Gene
RNA
| Item | Value |
|---|---|
| gene id | XLOC_006824 |
| gene name | syne2b |
| gene type | coding |
| species | zebrafish (Danio rerio) |
| category of species | model fish |
| Item | Value |
|---|---|
| chromosome id | NC_007124.7 |
| NCBI id | CM002897.2 |
| chromosome length | 52186027 |
| location | 37248998 ~ 37254777 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| symbol | description |
|---|---|
| syne2b | Predicted to enable actin filament binding activity. Predicted to be located in membrane and nuclear envelope. Predicted to be integral component of membrane. Predicted to be part of meiotic nuclear membrane microtubule tethering complex. Is expressed in heart; neural keel; primary neuron hindbrain; primary neurons; and shield. Human ortholog(s) of this gene implicated in autosomal dominant Emery-Dreifuss muscular dystrophy 5. Orthologous to human SYNE2 (spectrin repeat containing nuclear envelope protein 2). |
| id | name | namespace |
|---|---|---|
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0003779 | actin binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-071218-5 | Predicted to enable actin filament binding activity. Predicted to be located in membrane and nuclear envelope. Predicted to be integral component of membrane. Predicted to be part of meiotic nuclear membrane microtubule tethering complex. Is expressed in heart; neural keel; primary neuron hindbrain; primary neurons; and shield. Human ortholog(s) of this gene implicated in autosomal dominant Emery-Dreifuss muscular dystrophy 5. Orthologous to human SYNE2 (spectrin repeat containing nuclear envelope protein 2). |
| ensembl_id | ENSDARG00000053484 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TCONS_00013126 | True | 841 | mRNA | 0.46 | 7 | 37248998 | 37254777 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| XLOC_006823 | si:dkeyp-77c8.5 | coding | downstream | 19753 | 37227050 ~ 37229245 (-) |
| XLOC_006822 | si:dkeyp-77c8.4 | coding | downstream | 38629 | 37208460 ~ 37210369 (-) |
| XLOC_006821 | si:dkeyp-77c8.3 | coding | downstream | 48878 | 37199298 ~ 37200120 (-) |
| XLOC_006820 | si:dkeyp-77c8.2 | coding | downstream | 59438 | 37186303 ~ 37189560 (-) |
| XLOC_006818 | si:dkeyp-77c8.1 | coding | downstream | 68183 | 37171976 ~ 37180815 (-) |
| XLOC_006825 | kcnh5b | coding | upstream | 47798 | 37302575 ~ 37383625 (-) |
| XLOC_006826 | ppp2r5eb | coding | upstream | 166556 | 37421333 ~ 37465542 (-) |
| XLOC_006827 | wdr89 | coding | upstream | 214316 | 37469093 ~ 37474989 (-) |
| XLOC_006828 | sgpp1 | coding | upstream | 237027 | 37491804 ~ 37519817 (-) |
| XLOC_006829 | NA | coding | upstream | 273384 | 37528161 ~ 37535785 (-) |
| XLOC_006471 | BX537274.2 | misc | downstream | 26984093 | 10264741 ~ 10264905 (-) |
| XLOC_006338 | rn7sk | misc | downstream | 36422773 | 825904 ~ 826225 (-) |
| XLOC_006819 | AL845493.1 | non-coding | downstream | 70282 | 37178602 ~ 37178716 (-) |
| XLOC_006817 | NA | non-coding | downstream | 138462 | 37110212 ~ 37110536 (-) |
| XLOC_006815 | NA | non-coding | downstream | 236762 | 37009812 ~ 37012236 (-) |
| XLOC_006814 | NA | non-coding | downstream | 251238 | 36995633 ~ 36997760 (-) |
| XLOC_006804 | BX927407.1 | non-coding | downstream | 636839 | 36587770 ~ 36612159 (-) |
| XLOC_006836 | NA | non-coding | upstream | 377849 | 37632626 ~ 37636598 (-) |
| XLOC_006842 | NA | non-coding | upstream | 935744 | 38190521 ~ 38195214 (-) |
| XLOC_006843 | NA | non-coding | upstream | 1358448 | 38613225 ~ 38619719 (-) |
| XLOC_006846 | BX323574.1 | non-coding | upstream | 1598360 | 38853137 ~ 38853252 (-) |
