krt18a.1 (krt18,LOC107727028,LOC107681396,LOC107551541,LOC107666358,LOC107705701,LOC107568050)


Basic Information

Item Value
gene id krt18a.1
gene name krt18,LOC107727028,LOC107681396,LOC107551541,LOC107666358,LOC107705701,LOC107568050
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 6454153 ~ 6457919 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224781.1
AACCGCACTCTAGACATGGAGgaatgtgattggctgaaggGAGGGGCTTTTGGAGGCGGGACTTGTAGGAGCAGTTTGTTCATAAAGCCTGAGAGTGTCCCTCATGCCCTGTGCACTCTTCTGACTGTGTTACTGAGCTCTACCTCTCTCCAGTCCTTCATCTGTTCATTCACTTCAGCGACCATGAGTTTGAGAACAAGCTACAGTGTGCGATCCTCCACCTCCCAGGTGCCGGTGTCCCAGATGTCCCAGATGTCCATCAAGCGTACCACCAACGTGCCGACTTACCGGGCTGCGAGCATCTACGCTGGCGCCGGAGGTCAAGGAACCCGAATCTCCACTGCCTCCTACTCAGGTGTCCGCAGTGGAATTGGACTCCCCTCAATGTCCAGCTCCATCCAAGTGAGTGCCACTGGAGCCACAGGTGAGATCATGGGCAACGAGAAGATGGCCATGCAGAACTTGAATGACCGTCTGGCCTCCTACCTGGACAAAGTGAGGACCCTGGAGCAGGCCAACAGCAAGCTGGAGCTGAAGATCCGCGAGGCCCTGGAGAAGAGAGGTCCTGATGTGCACGACTACAGCCGCTTCCAGCCCATCATTGATGATCTGCGCAAGAAGATCTTTGATGCCACCACAAATAATGCCCGTCTAGTGCTTCAGATTGATAACGCCCGTCTGGCAGCTGATGACTTCAGAGTCAAGTATGAATCTGAGCTGTCCATCCGCCAAGGCGTGGAGGCTGACATTGCCGGCCTGAGAAAGGTCATTGATGACACCAACCTGAACCGCATGAATCTTGAAAGCGAGATTGAGGCCCTCAAGGAAGAGCTCATCTTCCTTAAGAAGAACCATGACAATGAGGTAATGGAGCTTCGTAACCAGATCTCCCAGTCAGGAGTGCAGGTGGATGTTGATGCTCCTAAAGGACAGGATCTGGCCCAGATCATGGAGGAGATTAGAGCTAAGTACGAGAAAATGGCCCTGAAGAACCAGGAGGAGCTGAAGGCCTGGCATGAATCTCAGATCTCAGAGATTCAGGTACAAgtcacacagaacacagagGCCCTCCAGGGTGCACGTACAGAAGTCAACGATCTTCGCAGACAAATTCAGACACTAGAGATTGAGCTGGAGTCACAGAAAAACCTGaaaGGATCACTGGAGGCCACTCTGCGGGACACAGAAATGAGATACAACATGGAGATCGAGAGTCTTAATGCCATTCTCCTGCAACTGGAGGCTGAGCTCACACAACTTCGTAACAGCATCCAGCAACAGACACAGGAGTACGAGGCTCTGCTGAACATCAAGATGAAGCTGGAGGCAGAAATTGCCACCTACAGGAGACTTCTGGATGGCGGAGACTtcaaGCTCCAGGATGCTCTTGAAGAGCAAAAGAAGGTGAAAGTGATGACTGTCACGCAAACGCTGGTGGACGGGAAGGTGGTGTCTTCAAGCACAGAAACCAAGGAGAGGAAACTTTGAACATCATATTTGAGATCAACCTCCACAACACATCAGAAAAACCTCATGGGCCAATGATAAAATGATCTAAAGACATGCTGGACTTAACACTTTCGATATTTATTTAGTCCAAAGTGCCTTATTGTAAGTGTCTCAGAGCATATATGCAATGAGTTTTAACTAGCACATTTCAACACTAACTTAAAAATTGTAacaaaattttaacattttaatgactaCAACCAAAAAATCTAAAGGTCAAAACACTATTGAagctttatatttaatacattttgtaatgacAATGATTGTTTATGATCATCAGTTGtcccattttgtttttatgttgtgttgttGTGATCATGTCTTTTCCTTTCAAATAAAAGACACCTTTATCAAA

Function

symbol description
krt18 Enables scaffold protein binding activity. Involved in Golgi to plasma membrane CFTR protein transport; intermediate filament cytoskeleton organization; and negative regulation of apoptotic process. Located in centriolar satellite; cytosol; and keratin filament. Implicated in liver cirrhosis. Biomarker of liver disease (multiple); non-alcoholic fatty liver disease (multiple); and primary sclerosing cholangitis.

