ube4b (ube4b,LOC107570768,LOC107681967,LOC107718816,LOC107586519,LOC107695775)


Basic Information

Item Value
gene id ube4b
gene name ube4b,LOC107570768,LOC107681967,LOC107718816,LOC107586519,LOC107695775
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 8999326 ~ 9018982 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224686.1
ACGTGACCCCAGATCCAAAATGGCCGCGTCGGTGTTTTGACGAATAatacttttgtgtttgtttcattcTTAACAGAAACCGAAGATAACCCTTTTCGAGCGTAAAAAAACAGCAACGCGcgtttgatgttttaatataaagatTTAAATTAGACAATCACAGCTCATTGATATTTGTTTTATGGTTCAGACTATGCACTTTTGGTGTTTATAAGGAAGCTAGCTGACTGGCTAGCAACATAATTAAgctgaaaattaaaagaaaggCAATGGAGCAGCTGAGTCCTGAAGAGATCCGTAGAAGGCGACTGGCCCGGTTAGCCGGAGGGCAGACGTCACAGCCCAATACCCCTCTCAGCACCCCTTTGACATCCCCACAGAGAGAAACTCCCCCAGGACCCTTGCCAGGGCCCTCCGGGGCATCATCACAGCCTGTCCCACCAGCTCCATCTCACACTCTAGGCCTAAATGCCCAAAATGTCACCCCTGCCACCTCTCCTATGGGGGCCTCGGGGGTTGCTTACCGCAGCCAGAGCAGCGAAGGGGTCAGCTCTCTCTCTAGCTCTCCATCTAACAGTCTGGAGACACAGTCCCAATCCCTGTCCCGCTCCCAGAGCATGGACATCGACACAGCCTCCTGCGAGAAGAGCATGTCCCAAGTAGATGTGGACTCAGGAATTGAGAATATGGAGGTGGAAGACAGTGATCGCAGAGAGAAAAGGAACCTGGCTGAGAAGGATTCCTCATCCAGCTCTGATGTCTCTGAAGAGCAGGCTTTGCACCTCATCTGTAAGATCTTGCGTGTCTCTTGGAAGGAACAGGACCGTGATGTCATCTTCCTTCCCTCACTTGCTGCTGAATTCCAGAAGAACCCTAGGGATGTTTACTCTGACTTCAAAGACCTGATCGGACAGATTTTAATGGAGGCTTTAATGATGTCCACCCGATCACGTGACTGTAACCCATTCGCCAGCTTGACCGCCACATCTCAGCCAATTACCGCTGCCAGATCCCCAGACCGTCACCTGACTCTCGTCCCACCCTCCAGCCAGAGCGGCAGTCCCATGATGCCCTGCGCTGGTTCATTCGGTGCCAGCTCTCTTTCCAGTCTTTACGGTTGTAGCCCAAACCCACTCGCTCTGAGCTCTGCCAGAATGAGTGCTCCATCTGTCCCACCGGCTTCTGCAGCCGCCCTCCTAGTTCCCCCAAGTCCTCCTGTCTCTCGCCCTCCCACCAGCCTTCCACCTCCCTCTCCATCCGCCCCTCTGCCCATCTCCCAGAGATACCGGCCCTACTCCCTTAGCTCGTCCATCCCCATAAGCCCAAACCCCAGATCTACTCCATCTGGTATGCTTACGCCCCCTACGACTTCAGGTATACCCTCCAGCCCTTCCCCTAGACACCATAGCACCCACACCTCCATGCCTTTCCCCATCCTCCCCGGCTCTCCCAGCACTGTGGCCAGAAGGACTGCGCTAGCCGCCCGGATGCCCTCTAGccctttctctctcctcttcttcgCCCTGTCCGACTTGCCTCAGGACAGCAGTGATgaagagctggaggaggaggaagaggaggatttTTCAAGGGTTCAGTTTGGGTCCAGcCTGGGTGCATCCGGAGGAGGGATGGCTGGAGACTCAGGTAGCGACCGCTTTACCATAGAGTCCTGTAAAGAGACGGAGATGCTCAACTACCTCATCGAGCGTTTTGACAGTGTGGGAATGGAAGAGAGGAAGGCCCCAAAGatgtgCAGCCAGCCAGCTGTCAGTCAGCTGCTTAGCAACATTCGTTCCCAGTGCATTTCCCATGCTGCACTAGTGCTTCAAGGTGCCCTCACACAGCCCAGGGCCCCTCTACAGCCCTCCCTGCTGGTTCCCTACATGCTGTGCCGGAACCTTCCGTACGGCTTCATCCAGGAGTTGGTGCGCATGACTCACCAGGAGGAGGAGGTGTTTAAACAGatcTTCGTTCCCATTCTTCAAGGGCTTGCTTCAGCTGTTAAAGAATGTTCTTTTGACAGTGACAACTTCAAGTTCCCTCTAATGgcttTGGCTGAGCTCTGTGAAATCAAGTTTGGGAAGACTCACCCTGTATGCAATTTGATCACCTCTCTGCCATTGTGGTGTCCTGATCCTCTCAGTCCCGGGACAGGAAGAGAAATTCAAAGACTCTCCTTCCTTGGAGCGTTCTTCAGTCTTTCTGTGTTTGCTGAGGATGACACTAAAGTGGGAGACAAGTACTTCTCAGGCCCTGCCATCACTATGGAGAACACCCGTGTGGTCAGCCAGTCACTGCAGCATTATCTGGAGTCTGCGAGGGGAGATCTGTTTAAAATCCTGCACAACATCTTGTTGAACGGAGAGACAAGGGAAGCAGCTCTGAGCTACATGGCAGCTCTGGTGAATCGTAATGTGAAGAAGGCTCAAATGCAGACCGACGACAAGCTGGTGTCCACAGACGGCTTCATGATGAACTTCCTGTGGGTGTTGCAGCAACTCAGCATGAAGATCAAGCTGGAAACGGTGGATCCTCTCTACATCTTCCACCCCAAGTGTCGGCTGAATGTCAGCACAGAAGAGACCCGGCTCAAAGCCACGATGGAGGACCTGAAGAGCTGGCTCGCTGAGCTGCATGAAGACCCGTCCAAGTTCTCGGAGCCCAAGTTCCCAACAGAGTGCTTCTTCTTAACGCTACACGCACATCATCTGTCCATCCTCCCGTGCTGTCGCCGCTACATACGGAGGCTGAGGGCCATCAGGGATCTGAACAGaacTGTGGAGGAGCTGAAGAACAGTGAGAACCAGTGGAAGGATTCCCCTTTGGCAAGTCGTCATCGGGAGATGCTGAAGAGATGTAAAACACAGCTGAAGAAACTGGTGCGCTCTAAAGCCTGCGCAGACGCAGGGCTGCTGGACGAGAACCTGCTGCGCAGATGTCTCCAGTTCTTCAGTATGCTCATCCAGCTCATCCTGCGTATGGTGGAGCCTGCCTACCCACACGTAACCCTGCCTCTGAACCCAGAAATCCCCAAAAGCTTTGCAGCACTGCCGGAGTTTTACATTGAAGATGTGGCTGAGTTCTTGCTTTTTATTGTGCAgtactTTCCACAGGTTCTCTATGAGCCGTGCACTGAAGACATTGTGACCTTCCTGGTGGTCTTCATTTGCAGTCAAAATTACATAAAGAACCCATACTTGATTGCCAAGCTGGTGGAGGTGCTGTTCGTCACCAATCCTGCGGTGCAGCCGCGCACTCAGCGTTTCTTTGAGATGATGGAGAACCACCCACTGTCTGTCAATCAGCTTGTACCAGCACTCATGAAGTTTTACACAGATGTGGAGCACACTGGAGCCACAAGCGAGTTCTATGACAAGTTCACAATCCGTTACCACATCAGCACCATTTTCAAAAGCCTATGGCAAAACATTAACCACCAAGGCACCTTCCTCGAGGAGTTCAActcTGGTAAACAGTTTGTGCGCTACATTAACATGCTAATTAACGATACAACCTTTCTGCTGGACGAGAGTTTGGAGTCTCTGAAACGCATCCATGAGATCCAGGAGGAGATGAAGAATAAAGAGCAATGGGACCAGCTTCCCAGGGAGCAGCAGCAGAGCCGACAGTCCCAGCTGACTCAGGATGAGAGAGTATCACGATCGTACCTGGCTTTAGCAACAGAGACGGTGGATATGTTTCATATCCTCACCAAACAGGTCCAGAAGCCATTCCTCAGGCCTGAACTGGGTCCTCGTCTGGCTGCCATGTTGAACTATAACCTGCAGCAGCTATGCGGGCCTAAATGTCGAGACTTGAAGGTGGAAAACCCAGAAAAATATGGTTTTGAGCCAAAGAAGCTCCTGGATCAGCTCACTGACATTTATCTGCAGCTGGACTGTGCCCGATTTGCTAAAGCCATCGCAGATGACCAGCGGTCATACAGCAGGGAGTTGTTCGAAGAGGTCAtttcaaaaatgagaaaagcGGGCATAAAATCCACCATTGCTATTGAGAAATTTAAACTGCTGTTGGAGAAGGTGGAGGAGATAGTGGCCCGCAATTCTCAGTCCGAGATGGATTACAGTGACGCCCCAGATGAGTTTAAAGACCCACTGATGGACACTCTCATGACCGATCCCGTGCAACTTCCCTCTGGCAACATCATGGATCGAGCCATCATTCTGCGACACCTCCTGAACTCTCCCACTGACCCCTTCAACAGACAGCCTCTCACCGAGAGCatgctggaaccagTCCCAGAGCTGAAGGAGCGCATCCAGGCCTGGATGAGAGAGAAGCAGACCGGCCGTATTTGAGTTTTCTCAGTGAGCCAAGCTTGCCCCgcagtttaaatgttttcaccACGCTGGAAGTGAACTGAAGAGtggagaaagaggaaaaaaaatgacagtaccCAAATTGTTTTCCCGCTTTTATCCTCTTTATCGAGCCGCTGTCTGACAGGCTCATGGTTCTAAATTGAAACATAATAAAGTTTAgacttttgaaaca
>XM_043224687.1
CGTGACCCCAGATCCAAAATGGCCGCGTCGGTGTTTTGACGAATAatacttttgtgtttgtttcattcTTAACAGAAACCGAAGATAACCCTTTTCGAGCGTAAAAAAACAGCAACGCGcgtttgatgttttaatataaagatTTAAATTAGACAATCACAGCTCATTGATATTTGTTTTATGGTTCAGACTATGCACTTTTGGTGTTTATAAGGAAGCTAGCTGACTGGCTAGCAACATAATTAAgctgaaaattaaaagaaaggCAATGGAGCAGCTGAGTCCTGAAGAGATCCGTAGAAGGCGACTGGCCCGGTTAGCCGGAGGGCAGACGTCACAGCCCAATACCCCTCTCAGCACCCCTTTGACATCCCCACAGAGAGAAACTCCCCCAGGACCCTTGCCAGGGCCCTCCGGGGCATCATCACAGCCTGTCCCACCAGCTCCATCTCACACTCTAGGCCTAAATGCCCAAAATGTCACCCCTGCCACCTCTCCTATGGGGGCCTCGGGGGTTGCTTACCGCAGCCAGAGCAGCGAAGGGGTCAGCTCTCTCTCTAGCTCTCCATCTAACAGTCTGGAGACACAGTCCCAATCCCTGTCCCGCTCCCAGAGCATGGACATCGACACAGCCTCCTGCGAGAAGAGCATGTCCCAAGTAGATGTGGACTCAGGAATTGAGAATATGGAGGTGGAAGACAGTGATCGCAGAGAGAAAAGGAACCTGGCTGAGAAGGATTCCTCATCCAGCTCTGATGTCTCTGAAGAGCAGGCTTTGCACCTCATCTGTAAGATCTTGCGTGTCTCTTGGAAGGAACAGGACCGTGATGTCATCTTCCTTCCCTCACTTGCTGCTGAATTCCAGAAGAACCCTAGGGATGTTTACTCTGACTTCAAAGACCTGATCGGACAGATTTTAATGGAGGCTTTAATGATGTCCACCCGATCACGTGACTGTAACCCATTCGCCAGCTTGACCGCCACATCTCAGCCAATTACCGCTGCCAGATCCCCAGACCGTCACCTGACTCTCGTCCCACCCTCCAGCCAGAGCGGCAGTCCCATGATGCCCTGCGCTGGTTCATTCGGTGCCAGCTCTCTTTCCAGcCTGGGTGCATCCGGAGGAGGGATGGCTGGAGACTCAGGTAGCGACCGCTTTACCATAGAGTCCTGTAAAGAGACGGAGATGCTCAACTACCTCATCGAGCGTTTTGACAGTGTGGGAATGGAAGAGAGGAAGGCCCCAAAGatgtgCAGCCAGCCAGCTGTCAGTCAGCTGCTTAGCAACATTCGTTCCCAGTGCATTTCCCATGCTGCACTAGTGCTTCAAGGTGCCCTCACACAGCCCAGGGCCCCTCTACAGCCCTCCCTGCTGGTTCCCTACATGCTGTGCCGGAACCTTCCGTACGGCTTCATCCAGGAGTTGGTGCGCATGACTCACCAGGAGGAGGAGGTGTTTAAACAGatcTTCGTTCCCATTCTTCAAGGGCTTGCTTCAGCTGTTAAAGAATGTTCTTTTGACAGTGACAACTTCAAGTTCCCTCTAATGgcttTGGCTGAGCTCTGTGAAATCAAGTTTGGGAAGACTCACCCTGTATGCAATTTGATCACCTCTCTGCCATTGTGGTGTCCTGATCCTCTCAGTCCCGGGACAGGAAGAGAAATTCAAAGACTCTCCTTCCTTGGAGCGTTCTTCAGTCTTTCTGTGTTTGCTGAGGATGACACTAAAGTGGGAGACAAGTACTTCTCAGGCCCTGCCATCACTATGGAGAACACCCGTGTGGTCAGCCAGTCACTGCAGCATTATCTGGAGTCTGCGAGGGGAGATCTGTTTAAAATCCTGCACAACATCTTGTTGAACGGAGAGACAAGGGAAGCAGCTCTGAGCTACATGGCAGCTCTGGTGAATCGTAATGTGAAGAAGGCTCAAATGCAGACCGACGACAAGCTGGTGTCCACAGACGGCTTCATGATGAACTTCCTGTGGGTGTTGCAGCAACTCAGCATGAAGATCAAGCTGGAAACGGTGGATCCTCTCTACATCTTCCACCCCAAGTGTCGGCTGAATGTCAGCACAGAAGAGACCCGGCTCAAAGCCACGATGGAGGACCTGAAGAGCTGGCTCGCTGAGCTGCATGAAGACCCGTCCAAGTTCTCGGAGCCCAAGTTCCCAACAGAGTGCTTCTTCTTAACGCTACACGCACATCATCTGTCCATCCTCCCGTGCTGTCGCCGCTACATACGGAGGCTGAGGGCCATCAGGGATCTGAACAGaacTGTGGAGGAGCTGAAGAACAGTGAGAACCAGTGGAAGGATTCCCCTTTGGCAAGTCGTCATCGGGAGATGCTGAAGAGATGTAAAACACAGCTGAAGAAACTGGTGCGCTCTAAAGCCTGCGCAGACGCAGGGCTGCTGGACGAGAACCTGCTGCGCAGATGTCTCCAGTTCTTCAGTATGCTCATCCAGCTCATCCTGCGTATGGTGGAGCCTGCCTACCCACACGTAACCCTGCCTCTGAACCCAGAAATCCCCAAAAGCTTTGCAGCACTGCCGGAGTTTTACATTGAAGATGTGGCTGAGTTCTTGCTTTTTATTGTGCAgtactTTCCACAGGTTCTCTATGAGCCGTGCACTGAAGACATTGTGACCTTCCTGGTGGTCTTCATTTGCAGTCAAAATTACATAAAGAACCCATACTTGATTGCCAAGCTGGTGGAGGTGCTGTTCGTCACCAATCCTGCGGTGCAGCCGCGCACTCAGCGTTTCTTTGAGATGATGGAGAACCACCCACTGTCTGTCAATCAGCTTGTACCAGCACTCATGAAGTTTTACACAGATGTGGAGCACACTGGAGCCACAAGCGAGTTCTATGACAAGTTCACAATCCGTTACCACATCAGCACCATTTTCAAAAGCCTATGGCAAAACATTAACCACCAAGGCACCTTCCTCGAGGAGTTCAActcTGGTAAACAGTTTGTGCGCTACATTAACATGCTAATTAACGATACAACCTTTCTGCTGGACGAGAGTTTGGAGTCTCTGAAACGCATCCATGAGATCCAGGAGGAGATGAAGAATAAAGAGCAATGGGACCAGCTTCCCAGGGAGCAGCAGCAGAGCCGACAGTCCCAGCTGACTCAGGATGAGAGAGTATCACGATCGTACCTGGCTTTAGCAACAGAGACGGTGGATATGTTTCATATCCTCACCAAACAGGTCCAGAAGCCATTCCTCAGGCCTGAACTGGGTCCTCGTCTGGCTGCCATGTTGAACTATAACCTGCAGCAGCTATGCGGGCCTAAATGTCGAGACTTGAAGGTGGAAAACCCAGAAAAATATGGTTTTGAGCCAAAGAAGCTCCTGGATCAGCTCACTGACATTTATCTGCAGCTGGACTGTGCCCGATTTGCTAAAGCCATCGCAGATGACCAGCGGTCATACAGCAGGGAGTTGTTCGAAGAGGTCAtttcaaaaatgagaaaagcGGGCATAAAATCCACCATTGCTATTGAGAAATTTAAACTGCTGTTGGAGAAGGTGGAGGAGATAGTGGCCCGCAATTCTCAGTCCGAGATGGATTACAGTGACGCCCCAGATGAGTTTAAAGACCCACTGATGGACACTCTCATGACCGATCCCGTGCAACTTCCCTCTGGCAACATCATGGATCGAGCCATCATTCTGCGACACCTCCTGAACTCTCCCACTGACCCCTTCAACAGACAGCCTCTCACCGAGAGCatgctggaaccagTCCCAGAGCTGAAGGAGCGCATCCAGGCCTGGATGAGAGAGAAGCAGACCGGCCGTATTTGAGTTTTCTCAGTGAGCCAAGCTTGCCCCgcagtttaaatgttttcaccACGCTGGAAGTGAACTGAAGAGtggagaaagaggaaaaaaaatgacagtaccCAAATTGTTTTCCCGCTTTTATCCTCTTTATCGAGCCGCTGTCTGACAGGCTCATGGTTCTAAATTGAAACATAATAAAGTTTAgacttttgaaaca

