LOC122328766 (sdcbp2,LOC107657068,LOC107672005)


Basic Information

Item Value
gene id LOC122328766
gene name sdcbp2,LOC107657068,LOC107672005
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 10662263 ~ 10674097 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224691.1
ACACGCACGTACTTTCTCGAGATCACCTCCCCTCTGTTCACTTCACCGCACCAACCTAAAGGGGAAAAGAGTCCCGTTTACTGTGCTCGGCTTGTTTACATTCTTCACCATCACATTTACCATATTCTTCAGAAGTCAGTCGTCAGAAAGCAGGAAGgATGTCATTGTATCCATCCCTAGAGGACCTTAAAGTGGACAAGGTCATTAGGGCACAGTCCCAGTTTGCCAATGCCACCTCCAGCACCCCAGCCATCACTCAGGGTGTTTACCAGCCACAGCCTGCCACACAGGGGATGCCAAGCTCAGCTCTGTATCCCAATCTGGAGGAGCTGGGAGACTATATGGGCCTGAGTCTGAACAGCGATGAGGTCCAGAGAAACCTGGCGCTGGTCCCGGTGGCTGACAATCAAGTGGCAGTGCCAAGTTCTGTGGGTGGCATGGTGCGGCCCGTGACCGGTGCAGACGTGGGCATCAGGAGGGCAGAGATTCGTCCAGGTCTTCGGGAGGTCATCATCTGCAAAGACCAGGAAGGAAAGGTCGGGCTTCGACTCCGAGATATTGATAATGGAGTGTTTGTCCAGCTGGTGCAGGCGAACTCTCCTGCGGCGTTGGGTGGCCTGCGTTTTGGAGATCAGGTTCTGCAGATCAATGGGCAGAACGTTGCTGGCTGGAGCTCAGATAAGGCCCACAAAGCTCTGAAGGCAGCAGCTGAACAGCGCATCGAGCTCATTGTCCGTGACAGACCATTCCAGCGTACAGTCACAATGCATAAGGACAGCTCTGGCCATGTGGGCTTCATCTTCAAATCTGGACGAATCACATCTCTAGTGAAGGATGGTTCTGCTGCCCGCAATGGTTTGCTCACCGAGCACTACATCTGTGAGATCAACGGCCAGAACGTCATCGGACTCAAGGACACTCAGATTAAAGACATCCTCACCACATCTCCCACTGCCATGACCATCACCATCATGCCTAAATTTATCTACGAACACATGATTAAgaaGATGTCAAGCGGCCTGTTGAAGTCCTCCATGGATCACTCTGTGCCTGAGGTCTGAACACAggagaccacacacacacagcccctTCCACAATGCCTACAATCTCTTGCCTTCCCATTGGAGCCTTCCACAACATGGGTCGTCTATCACTGATTGGATAAACCTCCTCAATCACATTCATTTATAACATGTAAAAACTGCCTTTTTTCTATTTCACTCGTTGGCTGTTATCGTTTTGCCTTCTAGTTCTTGATTCTGTCCTACATGTCATTGTTGCCATTGTTTAATTGTCATATtacatgttatataataataatccattGTCATTATTGAGTAGTATTatctgattgttttattttggctgaGGGGCAAGGGGATAAAAACTGAACCTGAGCTTCCGTTTTGGAGAGCATTAGCTTCAACACTCCACTTTTCAATTCTTCCCACTATGCACAAACACTTTctttccatttctgtttttgtttttttattttttatcgaCCATCTATATGCCAAGACAGCTGTATTCTGCCAGAAGGAATCTTGGGCCAGaatttataaatgcaacaaCTCATTTCGTATTGATTTTGAACTTGGTTTTTAGGTGTTTAATCTTTGATAATATTCTCTGTCATTATCCTGTAAATGTTAGtgtctctaaaaaaaaaaatttatatacgAATGTAA

Function

symbol description
sdcbp2 Enables phosphatidylinositol-3,4-bisphosphate binding activity and syndecan binding activity. Acts upstream of or within several processes, including epiboly involved in gastrulation with mouth forming second; response to hypoxia; and synapse assembly. Predicted to be active in cytoplasm and plasma membrane. Is expressed in gill; oocyte; and spinal cord. Orthologous to several human genes including SDCBP2 (syndecan binding protein 2).

