ctdsp2 (ctdsp2,LOC107593922,LOC107716136,LOC107673073,LOC107687442)


Basic Information

Item Value
gene id ctdsp2
gene name ctdsp2,LOC107593922,LOC107716136,LOC107673073,LOC107687442
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 14085586 ~ 14094436 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224794.1
ACCAAGACTAGAGGGGGCTATGGATAAATATACACGCGATAGAGTAAACCGAGACGCGAAGCCTAGAAAATAGCAgataagagaaaacaaaacaaagtgtcATGCCCCTCCCATGTGGAAGAGAATAGAAGGcgggaataaataaatatcaaaatattttgtcGCCGTAGGTTTGAGATATTTTTGCGCGAACggaaattattcatttcaagCGTCGCTAGCTTTTAATGCCACTAAATGCGGACCGACTGTTCGTCGCTGGAAAAGGTCGGTTGGACGTTGAGGGCTGCGCGTTTGTTAGATGGAAAGTTCTATCATCACTCAAGTGCAGAGAGAGGATTCTCGCTTGTCTTCGAAAACAGACCAGGTGAATAAAAGCTCGCCTCAGAAACCCGGGAGCAGGAATATCTTCAAAAAGCTCATCTGTTGCCTTCGAGCTCAAGATGCCCAACTGCCAACATCACCTACCCATGATGCCTTGCTAGCGCCTGAGGACAATGGGACCATTGCCAAAATACCCGGAGAGTGTCTACTGCCAGCAGTGACCTCTCAGGACCAGGGGAAGATCTGTGTGGTCATAGATCTGGACGAAACACTGGTTCATAGCTCCTTTAAGCCAATAAGCAATGCAGATTTCATTGTGCCTGTGGAGATTGAGGGGACCACACACCAGGTGTATGTGTTGAAGAGGCCATACGTGGATGAGTTTCTCCAGAGGATGGGAGAACTGTTTGAATGTGTTCTGTTCACTGCCAGCCTTGCTAAGTATGCAGACCCCGTGACTGACCTGCTGGATCAATGTGGCGTGTTTCGCGCACGCCTCTTCCGTGAATCTTGCGTCTTCTATCAAGGCTGCTATGTTAAAGACCTGAGTCGCCTCGGCCGTGAGCTCCACAAAACCCTGATCCTGGACAACTCCCCCGCCTCCTACATCTTCCACCCCGAGAATGCTGTTCCTGTATTGTCCTGGTTTGATGATTCAGAGGACACCGAGCTGCTTCACCTCATCCCAGTATTTGAAGAGTTAAGTCAGGCTGACGATGTCTACAGCAGACTCGAACAACTCAGGGGTCCGTAATCCCTACACCACCAGACCAGGGCCAACCTCCATGTTGTGTAGCACTGACTGCCAATCACACGCGAGCAGCTCATATGACAGGAGACTCCGCCTTCTGACCTGAAAACAAACACGAAAGCTCATAATTCTGCTCAGCACGAAGTATATGCGGTTCTGCTACAAGGTTTGAGGACCTCAAACAGTTAGAACAGAAGCCAGCTTTGTCCTAGTCATTGAGCTTGAATTTTGCAATAACAATTTACAGATtttatattcctttttttacttgttttgttataagcatttttttttacatttaaagtgacatTATTTGGGAGATTAAAACCGTTCATAGGGCAGGTTATCCGTAATCTGCAATTACGTTATACAGCTCAGCAAGTAacataaagcacaataaactttCAGGCCAGTCTTTCTATGCAAAGTCCTACCTGAACTCAACCTCACATTTTTAATCTTCAACATTCATATTCATACTTTAAAGAAAGActagtgtttttaatgtattccaGATTCAGGCGAAAACTGCCGCAGGAATACACAGTCTTATCCAACATGCTATGCATACGTTTTccataaatgcaaatgtgacaCCAAGCACCCATTCGTCCTTGTTTCTGATCAGTCTTATTACTTTACAAAAGGCCTAGTTTATAaactgcaggttttttttttatatatatactgtcgCTGAGGTGCATTATCATGGCATTACTTAAAAAAGTACctgtttttaacactgttttATGTGAATTACAACTACATGCTTATCTCGACACTTCCTGTATTCAATCTTAAAGTGGCCTTATGTCTGCTTCAAGTGTACATGATGGGGTTTTATGATACGCGAGGAGCAGAATTAACACCACAGAATGAACCAAAGAGATTTATCTTGTTCGGTaattgtctttctctctgctgtatTTATGCAGACAATTACTAGTACTGTCATCTATGTGTATATTTGGTTGAACTTGAACTTGAATTGTCTTTGTATGATACTGTCTGTTTGACGCAGACCACACGCTCCACCTCTGTATTTCatcttatattatttaaacacgatcatgtttttatattataagttgtttttactgtagcacaaatattcaaaatggccatgttttataaaaaaagggcAGATTATTgtgttttggtttaaaaaaagatgccCTGATAAGGTCGGTGTTGCCACGTTTTTGACTTTTGTATTTGCAACAATAaattttttctgtggaacatta

Function

symbol description
ctdsp2 Predicted to enable RNA polymerase II CTD heptapeptide repeat phosphatase activity. Acts upstream of or within neuron differentiation. Is expressed in brain; eye; fin; integument; and muscle. Orthologous to human CTDSP2 (CTD small phosphatase 2).

