arfgef2 (arfgef2,LOC107671990,LOC107737629,LOC107562465,LOC107741338,LOC108436330)


Basic Information

Item Value
gene id arfgef2
gene name arfgef2,LOC107671990,LOC107737629,LOC107562465,LOC107741338,LOC108436330
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 11466356 ~ 11488430 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224666.1
AGTGTAAGCGCCTGTTGGTCACGTGACGTGACGCGCGGCCAACATGGCGACGCAGTGCTGAGATAGCAGCGTCCAACCGAACCAGCGACAACATCGGCCCGCTCCAGTCACCCTCACACACCCCTGCCGAACCGCGGGGAACGGGCCGGCGATGACGGCCTGACGGACTGCTTCAACACGTCGACCGAGAGATGAAAGAACAGGAAGAGCTGGAAACCCGTCGACAGCATACGCAGACAGAAAGCCTGAGCACCAAGAGCATGTTTCTGTCTCGGGCGCTGGAGAAAATCCTCGCGGATAAGGAGGTGAAGCGGAGCCAACACAGCCAGCTGCGCAAGGCCTGTCAAGTGGCGCTGGatgAAATCAAGCACGAACTGGAAAAGCAGAAGGATGGCACGGTTGTTCCTCCCAGAGCCAATTACATTGAGGCTGACAAGTATGTCCTGCCTTTCGAGCTGGCATGTCAGTCCAAGTCTCCACGTATTGTCAGTACGTCTCTCGACTGCTTACAGAAACTCATTGCGTATGGGCACATCACGGGGAGCCCTGACAGCGGAGCTCCAGGAAAGCGGTTGATTGACCGGCTGGTGGAGACCATCTGTAACTGCTTCCAGGGACCCCAGACTGATGAGGGGGTGCAACTACAGATCATTAAGGCTCTGTTGACTGCTGTGACTTCACCACACATAGAGATCCACGAGGGAACGATTCTCCTCACTGTCCGCACCTGCTACAACATCTACCTTGCCAGCCGCAACCTGATCAACCAGACCACGGCCAAGGCCACTCTCACACAGATGCTCAATGTCATCTTCACCCGTATGGAGAACCAGGCGGCTCTGGAAGCTCAGGAAGCAGAGAAGGAAAGACAACGTCTGCAGCTGCGCAATCCTTCTCCAGTATCCAGTAACCCTTCACCTGTGGCTCAAAACCCCTCCCCGACTCCTGGTCGGGGGTCTGGATCGCCATGGCTCGGACGAGCTCGCTCAGAACAGAACGGACCCCCATCCCCCTCTCTCAGCCCCCCTGGGGTCCCCTCCACTCCTTCCACCCCCCAGGACTCATCCTCCATCAACGGCCAGCCAGAAGAGACAAAGTCCGAGGAGGAGTTTGCCGCAGATAACCAGAGCACAAAGGAAATTGCACACCCAGatgaagaGATTCAGGAGTCAGACCAGACGACTTCATCGGTGTCAGGAGGTGTTGAGGGAGAGGAGGCCCATCCTGAGACAGAAGCAGGCACCGAGGTTCAGGAAGAGACTGAGCCAGACAGTGGACTGGGAGATAGCTCTGTGGAAGGAGGCTTAGATCAACATTCTGACTCAGAAACCAAAGTGCCGCCCCCTGTTGTTCGACTCGACCCACAGCAGATGAATGGAATGGTGGATGAACGTGGCTCAGAGTCCTCCACAGACATTCTGGATGCAGAAACCATCCAGGGCAGTCAGACAGCTGCTCGTTTCTCACACATCCTACAGAAAGATGCCTTCCTCGTGTTCCGCTCCCTCTGCAAGCTTTCCATGAAGCCCCTGGCTGATGGACCACCTGACCCAAAgtcCCATGAGTTGCGCTCTAAGGTGGTTTCCCTGCAGCTGTTGCTGTCAGTACTGCAAGGAGCTGGACCTGTTTTCCGAACCCATGAGATGTTTGTGAACGCCATCAAACAGTACCTGTGTGTGGCTCTCTCCAAAAATGGGGTCTCCTCTGTGCCTGAAGTATTTGAACTTTCACTTGCCATCTTCCTTACCCTGCTCTCCCACTTCAAAGTGCACCTTAAGATGCAGattgagGTGTTCTTCAGGGAGATCTTTCTAACAATCCTAGAGACGTCATCCAGCTCTTTCGAGCACAAGTGGATGGTCATTCAGACTCTAACTCGAATATGTGCAGATGCACAATGTGTGGTGGACATTTACGTGAACTATGACTGTGATCTCAACGCTGCCAATATTTTTGAGCGACTGGTAAATGACCTTTCTAAGATCGCCCAGGGAAGGAGTGGACAGGAGCTCGGCATGACTCCGTTACAGGAGCTGAGTTTGAGAAAGAAAGGGCTGGAGTGTCTGGTGTCCATTTTGAAGTGCATGGTGGAATGGAGCAGAGACATGTACGTCAACCCCAACCTGCAGGCCAACCTTGGTCAAGAACGTCCAGCAGAGGGCGACAGTGCGGATGGGAAGCTCCATGAGAACCTTTCCTCTCGCAGAGATAGTGTGAGCTCTCTGGACTCCACTGTGTCGTCTGGAGTTCAGCAATCCCAGCCGGATCACCCCGAGCAGTATGAGGTCATCAAGCAGCAGAAAGAGATCATTGAGCATGGCATTGAGCTGTTTAACAAGAAACCAAAAAGGGGATTGCAGTACCTGCAGGATCAAGGCATGCTGGGAATCACACCAGAGGACATTGCACAGTTCTTGCAGCAGGAGGAGCGACTAGACACAACTCAGGTGGGCGAGTTCTTGGGAGAGAATGTGAAGTTTAACAAAGAAGTGATGTACTGCTATGTGGACCGGCTGGACTTTTGTGGCAAAGACTTTGTGTCAGCGCTCCGTGCCTTCCTGGAAGGCTTCAGGCTTCCAGGTGAAGCCCAGAAAATTGATAGGCTCATGGAGAAGTTTGCCGCCCGATACCTGGAGTGCAATCAAGGGCAGACTCTGTTTGCCAGCGCAGACACAGCTTATGTTCTGGCCTACTCCATCATCATGTTAACCACCGACCTGCACAGTCCACAGgtGAAGAACAAAATGACGAAGGAGCAGTACATAAAAATGAACCGTGGAATTAATGACAGTAAGGACCTGCCCGAGGAGTATCTCTCCTCAATCTACGATGAAATTGCAGGAAAAAAGATTGCTTTGAAAGAGAGCAAAGAATACTCCATCACTCCCAAATCCAGTAAACAGAATGTAGCCAATGAGAAACAGAGAAGGCTGCTGTATAACATGGAGATGGAGCAAATGGCCAAAACGGCTAAAGCTCTGATGGAGGCTGTAAGTCATGCTCAGGCTCCCTTCTTCAGCGCCACTCACCTAGAGCACGTCCGGCCCATGTTCAAGCTAGCCTGGACTCCTCTGTTGGCGGCATTCAGCGTAGGACTCCAGGATTGTGACGATCAGGACGTGGCATCTCTTTGTCTGGAGGGCATCCGATGTGCAATCAGGATCGCCTGCATCTTCAACATGCAGTTGGAGAGAGATGCCTACATCCAGGCCTTGGCCCGGTTTACACTGCTCACAGCTAGCTCAAGTATCACAGAGATGAAGCAGAAGAACATTGACACCATAAAGACTCTCATCATGGTTGCCCACACTGATGGAAACTACTTGGGAAACTCCTGGCATGAGATTCTGAGGTGTATCAGTCAGCTGGAGTTGGCCCAGTTGATTGGGACAGGAGTGAAGACGCGTTATATCTCCGGTGTGGTCCGGGACCAGGGAGGCAGCATAAAGGGCTTCCCATCAGGGGGAGAGGAATTCATGCCCCTCGGCTTAGGTACTCTGGTTGGAGGTCCAGACAAGCGTCAGATGGCTCATATCCAGGAGTCAGTGGGGGAGACCAGCTCTCAGAGTGTAGTGGTGGCTGTGGACAGAATCTTCACTGGATCCACCAGGCTTGATGGAAATGCAATTGTTGACTTTGTGCGTTGGCTCTGTGCGGTGTCCATGGACGAATTGGCTTCTGCTCACCAGCCACGCATGTTCAGTCTGCAGAAGATAGTGGAGATCTCCTACTACAACATGAACCGCATCCGTTTGCAGTGGTCACGCATTTGGCAGGTCATCGGAGATCACTTCAACAAGGTTGGTTGTAATCCAAATGAGGATGTGGCCATCTTTGCTGTGGATTCCCTGAGACAACTCTCAATGAAGTTTCTGGAGAAAGGAGAGCTTGCCAATTTCCGCTTCCAGAAGGACTTTTTAAGACCATTTGAACACATCATGAAGAAGAACCGgtCGCCCACTATCCGGGACATGGTGATACGATGTGTGGCCCAGATGGTCAACTCCCAGGCTGCTAATATTCGCTCTGGCTGGAAGAACATCTTCTCTGTGTTCCATCAAGCAGCGTCAGATCATGACGAGAACATTGTGGACCTAGCGTTTCAAACCACAGGACACATTGTTATGAATACATTTCAGCAGCATTTTGCCGCAGCCATCGACTCTTTCCAGGATGCGGTCAAGTGTTTGTCAGAGTTTGTGTGTAACGCTGCATTTCCTGACACCAGCATGGAAGCCATCCGGCTCATCCGTCACTGTGCTAAATACGTGTCTGACAGGCCTCAGGCACTGAGGGAATACACTAGTGATGACATGAATGTGGCCCCTGGTGACCGTGTTTGGGTGCGAGGCTGGTTCCCCATCCTGTTTGAGCTGTCCTGCATCATCAACCGCTGCAAGCTAGACGTCAGGACCAGGGGGTTGACTGTTATGTTTGAGATCATGAAGAGTTACGGACACACCTTTGAGAAGCACTGGTGGCATGACCTCTTTCGGATCATCTTCCGAATATTTGACAACATGAAGCTCCCTGAGCAGCAGACTGAAaaaacCGAGTGGATGACAACGACATGTAACCACGCCCTCTACGCTATCTGTGACGTGTTCACGCAATTCTACGAGCCTCTCAGCGAGGTGCTGCTGGCCGACGTTTTTGCCCAGCTGCAGTGGTGTGTGAAACAAGACAATGAGCAGCTGGCACGCTCAGGCACAAACTGTCTGGAGAACCTGGTGATCCTGAACGGGGAGAAGTTCAGTCCGGAGGTGTGGGACGTCACCTGCGCCTGCATGCTGGATATCTTCCAGACCACCAGCCCTCATGCCTTGCTGACATGGCGACCAGCTGGACAGGAAGAGGAGGTGGGAGAAGGGAAACACATGgATGTTGAGGTTGATTCTCAGTCACAGAGCAGCTTTGAGAGGACTCTTTCAGAGAGAGGACACAGTCAGATGTCCACTGCTAGTGATGAAACATGGAAAGGAAAATCCCAAACCAGGGTCTCGGACCACAGGCTGTTTGCAGGGCTGCTTATAAAGTGCGTCGTACAGCTGGAGTTGATTCAAACCATAGACAACATTGTATTCTACCCGGCTACCAGCAAGAGGGAGGATGCAGAGAACATGGCGGCTGCTCAGCGCGATGCACTTGAGCAAGCAGACGGAGGAGAGACGGAGGCCGATCAGGGCATGTACAGACACCTGTCATCACAGCACCTCTTCAAACTGCTTGACTGCCTCCTTGAGTCCCACAGGTTTGCCAAGGACTTCAATTCAAACAATGAGCAGAGGACAGCTCTCTGGAGAGCAGGCTTTAAGGGGAAGTCGAAACCGAATCTTCTGAAGCAAGAGACCAGCAGTCTGGCCTGCAGTCTGAGGATCCTCTTTCGCATGTACTCCGACACGCAGCTGCAAGACTCCTGGCCAGACATCCAGACACGCCTGCTGCAGGTGTGTAGTGAAGCCCTGGCTTACTTCATCAGTCTTACCTCAGAGAGCCACCGAGAAGCCTGGACGAGTCTCCTACTGCTGCTCCTCACCCGGACACTCAGACTGCCTGATGACAAATTCAAGCCTCACGCCTCCTGCTACTACCACCATCTGTGTGAGATGATGCAGTTCGACCTCATTCCGGAGCTTCGCGCCGCTCTGCGGCGATTTTTCCTTCGTATCGGTTCAGTCTTCCACATCGCCGCTCCTGAACTGGGCAGAGCGCAGCCTTCGCCATCATCATAACGCGTATCAGAACTGGGAACACGGCTCAGAGATGAACTGGGGAGCAAGCGGGGCTGTGATGTGTATAAGCCTCTGCTGTGATCTGAAGGACTGTAGAGGAGCGCAGAATGACTGTGTGTGACTGTCCCATCCTTTCGCCTGCCGGTCCTGACTCATCTCCATCAGTTGCTCCCCTACGAGCGAACAGCACTGTGACCCAGCAGGGCGACGCTTCTGCTGTGTCATTCGTCCGTGTTGTTAGAGTCATGagtcatatttgtttatttttattttggctttCTTCAGGATGGctgtgaaaataatttattaccaGTACTGCTGTATATCTGGTTTCTGATTGTCTGTTGATTTCATCGTTTTGGCTTTCGTCCTATCTGTaaatttttgtctgttttaaaggCTGAAGAAAGATAGACGTACAGAAATGACATCATCCCCCTGTTATTAAGAGCTTGTTGAAGACACCCGATGTGCAATCAGCTTCCTCCAGTGAATAATGGTATATTTGTTAATGAGTTAAGGTTCAACAATGGCCCATTATCATCCTTTATTGATTCATTGTACAATTAAACAGTCATCTctgatttacaaaaaacattcaagcAACCCACAGAGGTTTTGGCATTTAAATGCTTTGAGGGAAAGGgctttaatttggtttggacgtgTTCACACTAAACTCCAAATTGTCTCAAGAAAGCAAAGGTTGCTTTCAAAGCATTTGGTGTTTATTTTACACGTGTCAATAGTTACGCTTTGTAATCCAGACCAGGCCCACGCTATCATTCCTTACATACCACAGATCATGCTCATTTGGTTTCCATcatattcaaatttattatattttttttttttaggtgttctttcttcttatatatatttatcattgaAATCTTAAGACatctaatgaatatttaattttactgcGTTAAAGTttgcttaagtttttttttaaatattacatttttgcaagtGCTGTTCGCTCTTGATTTGGAGCTAGACTGAATCAGCAAGTTTACGTGATGGATGCCAGTCATAAAACAATTGAAGTGGGGGGAAACGGGAATACAAAAGTACCATATAATCCAGGTATATCTTCATTAAACCCGTGCAGCATATGACTTACTTGTGTATTACCAGTGCAGATTCAACTCCCGATTCATTTTCATTGAGTATGTATTTCATTCTtgaagtgcatttaaatattttctgaaaagcaTTCCTTCCCTTGCAACTATGGATGTCTACTTTGCCTCCCTGGACACTGggagatataaatatatatagtatatgacGAAATACAATGTGTAAAgttttcatgtaaaatatacagaataaCGTTCGACTCTATACATATTGTGATGTAATCTTACAAGCATTTGGTGAAGTAATCAATAAAGTTTGAATTCTGAACCATTGAA

Function

symbol description
arfgef2 Predicted to enable guanyl-nucleotide exchange factor activity. Acts upstream of or within with a positive effect on angioblast cell migration and cell migration involved in sprouting angiogenesis. Predicted to be located in Golgi apparatus and perinuclear region of cytoplasm. Is expressed in brain. Human ortholog(s) of this gene implicated in periventricular nodular heterotopia. Orthologous to human ARFGEF2 (ADP ribosylation factor guanine nucleotide exchange factor 2).

NR:

description
brefeldin A-inhibited guanine nucleotide-exchange protein 2-like isoform X1

GO: NA

KEGG:

id description
K18442 ARFGEF, BIG; brefeldin A-inhibited guanine nucleotide-exchange protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224666.1 True 7153 mRNA 0.50 40 11466356 11488430

Neighbor

gene id symbol gene type direction distance location
bcl2l1 bcl2l1,LOC107560925,LOC107737630,LOC107671991,LOC107741328,LOC107657020,LOC107576469 coding downstream 1446 11446999 ~ 11464910 (-)
wu:fa11c10 wu:fa11c10,LOC107672043,LOC107737632,LOC107560922,LOC107562466,LOC107741327,LOC107657022 coding downstream 37609 11411884 ~ 11428747 (-)
nsfl1c nsfl1c,LOC107737635,LOC107560918,LOC107741325,LOC107562467,LOC107657023 coding downstream 70883 11390561 ~ 11395473 (-)
trpc4apb trpc4apb,LOC107737634,LOC107560917,LOC107672047,LOC107741324,LOC107562468 coding downstream 79633 11379548 ~ 11386723 (-)
zgc:103759 zgc:103759,LOC107737722,LOC107562457,LOC107657028,LOC107741343 coding downstream 109677 11354880 ~ 11356679 (-)
pard6b pard6b,LOC107737628,LOC107560924,LOC107657018,LOC107712746,LOC107562464,LOC108436329,LOC107671939 coding upstream 1736 11490166 ~ 11507285 (-)
LOC122328724 ebp,LOC107672060,LOC107712744,LOC107657016 coding upstream 27707 11516137 ~ 11517702 (-)
trnah-gug_32 NA coding upstream 29580 11518010 ~ 11518081 (-)
oard1 oard1,LOC107672023,LOC107712742,LOC107657014 coding upstream 41607 11530037 ~ 11531810 (-)
guca1b guca1b,LOC107657012,LOC107562461,LOC107560929,LOC107672062 coding upstream 44211 11532641 ~ 11536011 (-)
LOC122328925 NA non-coding downstream 89668 11376177 ~ 11376688 (-)
G156785 NA non-coding downstream 112528 11353159 ~ 11353828 (-)
G156762 NA non-coding downstream 221536 11242600 ~ 11244820 (-)
G156759 NA non-coding downstream 303337 11162664 ~ 11163019 (-)
G156726 LOC107737655 non-coding downstream 390395 11071410 ~ 11075961 (-)
G156812 NA non-coding upstream 51193 11539623 ~ 11540045 (-)
G156962 NA non-coding upstream 274010 11762440 ~ 11763023 (-)
G156971 NA non-coding upstream 293137 11781567 ~ 11782366 (-)
G156972 NA non-coding upstream 305173 11793603 ~ 11851710 (-)
G156978 NA non-coding upstream 566816 12055246 ~ 12061368 (-)
G156746 NA other downstream 361133 11100744 ~ 11105223 (-)
LOC122328798 fkbp1ab,fkbp1a,LOC107707744,LOC107657066,LOC107747971,LOC108435222,LOC107559476,LOC100705189,LOC105013763,LOC101476936 other downstream 788206 10675680 ~ 10678150 (-)
ankrd52a ankrd52a,ankrd52,LOC107594018,LOC107756410,LOC107549041,LOC108432261,LOC107671831,LOC107723718 other downstream 1080389 10218473 ~ 10385967 (-)
LOC122328546 rpl10 other upstream 252970 11741400 ~ 11746620 (-)
LOC122329329 NA other upstream 256832 11745262 ~ 11745395 (-)
atp2b3b atp2b3b,atp2b3,LOC107737604,LOC107712727,LOC107672007,LOC107593407 other upstream 275279 11763709 ~ 11857968 (-)
si:dkey-93l1.9 si:dkey-93l1.9,LOC107699586,LOC107593449,LOC107671978,LOC107699561,LOC107576394,LOC107737609 other upstream 311492 11799922 ~ 11801632 (-)
G156985 NA other upstream 434414 11922844 ~ 11924650 (-)

Expression


Co-expression Network