sdf4 (sdf4,LOC107591077,LOC107673072,LOC107716138,LOC107687443,LOC107593920)


Basic Information

Item Value
gene id sdf4
gene name sdf4,LOC107591077,LOC107673072,LOC107716138,LOC107687443,LOC107593920
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 14100397 ~ 14104226 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224788.1
CCTCGTGTCACGCGAGAAGAAGACGCGCGATCTTGACAACGTAGCAATGTTTCTGTCCTGAACGCGTTTCTGGCGTCAGTCTGCGTGAACTCTTGCGGGTATCGGTCTGTCCCGTATGCGTTTGCGTTACCTGAATCCAGGGAGGGAGGACGTGTCGTTCAGGGCCGTAAACCGCTCCGGTGGGCAGCGTTTGGTCTCGAGTGGCGACGTGTCCAGGAACTGCGCGATGAGCTGCACTTAGACAGCAGCTCGAGGTGCTTTCAGTACAGCAGGCCACTGGCTTCTTCATTCATCTGATAGTTTATTTGTGGAAAGGACCGTTCCAACGTACATTGTTCGTGCATCGCTTTGTGACGTTCAAGCAGTAAAGCCATGTCTAACAGGAGAAGACCTCAGCCTGGCCGCTTGTGCGCCTCGACTTTGGCAGTGTTTGCGGTGCTGGCTTTGAATGTTCAGGCCAGGCCAGCAAATATATCCGCGTTAAAAGACAAACACCCCAACAGCAAAGAGGACAATGAGATCCTTCCACCTGACCACCTGAACGGGGTGAAGATGGAAATGGACGGTCACCTCAATAAAGACTTTCATCAGGAGGTGTTTCTGGGGAAGGAGATGGAGGAGTTCGAGGAGGACTCGGAGCCCAGGAGGAACAGGAAGAAACTTATTGAAATCTTCACCAAGGTGGATATTAATAAAGACAGGAGTGTCAGTGCTAAAGAAATGCAGCGCTGGATCATGGAGAAGACGGAAGAACATTTTCAGGAGGCTGTTCGAGAAAACAAGCTCAGTTTTCGTGCCGTGGACCCTGATGGGGACGGACATGTGACTTGGGATGAATACCGTGTGAAGTTTTTGGCCAGTAAAGGTTTCAATGAAAAAGAAGTGGctgagaagataaaaaaaaatgaggaacTGAAAGTGGACGAAGAAACTCAGGAGGTTCTGGAGAGCTTGAAGGACCGCTGGTTCCAGGCAGATAACCCTCCAGCCGACCAGCTGCTAAATGAAGAGGAGTTCCTCTCGTTCCTGCACCCGGAGCACAGCAGAGGCATGCTGAGATACATGGTCAAAGAGATCGTCAGAGATCTCGATCAAGATGGAGATGGAAAGTTGACTCTTGCTGAGTTTATCTCCCTCCCAATGGGAACCGTGGAGAATCAGCAGGCCCAAGACATCGATGATGACTGGGTTCGTGAAAGGAAGAAGGAGTTTGAAGAAGTCATTGACGCTAACCATGATATGATTGTAACCATGGAAGAACTGGAGGAGTATATGGACCCTATGAATGAGTATAATGCTCTGAATGAAGCCAAGCAGATGATCGCTGTGGCAGATGAGAACCAAAACCACAACCTGGAACTAGAGGAGATCCTTAAATACAGCGAGTACTTCACTGGCAGCAAACTCATGGACTATGCCCGTAACGTACATGAGGAGTTCTAAGACAAGTCTTTATGAAAAAGAATAGCATGTATATATCACTAAAGTGTGGCAGGGATGATCTTTGCTTGCTTCCCAGACTTAGATCAACAAGTGCATTCGGACACGTTTGTAAACGTACAGAACCTCGAGCCACAAATCCTTCTGTAATGTTGAAACGCGCAGATATGACATATTAATAAGAGCTAGCCTTCATGTCTTAGATTTCCATTCGAGCCCCATAAAGttccatctaaaaaaaaaaatgttacacgTTGTCACTTTCGTCaggtttttgagttttgatAATTAAGAGAAATGTCTGTATATGAGGAATTGGTGAGGggaaagattattttttttcacatgaaggtggaatttgtttaaaaaaggaaaaaaaaatgtaaataatttattagtttGGAGTGccataatttataaatgttttcactttTTGGGTGGGTTCCTTTTGACAGGGTTTGAGCTTCCTGATGCGTGTTATTTCCAAAGACGACGAGCTAGCAAAATGATTTAGGGTGGTAATTTTGTGAAAACCGTAACATGCAGGACTACACATAGCACTTCTATTTAAGAGCTcatcattaaatgcaaaaatgaaaaagtctaGTTAAGGAATCGTATTAAGTGAGAGTTCATAGGATCATTAATCCGTCCAGATGTGACCTATTTGCACACTGAAGAGTTTTTAACAACCCCATTATGTCATAATTGTATATAgcttgcatattattttattgcttttcagaATTCAGTCCACTCTGTTACCTCGGCAGCCTCCTCTAGTCAGATGTTAGTCAGTATAATCGAGGATCTTTATTTCTTGATGACTTTGAAGTTTATCCATTGACGTCTGTATtgtaaaaagtcattaaaagtGAGTTAATTTAAACATAAGAGAGAAGCTTTGagagaaattatattaataggAACTATAATTTACCCTTTTGAGATTATGACAAATGAAAGGACTGATAcatgtattttctgtatttgagaataaagttttattaaaacacacatttgccTCATGAAATTAGGCCAATGTGTCCTAATGACTGTGTAATAATTCAGCTCTAGGGTTGGTGGTGATCATTTTTGAGCATGCTTCGGTCATAGTTTAAGAGATcgattttattttgctattaattattaatggcTGTCTTTTTggattaatttgttttgttattgaaTTTTTGAATTCTATTGTGTGTTTATTGGATGTTAAAATATGAGCTGCTAACGTGTCCAGAATTATCCTTGTTCATTGCCTgatcatattttacattcatcctgtggaaattaaagtaaaaaaaaaacactga