NR:

description
PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 2 isoform X1

GO:

id name namespace
GO:0030182 neuron differentiation biological_process
GO:0016791 phosphatase activity molecular_function

KEGG:

id description
K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224794.1 True 2322 mRNA 0.42 7 14085586 14094436

Neighbor

gene id symbol gene type direction distance location
tmem240a tmem240a,tmem240,LOC108275582,LOC107593924,LOC107687438,LOC107673083,LOC105898995 coding downstream 45508 14031726 ~ 14040078 (-)
LOC122328469 sdhb,LOC107673094,LOC107593926,LOC107591143,LOC103467007 coding downstream 56418 14025634 ~ 14029168 (-)
atp13a2 LOC107737536,LOC107673093,LOC107716130,LOC107687434 coding downstream 60060 14013247 ~ 14025526 (-)
sult1st5 LOC107591081,LOC107673112,LOC107737538 coding downstream 77851 14002436 ~ 14007735 (-)
tmem82 tmem82,LOC107737537,LOC107593928,LOC107673057,LOC107716128,LOC107580573,LOC107687464 coding downstream 82901 13999885 ~ 14002685 (-)
sdf4 sdf4,LOC107591077,LOC107673072,LOC107716138,LOC107687443,LOC107593920 coding upstream 5961 14100397 ~ 14104226 (-)
syt6a syt6a,syt6,LOC107673111,LOC107591076,LOC107593918,LOC108433426,LOC107737664 coding upstream 56087 14150523 ~ 14196687 (-)
avpr2aa avpr2aa,LOC107591070,LOC107737524,LOC107687451,LOC107716149,LOC107673055,LOC108436342 coding upstream 163414 14257850 ~ 14272460 (-)
idh3g idh3g,LOC107737522,LOC107591068,LOC107673097,LOC107716150,LOC107593912,LOC108425561 coding upstream 192525 14286961 ~ 14293566 (-)
lrp1ab lrp1,lrp1ab,LOC107673053,LOC107593902,LOC108425568 coding upstream 334536 14428972 ~ 14524636 (-)
G157863 NA non-coding downstream 9649 14057837 ~ 14075937 (-)
G157826 NA non-coding downstream 259997 13823993 ~ 13825589 (-)
G157813 NA non-coding downstream 312278 13772775 ~ 13773308 (-)
G157799 NA non-coding downstream 338415 13742257 ~ 13747171 (-)
G157765 NA non-coding downstream 649725 13433755 ~ 13435861 (-)
G157874 NA non-coding upstream 47503 14141939 ~ 14142168 (-)
G157875 LOC107673069,LOC107737697,LOC107593917,LOC107591119,LOC107716140,LOC107687444 non-coding upstream 49226 14143662 ~ 14143930 (-)
G157880 NA non-coding upstream 141916 14236352 ~ 14237014 (-)
G157885 NA non-coding upstream 148145 14242581 ~ 14243955 (-)
G157901 NA non-coding upstream 208436 14302872 ~ 14343270 (-)
G157373 LOC107591099,LOC107703059,LOC107737560 other downstream 803259 13280256 ~ 13282327 (-)
G157367 NA other downstream 868178 13141078 ~ 13217408 (-)
G156985 NA other downstream 2160936 11922844 ~ 11924650 (-)
atp2b3b atp2b3b,atp2b3,LOC107737604,LOC107712727,LOC107672007,LOC107593407 other downstream 2227618 11763709 ~ 11857968 (-)
zbtb48 LOC107673103,LOC107716144,LOC107591072,LOC107687447,LOC107737528 other upstream 128373 14222809 ~ 14233051 (-)
G157909 LOC107673054,LOC107737519,LOC107716153,LOC107591065 other upstream 232530 14326966 ~ 14330784 (-)
fitm2 LOC107673062,LOC107737511,LOC107568407,LOC107564660,LOC107716178,LOC107668335 other upstream 475911 14570347 ~ 14589622 (-)
LOC122328902 LOC107737500,LOC107673074,LOC107695835,LOC107564653,LOC108275744 other upstream 590454 14684890 ~ 15301682 (-)
LOC122328913 zgc:162898,c4h15orf61,LOC107738714,LOC107686305,LOC107583911,LOC107718314,LOC107596966,LOC107672207 other upstream 952716 15047152 ~ 15048344 (-)

Expression


Co-expression Network