169 other downstream 5984 1053377 ~ 1064774 (-)
vgll4a LOC107675174,LOC107736947,LOC107713758,LOC107684880,LOC107555803,LOC107574679 other downstream 188574 865477 ~ 882184 (-)
ndnl2 ndnl2,LOC107736943,LOC107568481,LOC107714263,LOC107660884 other downstream 284879 779085 ~ 785879 (-)
smim29 si:dkey-226k3.4,LOC107690111,LOC107567962,LOC107724208,LOC107738791,LOC107678078,LOC107571229 other upstream 432031 1507698 ~ 1512329 (-)
LOC122328833 LOC107669693 other upstream 1027043 2102710 ~ 2116883 (-)
LOC122328838 LOC107680059,LOC107748448,LOC107565963 other upstream 1693815 2769482 ~ 2839047 (-)
LOC122328849 LOC107718007,LOC107687303,LOC107571802,LOC107748430,LOC107680054,LOC107565975 other upstream 1711629 2787296 ~ 2798533 (-)
si:zfos-905g2.1 si:zfos-905g2.1 other upstream 1793951 2869618 ~ 2874758 (-)

Expression


Co-expression Network