LOC122328770 (pifo)


Basic Information

Item Value
gene id LOC122328770
gene name pifo
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 10243928 ~ 10280539 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224693.1
gTTCGTCACGTTTACTCCCCGTTATACTTTTACCAACACGGTGGAaacgccttttttttttttttttttgcaggaagtGTTTTGTGGTTGCATTCGAAGACAGGACGTAAAAATTTGTCGAGCGTTTTTAACTGCACGTGCCAGGAAAAATGCAGTGCAAAGGGAAATGCCTCCGCTAACAATCCTAATTACCCAGCAATCGCGAAACATGTCAATACGGCTCTGCGACATGTGATTCGCTCGAGTGTTTGTAAACATGCGTCAAAAGCATGTGATTCTGCTGACGACATATTGCGCTCAAGACGGACAGCCAATCGGAACACGGGGGTGTGCGCCCTGGGCGTGGCCTCGTTGTGGCTCTGTGGAAAATTCGATGTGCGCGGCATCGAGACTctttataatttgaaaaatgaagTTCAAGACGATAGCGTCCATCGTTTGGCATCGCCAGCAGACAGAATAAAGACACGTTTGCTCAGtgaatgCGGGATGAAGAGCGACCCCAGCACTGCAAAGGAAACGCATAATTTCATTGATCGAACGACTTCTGGATACATCGGAATTCCATCTGATCCACATCATCAGCATTCGTTTGCACCTGGATACCATGGTAACAAGTAAACATCAGGACGCTATGACGACACGGGGCGCAGCTCCACGGGTCGCGTTCGGCAGCTGCCAGAAACGCCTGATGTTTCCAATGCACTTTGCGCCTGATCGCATGGGCAATGAAATGCTCGCGCTCCACGGCTCCACAGAACTAGGACCCGGATGTTACGACAACCACACGGTGGGCACTCTTACATATGAGCTCCAACACAGACCTGAGAGCAAGAGGGGATATGTGTTTGCAGCGCGCACTGCACCACGCTTTTTGCCTCCAGTTAAAACGGCCACCCCTTCGCCAGAGAAATACCAGCAAGACTGGACTCGGTCTAAAGTGTGTCCTCCTGGAAAAGCTCCCTTCAATAGTACCACTGCAAAATTCAAACATCCAAACACAGACTCCAGCCCTggTCCAGGGGCATATGTTCATGGCAGCATCCAAAGCAAAAAGGTGTCATGGCCTATGAAATTCAGCTCTCCAGACTGGACAAAAGTGCCATCGCTGGAGAGAAGAGCACTGCGTACAGAGCTCTACCATGACAAAGAGTTTAGGAAACAGAGGAACAGGGTGGCTTATCTAAGCTTGTTTTACTGATCACTCGAACTACCACAAGAATTCAGCGTGACtatcaaatgcataaaaacattaaagatttATACTTCCTATTTCA
>XM_043224695.1
gTTCGTCACGTTTACTCCCCGTTATACTTTTACCAACACGGTGGAaacgccttttttttttttttttttgcaggaagtGTTTTGTGGTTGCATTCGAAGACAGGACGTAAAAATTTGTCGAGCGTTTTTAACTGCACGTGCCAGGAAAAATGCAGTGCAAAGGGAAATGCCTCCGCTAACAATCCTAATTACCCAGCAATCGCGAAACATGTCAATACGGCTCTGCGACATGTGATTCGCTCGAGTGTTTGTAAACATGCGTCAAAAGCATGTGATTCTGCTGACGACATATTGCGCTCAAGACGGACAGCCAATCGGAACACGGGGGTGTGCGCCCTGGGCGTGGCCTCGTTGTGGCTCTGTGGAAAATTCGATGTGCGCGGCATCGAGACTctttataatttgaaaaatgaagTTCAAGACGATAGCGTCCATCGTTTGGCATCGCCAGCAGACAGAATAAAGACACGTTTGCTCAGTCAAATATACAGGTGATTCTTggaaagaatgaaaatgaagGTGGAGATTGCAGGGAGGAGGAGGGTTTTCTGCTGCGACAAaggtgtgcgtgcgtgcgtgcgtgcgtggtTGGCCTAGACTACTTGGCGTGGCAAAGATAGGATGTTACGCAGTTCTTATTTACAACCCAGTGTGCTTCGCCCTGACCCGTGTAATGTTTTCATCTCggtcagacagacagaataCCGTCTAACAGtgaatgCGGGATGAAGAGCGACCCCAGCACTGCAAAGGAAACGCATAATTTCATTGATCGAACGACTTCTGGATACATCGGAATTCCATCTGATCCACATCATCAGCATTCGTTTGCACCTGGATACCATGGTAACAAGTAAACATCAGGACGCTATGACGACACGGGGCGCAGCTCCACGGGTCGCGTTCGGCAGCTGCCAGAAACGCCTGATGTTTCCAATGCACTTTGCGCCTGATCGCATGGGCAATGAAATGCTCGCGCTCCACGGCTCCACAGAACTAGGACCCGGATGTTACGACAACCACACGGTGGGCACTCTTACATATGAGCTCCAACACAGACCTGAGAGCAAGAGGGGATATGTGTTTGCAGCGCGCACTGCACCACGCTTTTTGCCTCCAGTTAAAACGGCCACCCCTTCGCCAGAGAAATACCAGCAAGACTGGACTCGGTCTAAAGTGTGTCCTCCTGGAAAAGCTCCCTTCAATAGTACCACTGCAAAATTCAAACATCCAAACACAGACTCCAGCCCTggTCCAGGGGCATATGTTCATGGCAGCATCCAAAGCAAAAAGGTGTCATGGCCTATGAAATTCAGCTCTCCAGACTGGACAAAAGTGCCATCGCTGGAGAGAAGAGCACTGCGTACAGAGCTCTACCATGACAAAGAGTTTAGGAAACAGAGGAACAGGGTGGCTTATCTAAGCTTGTTTTACTGATCACTCGAACTACCACAAGAATTCAGCGTGACtatcaaatgcataaaaacattaaagatttATACTTCCTATTTCA
>XM_043224696.1
aaaaacacgTTCGTCACGTTTACTCCCCGTTATACTTTTACCAACACGGTGGAaacgccttttttttttttttttttgcaggaagtGTTTTGTGGTTGCATTCGAAGACAGGACGTAAAAATTTGTCGAGCGTTTTTAACTGCACGTGCCAGGAAAAATGCAGTGCAAAGGGAAATGCCTCCGCTAACAATCCTAATTACCCAGCAATCGCGAAACATGTCAATACGGCTCTGCGACATGTGATTCGCTCGAGTGTTTGTAAACATGCGTCAAAAGCATGTGATTCTGCTGACGACATATTGCGCTCAAGACGGACAGCCAATCGGAACACGGGGGTGTGCGCCCTGGGCGTGGCCTCGTTGTGGCTCTGTGGAAAATTCGATGTGCGCGGCATCGAGACTctttataatttgaaaaatgaagTTCAAGACGATAGCGTCCATCGTTTGGCATCGCCAGCAGACAGAATAAAGACACGTTTGCTCAGtgaatgCGGGATGAAGAGCGACCCCAGCACTGCAAAGGAAACGCATAATTTCATTGATCGAACGACTTCTGGATACATCGGAATTCCATCTGATCCACATCATCAGCATTCGTTTGCACCTGGATACCATGGTAACAAGTAAACATCAGGACGCTATGACGACACGGGGCGCAGCTCCACGGGTCGCGTTCGGCAGCTGCCAGAAACGCCTGATGTTTCCAATGCACTTTGCGCCTGATCGCATGGGCAATGAAATGCTCGCGCTCCACGGCTCCACAGAACTAGGACCCGGATGTTACGACAACCACACGACGGCCACCCCTTCGCCAGAGAAATACCAGCAAGACTGGACTCGGTCTAAAGTGTGTCCTCCTGGAAAAGCTCCCTTCAATAGTACCACTGCAAAATTCAAACATCCAAACACAGACTCCAGCCCTggTCCAGGGGCATATGTTCATGGCAGCATCCAAAGCAAAAAGGTGTCATGGCCTATGAAATTCAGCTCTCCAGACTGGACAAAAGTGCCATCGCTGGAGAGAAGAGCACTGCGTACAGAGCTCTACCATGACAAAGAGTTTAGGAAACAGAGGAACAGGGTGGCTTATCTAAGCTTGTTTTACTGATCACTCGAACTACCACAAGAATTCAGCGTGACtatcaaatgcataaaaacattaaagatttATACTTCCTATTTCA

