LOC122328797 (LOC107747975,LOC107657065,LOC107672050,LOC570014,LOC107559461,LOC107559462,LOC107747988,LOC107603112)


Basic Information

Item Value
gene id LOC122328797
gene name LOC107747975,LOC107657065,LOC107672050,LOC570014,LOC107559461,LOC107559462,LOC107747988,LOC107603112
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 10679005 ~ 10686715 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224763.1
GAACAGCCCACGCCCATGTTGCAACAAGTATAAGAGGCACTAAAAGGCTGTAACTGGTAACTCTTTCACAACTTAACGATGGCCAACAGTCGTAGTGCACTGGACAAACAAGCAGACGACAGCATCTGTGCCACAGAAAATGACGACAATCAACCGAAAAATCCAGGCATCCCTTTCTCCAGGAAACTGTGCTATGCAGTTGGAGGAATGCCTTATCAAATGACTGCAAACGCCAAGggctttttcatgcagatctTTTTACTGGATGTTGTGAAGATGGAAGCTTTCTCTGCATCCATCATTCTCTTCCTTGGTCGGGCTTGGGATGCTGTTACAGATCCTCTGATAGGATATGCCGTGAGTAAGAGTGGCCGGACCAGAATTGGCAAACTTATCCCTTGGATTGTGTTCTCGATGCCACTTGGGGTCCTATCATACGTTATGCTCTGGTATACCCCACAGGACACCATGTCCTCTGGCTTCAGTTTCGGCTGGTACTTCACATGGTGCTGTCTGTTTGACACCTTCATGAGTTGCTACCATGTGCCATATTCTTCCCTAAACATGTTTCTGGGGGGGAATCAGAAGGATCGAGACTCGGCCACTGGATACAGAATGGGCATGGAAGTGTTCGCTACACGCGGAGCTGCCATTCAGGGTCAGATAGTGGGAGTGCACCATGCCAAGAGGACACACGCCTGCAGTTTACAGAACGCCACGGAAGGGGTTTCTGGGAACTATACTGAATCTCTGGATGGCATATCTGATGCTCTACGAAATACAAGAAAAGCGTATTTGACTGGAGCATTAGTATTGGGATTGCTGTACTTTCTGTGCTGCCTCGTCCTCTTTCTTGGTGTGAAGGAACAGTTGGCCCCTCTGAGTAAACTGGACAGCGTAAATGTCCCCTATCTAACTGGTATAAAGTTGATGGTGGGACACACTCCATATGTGCGGCTTGTATTTGGCTTCCTGTTTGCTTCACTAGCCTTCCAGaTGGCTCAAGGGAATTTCGCCCTCTTCTGTACTCACGCAGCGAATATGGGAGCATATTTCCAACATCTTGTTCTCATATTACTGACATCGGCTACAATATCCATCCCAATGTGGCAGACACTACTGGTCAAAAAAGGCAAGAAGACCACCATATTCATCGGCCTATCAATTTATATCCCAGCTCTAACTGTGATATCCCTAGTGAAAAGTAATTTACCTGTCTTCATTATTATGTCCATGGTAGCTGGTGCAAGTCTGGCAGCCCTCTATCTACTCCCTTGgtCAATGTTGCCAGATGTAGTGGATGACTTTAAAGTTAAGAACCCATCATGCCATGATCTAGAACCATTGTTCTACTCCTGCTACGTTTTCTTCAACAAATTCGGAGGAGGCATGTCTGTTGGAGTCTCTACTTTGGTTTTACATTTTGTAGGATACAAGCCTGGTGCTTGTAAACACAATCCAGAGGTCATACACTCTCTGAAGGTGCTTTTCGCTCCTGTGCCAATCTGCCTGCTGCTCATCAGCTTGGTGATGTTTTACTTCTACCCCATCAACGAAGAACAGCGACAGAAAATCCAAGAAGCATTAAGAAAAGCAGgGACAGAGACTGGCTTgaaaggagaagaagaactaAGCCTATGAAGTAATGAGTGGCTTTcactacttttgtaacactgcTGAAATGTTGATCATGAACATGGCCTGTTTTAATCTCGGtgtaaaggcttttttttattgtgcattgtgAATATTTTTCAGTCCTGAGGACACCAACATTAGTTAGGACTCTCACTAAACATACACGCTTCTTTCAGGTCAGGGAGATCTTTATTGGGCTGAATCTCTGCTAAAGAGATGAATAAAAGAGACATTGAAAACGTGCATTGCTATGGGGCCCTCAGGACTAGAATTGAGAGATATTAGTGTACTTAAAGATgcagtgtgtaatttctgtacCATACTCAGCCAAACAGATAATCCTGCCTCAAACCCATATTAAGCTAATGTTGCcatgtaaaatgtgtttatatcaaCCAGTGAATAAAATGGCTTACTAATAAA