NR:

description
PREDICTED: keratin, type I cytoskeletal 18-like

GO:

id name namespace
GO:0005882 intermediate filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K07604 KRT1; type I keratin, acidic

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224781.1 True 1867 mRNA 0.48 7 6454153 6457919

Neighbor

gene id symbol gene type direction distance location
krt18a.2 LOC107666613,LOC107568043,LOC107705676 coding downstream 814 6450959 ~ 6453339 (-)
eif4ba LOC107666323 coding downstream 19178 6422212 ~ 6434975 (-)
tns2a tns2,LOC107681375,LOC107727022 coding downstream 39718 6370216 ~ 6414435 (-)
ppp4r2a ppp4r2a,LOC107727015,LOC107681379,LOC107568049,LOC107705710,LOC107666205 coding downstream 132042 6315902 ~ 6322111 (-)
chl1a chl1a,LOC107663069,LOC107569852,LOC107705711,LOC107681408 coding downstream 270994 6136561 ~ 6183159 (-)
zgc:171775 zgc:171775,LOC107705698,LOC107551519,LOC107681372,LOC107666627,LOC107559857,LOC107727002 coding upstream 57892 6515811 ~ 6521844 (-)
slc16a7 slc16a7,LOC107559865,LOC107705697,LOC107666398,LOC108429289 coding upstream 140799 6598718 ~ 6602083 (-)
adrm1 adrm1,LOC107727009,LOC103354471,LOC108276396 coding upstream 250793 6708712 ~ 6713207 (-)
osbpl2b osbpl2,osbpl2b,LOC107727008,LOC107681391,LOC107666451,LOC107705692 coding upstream 255440 6713359 ~ 6721570 (-)
acss2 acss2,LOC107681393,LOC107551550,LOC107666475,LOC107559859 coding upstream 347450 6805369 ~ 6819843 (-)
G155388 NA non-coding downstream 102328 6349007 ~ 6351825 (-)
G155308 NA non-coding downstream 262833 6191097 ~ 6191320 (-)
G155254 NA non-coding downstream 534990 5815311 ~ 5919163 (-)
LOC122329299 NA non-coding downstream 791197 5654018 ~ 5662956 (-)
G155238 NA non-coding downstream 906445 5525041 ~ 5547708 (-)
G155413 NA non-coding upstream 26735 6484654 ~ 6484915 (-)
G155391 krt8,LOC107551542,LOC108411779,LOC107727027,LOC105023875,LOC107681390,LOC107568038,LOC107705700 non-coding upstream 27520 6485439 ~ 6499749 (-)
G155392 LOC107559866,LOC107705699,LOC107666380,LOC108429286 non-coding upstream 51796 6509715 ~ 6514093 (-)
G155435 NA non-coding upstream 154074 6611993 ~ 6612524 (-)
G155443 NA non-coding upstream 166500 6624419 ~ 6625268 (-)
LOC122329188 LOC107709248,LOC107687290,LOC107558915,LOC107671882,LOC107572785,LOC107723742,LOC107701749,LOC107549048,LOC107756350 other downstream 957679 5484212 ~ 5496474 (-)
LOC122329286 nav1b,LOC107666060,LOC107595432,LOC107740254,LOC107696445,LOC107587625 other downstream 974331 5477841 ~ 5479822 (-)
G155227 si:zfos-452g4.1,LOC107724183,LOC107663057,LOC107696954,LOC107551515,LOC107705659,LOC107593949 other downstream 999106 5454417 ~ 5455047 (-)
LOC122329181 LOC107601337,LOC107697001,LOC107723119 other downstream 1619633 4827478 ~ 4834520 (-)
LOC122329268 LOC107707377,LOC107673205,LOC107746501,LOC107697018,LOC107601321,LOC107598138,LOC108443130,LOC103026736,LOC106572423 other downstream 2259155 4173914 ~ 4194998 (-)
G155489 LOC107681366,LOC107727023,LOC107705691 other upstream 272932 6730851 ~ 6731886 (-)
rps21 rps21,LOC107666483,LOC107681394,LOC106572905 other upstream 308689 6766608 ~ 6823032 (-)
ccm2l ccm2l,LOC107666505,LOC107551511 other upstream 400088 6858007 ~ 6867300 (-)
LOC122328436 cables2b,LOC107681405,LOC107705686,LOC107551510,LOC107559848,LOC107726996,LOC107666605 other upstream 506823 6964742 ~ 6981961 (-)
LOC122329304 ccm2l,LOC107666505,LOC107551511 other upstream 536248 6994167 ~ 7003523 (-)

Expression


Co-expression Network