NR:

description
PREDICTED: syntenin-1-like

GO:

id name namespace
GO:0045545 syndecan binding molecular_function

KEGG:

id description
K17254 SDCBP; syntenin-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224691.1 True 1691 mRNA 0.46 9 10662263 10674097

Neighbor

gene id symbol gene type direction distance location
LOC122328736 LOC107672006,LOC107603149,LOC107707753,LOC107657067 coding downstream 79833 10568565 ~ 10582430 (-)
LOC122328446 LOC107707743,LOC107671949,LOC107657006,LOC107603135,LOC107559475 coding downstream 136891 10522098 ~ 10525372 (-)
LOC122328445 zgc:173570,LOC107657062,LOC107559474,LOC107747974 coding downstream 141191 10516716 ~ 10521072 (-)
LOC122329230 dnajc11a,LOC107708818,LOC107701714,LOC107756372,LOC107586512,LOC107656549,LOC108433830 coding downstream 205345 10449485 ~ 10456918 (-)
LOC122328599 LOC107570968,LOC107656538,LOC107708815,LOC107756373,LOC107701716,LOC107586510 coding downstream 215045 10432764 ~ 10447218 (-)
LOC122328797 LOC107747975,LOC107657065,LOC107672050,LOC570014,LOC107559461,LOC107559462,LOC107747988,LOC107603112 coding upstream 4908 10679005 ~ 10686715 (-)
LOC122328796 LOC107747975,LOC107657065,LOC107672050,LOC570014,LOC107559461,LOC107747988,LOC107603112 coding upstream 15567 10689664 ~ 10694950 (-)
cdc42l2 LOC107603155,LOC107707751,LOC107672009 coding upstream 31886 10705983 ~ 10709169 (-)
dnmt3bb.2 LOC107707749,LOC107747973,LOC107559473,LOC107657061,LOC107603113 coding upstream 35249 10709346 ~ 10727569 (-)
dnmt3bb.1 dnmt3bb.1,LOC107672053,LOC107657059,LOC107747976,LOC107563667,LOC107603157,LOC108276083 coding upstream 55964 10730061 ~ 10765008 (-)
G156452 NA non-coding downstream 119376 10540899 ~ 10542887 (-)
G156364 NA non-coding downstream 273648 10386954 ~ 10388615 (-)
G156341 NA non-coding downstream 310382 10348141 ~ 10351881 (-)
LOC122328389 NA non-coding downstream 368220 10291465 ~ 10294043 (-)
G156313 NA non-coding downstream 545308 10112617 ~ 10116955 (-)
G156468 NA non-coding upstream 22355 10696452 ~ 10696677 (-)
G156469 NA non-coding upstream 24500 10698597 ~ 10700224 (-)
G156471 NA non-coding upstream 28499 10702596 ~ 10702821 (-)
G156478 NA non-coding upstream 53867 10727964 ~ 10728248 (-)
LOC122329022 NA non-coding upstream 206494 10880591 ~ 10882652 (-)
ankrd52a ankrd52a,ankrd52,LOC107594018,LOC107756410,LOC107549041,LOC108432261,LOC107671831,LOC107723718 other downstream 276296 10218473 ~ 10385967 (-)
LOC122328779 taf8,LOC107723763,LOC107756368,LOC107549030,LOC107671856,LOC107594013,LOC107701755 other downstream 294894 10363905 ~ 10367369 (-)
LOC122329224 NA other downstream 302477 10355941 ~ 10359786 (-)
zgc:153284 LOC107701733,LOC107571300,LOC107756391,LOC107549061,LOC107708783 other downstream 828581 9831809 ~ 9833682 (-)
hmgn3 hmgn3,LOC107756386,LOC107671890 other downstream 853894 9801785 ~ 9808369 (-)
LOC122328798 fkbp1ab,fkbp1a,LOC107707744,LOC107657066,LOC107747971,LOC108435222,LOC107559476,LOC100705189,LOC105013763,LOC101476936 other upstream 1583 10675680 ~ 10678150 (-)
G156746 NA other upstream 426647 11100744 ~ 11105223 (-)
LOC122328546 rpl10 other upstream 1067303 11741400 ~ 11746620 (-)
LOC122329329 NA other upstream 1071165 11745262 ~ 11745395 (-)
atp2b3b atp2b3b,atp2b3,LOC107737604,LOC107712727,LOC107672007,LOC107593407 other upstream 1089612 11763709 ~ 11857968 (-)

Expression


Co-expression Network