Function

NR:

description
PREDICTED: sodium-dependent lysophosphatidylcholine symporter 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224763.1 True 2061 mRNA 0.44 15 10679005 10686715

Neighbor

gene id symbol gene type direction distance location
LOC122328766 sdcbp2,LOC107657068,LOC107672005 coding downstream 4908 10662263 ~ 10674097 (-)
LOC122328736 LOC107672006,LOC107603149,LOC107707753,LOC107657067 coding downstream 96575 10568565 ~ 10582430 (-)
LOC122328446 LOC107707743,LOC107671949,LOC107657006,LOC107603135,LOC107559475 coding downstream 153633 10522098 ~ 10525372 (-)
LOC122328445 zgc:173570,LOC107657062,LOC107559474,LOC107747974 coding downstream 157933 10516716 ~ 10521072 (-)
LOC122329230 dnajc11a,LOC107708818,LOC107701714,LOC107756372,LOC107586512,LOC107656549,LOC108433830 coding downstream 222087 10449485 ~ 10456918 (-)
LOC122328796 LOC107747975,LOC107657065,LOC107672050,LOC570014,LOC107559461,LOC107747988,LOC107603112 coding upstream 2949 10689664 ~ 10694950 (-)
cdc42l2 LOC107603155,LOC107707751,LOC107672009 coding upstream 19268 10705983 ~ 10709169 (-)
dnmt3bb.2 LOC107707749,LOC107747973,LOC107559473,LOC107657061,LOC107603113 coding upstream 22631 10709346 ~ 10727569 (-)
dnmt3bb.1 dnmt3bb.1,LOC107672053,LOC107657059,LOC107747976,LOC107563667,LOC107603157,LOC108276083 coding upstream 43346 10730061 ~ 10765008 (-)
ppdpfb ppdpfb,ppdpf,LOC107719911,LOC107560892,LOC107657053,LOC107747982,LOC107563664 coding upstream 213111 10899826 ~ 10901786 (-)
G156459 NA non-coding downstream 3426 10667957 ~ 10675579 (-)
G156452 NA non-coding downstream 136118 10540899 ~ 10542887 (-)
G156364 NA non-coding downstream 290390 10386954 ~ 10388615 (-)
G156341 NA non-coding downstream 327124 10348141 ~ 10351881 (-)
LOC122328389 NA non-coding downstream 384962 10291465 ~ 10294043 (-)
G156468 NA non-coding upstream 9737 10696452 ~ 10696677 (-)
G156469 NA non-coding upstream 11882 10698597 ~ 10700224 (-)
G156471 NA non-coding upstream 15881 10702596 ~ 10702821 (-)
G156478 NA non-coding upstream 41249 10727964 ~ 10728248 (-)
LOC122329022 NA non-coding upstream 193876 10880591 ~ 10882652 (-)
LOC122328798 fkbp1ab,fkbp1a,LOC107707744,LOC107657066,LOC107747971,LOC108435222,LOC107559476,LOC100705189,LOC105013763,LOC101476936 other downstream 855 10675680 ~ 10678150 (-)
ankrd52a ankrd52a,ankrd52,LOC107594018,LOC107756410,LOC107549041,LOC108432261,LOC107671831,LOC107723718 other downstream 293038 10218473 ~ 10385967 (-)
LOC122328779 taf8,LOC107723763,LOC107756368,LOC107549030,LOC107671856,LOC107594013,LOC107701755 other downstream 311636 10363905 ~ 10367369 (-)
LOC122329224 NA other downstream 319219 10355941 ~ 10359786 (-)
zgc:153284 LOC107701733,LOC107571300,LOC107756391,LOC107549061,LOC107708783 other downstream 845323 9831809 ~ 9833682 (-)
G156746 NA other upstream 414029 11100744 ~ 11105223 (-)
LOC122328546 rpl10 other upstream 1054685 11741400 ~ 11746620 (-)
LOC122329329 NA other upstream 1058547 11745262 ~ 11745395 (-)
atp2b3b atp2b3b,atp2b3,LOC107737604,LOC107712727,LOC107672007,LOC107593407 other upstream 1076994 11763709 ~ 11857968 (-)
si:dkey-93l1.9 si:dkey-93l1.9,LOC107699586,LOC107593449,LOC107671978,LOC107699561,LOC107576394,LOC107737609 other upstream 1113207 11799922 ~ 11801632 (-)

Expression


Co-expression Network