Function

symbol description
pifo Enables cytoskeletal protein binding activity and enzyme binding activity. Involved in positive regulation of kinase activity. Predicted to be located in trans-Golgi network. Predicted to be active in ciliary basal body.

NR:

description
PREDICTED: protein pitchfork

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224693.1 False 1277 mRNA 0.48 8 10243928 10280531
XM_043224695.1 True 1513 mRNA 0.48 9 10243928 10280531
XM_043224696.1 False 1186 mRNA 0.48 7 10243928 10280539

Neighbor

gene id symbol gene type direction distance location
rnf41 rnf41,LOC107723732,LOC107756409 coding downstream 31501 10204039 ~ 10212427 (-)
dgkaa dgkaa,dgka,LOC107549042,LOC107671885,LOC107701752,LOC107594021,LOC107756407 coding downstream 41121 10177186 ~ 10202807 (-)
tamalin grasp,LOC107723769,LOC107594022,LOC107549045,LOC107671830 coding downstream 67886 10162782 ~ 10176042 (-)
nr4a1 nr4a1,LOC107671891,LOC107723761,LOC107572787,LOC107756405,LOC107701750,LOC107549046 coding downstream 98476 10140150 ~ 10145452 (-)
rprm3 zgc:92658,LOC107701713,LOC107671842,LOC107723728,LOC107572774,LOC107549031,LOC107756367 coding downstream 111769 10131006 ~ 10132159 (-)
LOC122328780 NA coding upstream 62711 10343250 ~ 10346092 (-)
LOC122328599 LOC107570968,LOC107656538,LOC107708815,LOC107756373,LOC107701716,LOC107586510 coding upstream 152225 10432764 ~ 10447218 (-)
LOC122329230 dnajc11a,LOC107708818,LOC107701714,LOC107756372,LOC107586512,LOC107656549,LOC108433830 coding upstream 168946 10449485 ~ 10456918 (-)
LOC122328445 zgc:173570,LOC107657062,LOC107559474,LOC107747974 coding upstream 236177 10516716 ~ 10521072 (-)
LOC122328446 LOC107707743,LOC107671949,LOC107657006,LOC107603135,LOC107559475 coding upstream 241559 10522098 ~ 10525372 (-)
G156313 NA non-coding downstream 126973 10112617 ~ 10116955 (-)
G156283 NA non-coding downstream 184625 10058011 ~ 10059303 (-)
G156278 NA non-coding downstream 190379 10052526 ~ 10053549 (-)
G156264 NA non-coding downstream 226507 10016456 ~ 10017421 (-)
G156261 NA non-coding downstream 291897 9951143 ~ 9952031 (-)
LOC122328389 NA non-coding upstream 10926 10291465 ~ 10294043 (-)
G156341 NA non-coding upstream 67602 10348141 ~ 10351881 (-)
G156364 NA non-coding upstream 106415 10386954 ~ 10388615 (-)
G156452 NA non-coding upstream 260360 10540899 ~ 10542887 (-)
G156459 NA non-coding upstream 387418 10667957 ~ 10675579 (-)
zgc:153284 LOC107701733,LOC107571300,LOC107756391,LOC107549061,LOC107708783 other downstream 410246 9831809 ~ 9833682 (-)
hmgn3 hmgn3,LOC107756386,LOC107671890 other downstream 435559 9801785 ~ 9808369 (-)
ccdc187 LOC107708822,LOC107570908,LOC107718813,LOC107656553,LOC107695760,LOC107586514 other downstream 1033964 9195310 ~ 9209964 (-)
ctnnbip1 ctnnbip1 other downstream 1146626 9079532 ~ 9097302 (-)
sst6 LOC107681964,LOC107571825,LOC107695779,LOC107570713,LOC107681961 other downstream 1317177 8921564 ~ 8926751 (-)
LOC122329224 NA other upstream 75402 10355941 ~ 10359786 (-)
LOC122328779 taf8,LOC107723763,LOC107756368,LOC107549030,LOC107671856,LOC107594013,LOC107701755 other upstream 83366 10363905 ~ 10367369 (-)
LOC122328798 fkbp1ab,fkbp1a,LOC107707744,LOC107657066,LOC107747971,LOC108435222,LOC107559476,LOC100705189,LOC105013763,LOC101476936 other upstream 395141 10675680 ~ 10678150 (-)
G156746 NA other upstream 820205 11100744 ~ 11105223 (-)
LOC122328546 rpl10 other upstream 1460861 11741400 ~ 11746620 (-)

Expression


Co-expression Network