lima1a (LOC107714990,LOC107664165,LOC107593956,LOC107706995,LOC107697921)


Basic Information

Item Value
gene id lima1a
gene name LOC107714990,LOC107664165,LOC107593956,LOC107706995,LOC107697921
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 18162460 ~ 18177490 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224702.1
CCTCCCATTGGCTGAGAGGAGTCAGTATATTTCCTCACTCACAAACAATGTGAGAGTGAGCAGAGGCAGAGTGTTCAGAGCATTgagaagacagacagagaagcCAACAAGAAAACTATCAGCACATCCACTCAAAGACTGCGGGTTCAAAAAATCCTACTGAAGGCATCAAGATGGCAGTCAGTTCATTTCATCGCGGTCAGTGGTCCTCACAGTCCTTGCGAGTCACAGCAAAGGAGCTCTCCATCGTAGGCGTGCGAGGCAAAAACACGGCCATTGCTGAGAGATTTTCCAAGTACCAGAAGGCAGCAGAAGAAACAAGTTCAGACAAGAAAAAATCGGAGAAGTCGACTCCTTCCTCGCGCAACGGCAATCTGAGTGTCCTAAAGCAGCTCTGGGAACAACCAGCTGAAACGCCTCCATCTCCAGAACCCAAAACACACTCCAGACAGCAGGAGAACCATCAGCGACAGCCTTCATATCCCGCTGTTAACACCTCTCCGGAGTCTACAGACGGCCAGCTTGTTGACGGCACAGAGACCCAGTTGTTGAGCGACAGCGACCAGGAGATGGAGAAGTGGACGCAGAGAGACATGCCCATCGAAAAGCCCACAGTGCCTCTCAACAGTCTGAAGATGATGTTTGAGAAAGGCGAGACCTTTCACAACAATGTGTCCAGAGAACCTGGGAAAACAGGAGACGGTGGATCAGAGAACATGGACGATAAAGAAAGTCTTGACTCCGGAGTCAAAATGGTGGAGTCCACCCCTCTTAGGGACCGAATGGCCATGTACCAGGCAGCTGTGACCAAGCACGATTTCCCTTCCTCCCCCACTAGTGAACCAGCAGACAATGAAGTCCGCAGTCACAGTGTGAAGCAGAAGGAAAATGTGCCGCCAGTGTCTCCTGATGTGGGCTCTGAATCTAACTCTATGAAAAGTCCCAATTCAGACAGGAATGGCTCCGTTATAAGtcctgaacaaaaccagcctaAAACTGTTAGGATGTTCCGTCTGCCTGTCCGTGAAACCTGCATCATGTGCCTTAAGACCGTGTACCCGCTAGAGAAACTCGTAGCGAATCAGCAGATTTACCACAACACCTGCTTCCGCTGTGCCTACTGCAACACTAAACTCAGTCTGGTGAACTACGCCTCTTTGCACAACAACGTCTACTGCAAGCCGCACTACTGTCAGCTGTTTAAAGCCAAGGGCAACTATGATGAGGGATTTGGCCACCGACCCCACAAAGAGCTTTGGGAGGTGAGAGGAGAAGGAGCCGAGGAGCAAGTGAAGCTGTCACCTCAAGAAACCACATCCAGCCCAACAGTAGAGGAGTCTTCGCTGGTAAAAGTTAACGTGCTTGAGGCCACTTTAGAAACCCGAACCCAGGCCACCTCTGAGAGGTTGGAGAAGCCACTGGAGACCGGGCGACTCAAAATATCCTGGCCTCCACAGTCAGAAGGGGACGAGACTGCAAGCCAGGTGTGTGGATCTACAGAGGCCAGTGGCATCAAACCCATCCGCCCGAAATGGCCTCCAGAGGGCGACACGGTATCAAGCAACGCAGACCAATCTGATCTCCCAAAGATTCGCAGGAGCGTCTCTCTCAAGGAGAGAAGCAAGCCGTTTTCCATCTTCAGCTCTGCTCCGGTCACTCAAACCAGCAAGATTTGCCAAAGATCTCCTTCAATCGAGAAGCCAAGCTCGGAGGAGGAAATGTCACCCGTTTCTTCCACCACCGACACGGTGATCTCTTCCGAAGACATGACCGAACACAACCAATCAGAAGATGAGGAACAAGGTGAAACAGAAACCAAGGAGGAACGCGACGAGGAAACGATGGAACAGGAGGAGAAAGTGGAAGCGCAAGAAGAGGACCTTTCCTCCCTGAAATGCAGCTCACCGGACAACAGTCCTTCATCGTCGCCCGAGAGCGAGTCTGGGTTGGACCCAGAGGAGAACCAAGCCTCGCAAGATGTGGGATTTTGGGATGGAGAAGAAGCTGAAGACGACAGAGCTGATGTTTCTGTGGAGGACCTCATTAAGAGGAATCGCCATTATTACGACGAGGACGAGGACGAGGATGATGTGGTCTGAGTGATAGATTAGATGTCCCTGAACTTTAATTTCCCAGAAGCACCAGCGTATTTTCATGTAGTCTTTTCATGTGGGTCTTTGTCTGTCTTTCGTGCAGTTTTGTCTTCTTCATGTTTTCAGCTTATACACGTGCCTATCAATGTAAATGAACGGAAAACCAAGTAGTTGGCAGGTTATTCATAAGGTTTCTCTAGTCTAGATGATGATGCACTAGTTCAGACGTCTCCTCAAGCCTAGttttatgaaattttaattcGTTTGGtactttttctatgttttatatattaacagGCTGGAACATTTTATTCAGCTGCTGTTCCAACTTCAGAAAATTTGCATctctaacaataaaaaaaaaaaaaaaaaaaatgttgctgttgctttaagaattaaatttgattattaGGCCAATCTTAGTGTTTAATTCAAACACCCATCTTTATTTCACACAAGAGGTCTATCACTACTGTAATGCACTTGGATGTACTTTAGAGGTTAAACACCCCCGCTGCACCACATTTAATAGGATTGGCaacctttaaatgttttagtttattgcaaaattgtatttaactattttaaatgtcactttttatcaTGGGACCAAATTTCTTGGAAtacttttgtttcaaataaatttacTACTACAAAA