Function

symbol description
sdf4 Predicted to enable calcium ion binding activity. Acts upstream of or within sprouting angiogenesis. Predicted to be located in Golgi lumen. Predicted to be active in endoplasmic reticulum. Is expressed in several structures, including epidermis; hatching gland; notochord; periderm; and polster. Orthologous to human SDF4 (stromal cell derived factor 4).

NR:

description
PREDICTED: 45 kDa calcium-binding protein

GO:

id name namespace
GO:0005796 Golgi lumen cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K19934 SDF4; calcium-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224788.1 True 2762 mRNA 0.42 7 14100397 14104226

Neighbor

gene id symbol gene type direction distance location
ctdsp2 ctdsp2,LOC107593922,LOC107716136,LOC107673073,LOC107687442 coding downstream 5961 14085586 ~ 14094436 (-)
tmem240a tmem240a,tmem240,LOC108275582,LOC107593924,LOC107687438,LOC107673083,LOC105898995 coding downstream 60319 14031726 ~ 14040078 (-)
LOC122328469 sdhb,LOC107673094,LOC107593926,LOC107591143,LOC103467007 coding downstream 71229 14025634 ~ 14029168 (-)
atp13a2 LOC107737536,LOC107673093,LOC107716130,LOC107687434 coding downstream 74871 14013247 ~ 14025526 (-)
sult1st5 LOC107591081,LOC107673112,LOC107737538 coding downstream 92662 14002436 ~ 14007735 (-)
syt6a syt6a,syt6,LOC107673111,LOC107591076,LOC107593918,LOC108433426,LOC107737664 coding upstream 46297 14150523 ~ 14196687 (-)
avpr2aa avpr2aa,LOC107591070,LOC107737524,LOC107687451,LOC107716149,LOC107673055,LOC108436342 coding upstream 153624 14257850 ~ 14272460 (-)
idh3g idh3g,LOC107737522,LOC107591068,LOC107673097,LOC107716150,LOC107593912,LOC108425561 coding upstream 182735 14286961 ~ 14293566 (-)
lrp1ab lrp1,lrp1ab,LOC107673053,LOC107593902,LOC108425568 coding upstream 324746 14428972 ~ 14524636 (-)
senp1 LOC107673065,LOC107568405,LOC107737512,LOC107716163 coding upstream 450588 14554814 ~ 14563800 (-)
G157863 NA non-coding downstream 24460 14057837 ~ 14075937 (-)
G157826 NA non-coding downstream 274808 13823993 ~ 13825589 (-)
G157813 NA non-coding downstream 327089 13772775 ~ 13773308 (-)
G157799 NA non-coding downstream 353226 13742257 ~ 13747171 (-)
G157765 NA non-coding downstream 664536 13433755 ~ 13435861 (-)
G157874 NA non-coding upstream 37713 14141939 ~ 14142168 (-)
G157875 LOC107673069,LOC107737697,LOC107593917,LOC107591119,LOC107716140,LOC107687444 non-coding upstream 39436 14143662 ~ 14143930 (-)
G157880 NA non-coding upstream 132126 14236352 ~ 14237014 (-)
G157885 NA non-coding upstream 138355 14242581 ~ 14243955 (-)
G157901 NA non-coding upstream 198646 14302872 ~ 14343270 (-)
G157373 LOC107591099,LOC107703059,LOC107737560 other downstream 818070 13280256 ~ 13282327 (-)
G157367 NA other downstream 882989 13141078 ~ 13217408 (-)
G156985 NA other downstream 2175747 11922844 ~ 11924650 (-)
atp2b3b atp2b3b,atp2b3,LOC107737604,LOC107712727,LOC107672007,LOC107593407 other downstream 2242429 11763709 ~ 11857968 (-)
zbtb48 LOC107673103,LOC107716144,LOC107591072,LOC107687447,LOC107737528 other upstream 118583 14222809 ~ 14233051 (-)
G157909 LOC107673054,LOC107737519,LOC107716153,LOC107591065 other upstream 222740 14326966 ~ 14330784 (-)
fitm2 LOC107673062,LOC107737511,LOC107568407,LOC107564660,LOC107716178,LOC107668335 other upstream 466121 14570347 ~ 14589622 (-)
LOC122328902 LOC107737500,LOC107673074,LOC107695835,LOC107564653,LOC108275744 other upstream 580664 14684890 ~ 15301682 (-)
LOC122328913 zgc:162898,c4h15orf61,LOC107738714,LOC107686305,LOC107583911,LOC107718314,LOC107596966,LOC107672207 other upstream 942926 15047152 ~ 15048344 (-)

Expression


Co-expression Network