Function

symbol description
ube4b Predicted to enable ubiquitin-ubiquitin ligase activity. Predicted to be involved in protein polyubiquitination and ubiquitin-dependent ERAD pathway. Predicted to act upstream of or within protein ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to be part of ubiquitin ligase complex. Predicted to be active in cytoplasm and nucleus. Is expressed in female organism; heart; and skeletal muscle. Orthologous to human UBE4B (ubiquitination factor E4B).

NR:

description
ubiquitin conjugation factor E4 B isoform X1

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0000151 ubiquitin ligase complex cellular_component
GO:0034450 ubiquitin-ubiquitin ligase activity molecular_function

KEGG:

id description
K10597 UBE4B, UFD2; ubiquitin conjugation factor E4 B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224686.1 True 4518 mRNA 0.51 29 8999326 9018982
XM_043224687.1 False 4016 mRNA 0.50 27 8999326 9018981

Neighbor

gene id symbol gene type direction distance location
kif1b kif1b,LOC107681965,LOC107695777,LOC107716234,LOC106522667 coding downstream 1820 8934480 ~ 8997506 (-)
pgd pgd,LOC107681986,LOC107586524,LOC107716232,LOC107695776,LOC107570752,LOC107708839 coding downstream 65747 8927503 ~ 8933579 (-)
casz1 casz1,LOC107708843,LOC107586525 coding downstream 222068 8699825 ~ 8777258 (-)
LOC122329065 NA coding downstream 442295 8554507 ~ 8557031 (-)
trnai-uau_41 NA coding downstream 793810 8205423 ~ 8205516 (-)
LOC122328502 rbp7a,nmnat1-rbp7a,LOC107708837,LOC107681992,LOC107695774,LOC107586559,LOC107580544 coding upstream 544 9019526 ~ 9021081 (-)
nmnat1 nmnat1 coding upstream 4026 9023008 ~ 9026430 (-)
clstn1 clstn1,LOC107718806,LOC107681971 coding upstream 10738 9029720 ~ 9062901 (-)
pik3cd pik3cd,LOC107708832,LOC107718809,LOC107681979,LOC107695767 coding upstream 80291 9099273 ~ 9118072 (-)
foxl2l zgc:194189,LOC107570831,LOC107708788,LOC107681978,LOC107695725,LOC107586555,LOC107718823 coding upstream 101890 9120872 ~ 9122731 (-)
G155933 NA non-coding downstream 370223 8628699 ~ 8629103 (-)
G155825 NA non-coding downstream 373684 8624926 ~ 8625642 (-)
G155803 NA non-coding downstream 466399 8526402 ~ 8532927 (-)
G155759 NA non-coding downstream 616719 8307279 ~ 8382607 (-)
G155737 NA non-coding downstream 821808 8176699 ~ 8177518 (-)
LOC122329247 NA non-coding upstream 51402 9070384 ~ 9072944 (-)
G155968 NA non-coding upstream 134098 9153080 ~ 9153502 (-)
G155979 NA non-coding upstream 169531 9188513 ~ 9188897 (-)
G156051 LOC107708813,LOC107656547,LOC107571009,LOC107756377 non-coding upstream 582980 9601962 ~ 9602477 (-)
G156054 NA non-coding upstream 588506 9607488 ~ 9607948 (-)
sst6 LOC107681964,LOC107571825,LOC107695779,LOC107570713,LOC107681961 other downstream 72575 8921564 ~ 8926751 (-)
c23h1orf127 LOC107708840,LOC107570680 other downstream 79556 8913062 ~ 8919770 (-)
G155827 NA other downstream 370935 8625758 ~ 8628391 (-)
G155807 NA other downstream 447349 8545394 ~ 8551977 (-)
G155596 sox18,LOC107727030,LOC107681403,LOC107551552,LOC107666636,LOC107705673,LOC107571663 other downstream 1721003 7276448 ~ 7278323 (-)
ctnnbip1 ctnnbip1 other upstream 60550 9079532 ~ 9097302 (-)
ccdc187 LOC107708822,LOC107570908,LOC107718813,LOC107656553,LOC107695760,LOC107586514 other upstream 176328 9195310 ~ 9209964 (-)
hmgn3 hmgn3,LOC107756386,LOC107671890 other upstream 782803 9801785 ~ 9808369 (-)
zgc:153284 LOC107701733,LOC107571300,LOC107756391,LOC107549061,LOC107708783 other upstream 812827 9831809 ~ 9833682 (-)
ankrd52a ankrd52a,ankrd52,LOC107594018,LOC107756410,LOC107549041,LOC108432261,LOC107671831,LOC107723718 other upstream 1199491 10218473 ~ 10385967 (-)

Expression


Co-expression Network