Function

NR:

description
LIM domain and actin-binding protein 1-like isoform X2

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K23026 LIMA1, EPLIN; LIM domain and actin-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224702.1 True 2751 mRNA 0.47 11 18162460 18177490

Neighbor

gene id symbol gene type direction distance location
igfbp6b igfbp6b,LOC107714992,LOC107664167,LOC107593959,LOC107697925,LOC107599019,LOC105912701 coding downstream 38756 18120295 ~ 18123704 (-)
pip4k2ca pip4k2ca,LOC107714989,LOC107598997,LOC107664235,LOC107697923,LOC107593957 coding downstream 46134 18107885 ~ 18116326 (-)
gpr182 gpr182,LOC107664254,LOC107697920,LOC107593955,LOC107706991,LOC107599064 coding downstream 57340 18102311 ~ 18105120 (-)
tspan31 tspan31,tsn31,LOC107599072,LOC107593953 coding downstream 91497 18065270 ~ 18070963 (-)
LOC122329235 LOC107714952,LOC107664261,LOC107594045,LOC107599127,LOC107706987,LOC107697913 coding downstream 224881 17935574 ~ 17937579 (-)
copz1 copz1,LOC107664248 coding upstream 37088 18214578 ~ 18220380 (-)
hoxc3a LOC107714998,LOC107593965,LOC107664206,LOC107697835,LOC107706962 coding upstream 137343 18314833 ~ 18316762 (-)
hoxc4a hoxc4a,hoxc4,LOC107664204,LOC107714997,LOC107598886,LOC108433407,LOC103034018 coding upstream 139147 18316637 ~ 18330701 (-)
hoxc5a hoxc5a,LOC107664112,LOC107593967,LOC107664111,LOC107697940,LOC107715000,LOC107706972,LOC107598908 coding upstream 161559 18339049 ~ 18341234 (-)
hoxc8a hoxc8a,hoxc8,LOC107598875,LOC107697938,LOC107593970,LOC107664222,LOC107707008,LOC108433404 coding upstream 178171 18355661 ~ 18358381 (-)
G158882 NA non-coding downstream 118984 18041910 ~ 18043476 (-)
G158892 NA non-coding downstream 146583 18012126 ~ 18015877 (-)
G158887 NA non-coding downstream 160770 17999833 ~ 18001690 (-)
G158774 NA non-coding downstream 218300 17943925 ~ 17944160 (-)
LOC122328377 NA non-coding downstream 318358 17799842 ~ 17844102 (-)
G158947 NA non-coding upstream 15480 18192970 ~ 18193557 (-)
G158946 NA non-coding upstream 16762 18194252 ~ 18194524 (-)
G158948 LOC107599665,LOC107664257,LOC107714993,LOC107697859,LOC107706997 non-coding upstream 17909 18195399 ~ 18196369 (-)
G158949 NA non-coding upstream 23277 18200767 ~ 18200966 (-)
G158950 NA non-coding upstream 25546 18203036 ~ 18203452 (-)
march9 march9,LOC107593952,LOC107664138,LOC107714987,LOC107706970,LOC107599679,LOC107697857,LOC107088728,LOC108433385,LOC103130462,LOC105930772 other downstream 103721 18045926 ~ 18058739 (-)
coq10a si:dkey-190g6.2,LOC107671896,LOC107715030,LOC107598614,LOC107697969,LOC102210977,LOC108425511,LOC102797363 other downstream 739943 17413703 ~ 17422517 (-)
G158609 NA other downstream 819075 17339267 ~ 17343385 (-)
slc48a1a slc48a1a,LOC107671836,LOC107598487,LOC107594008,LOC107756371,LOC107697869,LOC107757747 other downstream 978075 17176625 ~ 17184385 (-)
G158336 LOC107716221,LOC107570608,LOC107586536,LOC106567035 other downstream 1803755 16355369 ~ 16358705 (-)
hnrnpa1b hnrnpa1b,LOC107664187,LOC107714994,LOC107707002 other upstream 54153 18231643 ~ 18235536 (-)
hoxc1a LOC107598919,LOC107707004,LOC107697929,LOC107594049,LOC107664160,LOC107714959 other upstream 118556 18296046 ~ 18302575 (-)
hoxc6a hoxc6a,LOC107593966,LOC107664205,LOC107714999,LOC107706971,LOC107697939,LOC107598897 other upstream 164844 18342334 ~ 18350347 (-)
G159076 LOC107715021,LOC107664216,LOC107593990,LOC107598736,LOC107697953,LOC107707026 other upstream 569901 18747391 ~ 18754712 (-)

Expression


Co-expression Network