acvrl1 (acvrl1,LOC107695804,LOC107708857,LOC107570535,LOC107681938)


Basic Information

Item Value
gene id acvrl1
gene name acvrl1,LOC107695804,LOC107708857,LOC107570535,LOC107681938
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 16102408 ~ 16115284 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224814.1
TGAGAGCACATTCCAAGTGAACCCCGGCTTAGACAATGAGGGGTGGGacaaaactgtatattttaaaatctgtaatctAACCCCTAAATCAAGAACATTGCTCAACGTTTGCTTTACACTTATCGAGATGGACTCGTCGGGAGTCGATCGGGGAATGTTTATTTCCAAGCGGAAGAAGTCTGTTTCGTCTTCGAGAAGCGGTTTCTTGTTTTCGGTTTATCAGCTCGAGATTTGACTGGAGATATATGCCACGACTCGACGTGCTCTGCGTTACGGCGATCTACGCGACATTTCGCTCGGGGAAATGGGGCAGATCGGACtgtaagtgaatgaaaacttAACCGTGGAGAGTTTAACTGAAGAGTTTACGCCGAGAGTACCAGGATGTGGAAAAAGTTAAGGATCCAGCACATCTGGATATGAGTTGCGCCGCTGATTTCCCTACAGTCGCCGTTAGAAGATAATGGTTTTATGCTTTGAGTAATGAGAGACGAGTTTCATAAACTGATGCAGTTTGATCAACTTCATTCGTGAGTGAGCGCAAGACGAAAATCAGACATGAAGGCTTCTGAGATGCTCGCTGTACTGTTTGTTTTGGTGCATTCGAGGAGTTACACAACTCTCGCAGATCACGTTCAGATGACAGACCCTCCCCCAGAGAATAATGAAGGCGAGGAGGGCCATTTACAGTGCAGCTGTGAGAACACAGTTTGTGAAAACAACACCTGCAGGGGCCGTATCTGTTTCTACAGTTCAGTCCATGAGCGGGTAGTCAGGGGCTGTTTTCCCACCCGCGAGCAGTGTCATGTGCCCAAAGTACCTGAAGTGTATACCGAGTGCTGCGTCACACACTTCTGTAATGCAAACCTCACTATGCCTGAAAAAACAGTGGAAAAGCCCATCAGAGTGATTCTGCTGGTGGGACTGCCGTTGCTGGTGCTGCTGGTGTTGTCGATGGCAGGCTGTGGGCTCGTGTTGTGGCTGCGTACGAGGGGACAGCACCACCAGCTGGTGGAGCACGACCCTTCCATGCTCAAAGTCCCCAGTGGAGGGGACCTAACATATGGGGACATATTTGATGAGTTTTGTACGTCGGGCAGTGGGACCGGCCTGCCTTATCTGGTGCAGAGGACCATGGCTCGACAGATCTCTCTGGTTGAGTGTGTTGGTAAAGGGCGTTATGGAGAAGTATGGAGAGGTACCTGGATGGGAGAGAGTGTGGCTGTCAAGATTTTCTCCTCTCGTGATGAACAATCCTGGTTTAGAGAGACTGAAATCTATAACACGGTCCAACTAAGGCATGAAAACATCTTGGGCTTCATAGCATCGGACATGACATCTAAAAACTCCAGCACTCAGCTGTGGCTCGTCACGCACTTCCATGAGTTGGGCTCCCTCTACGACTTCCTGCAGAACAGCAAGCTGGACCCCGAGGGCTGCCTGCGCATGTGCCTGTCCATCGCCAGCGGCCTTGTGCACCTCCACACCGAGATCTTCAGTACGCAGGGCAAACCGGCCATTGCACACCGAGACCTGAAGAGCCGCAACATTCTGGTGAAGAGAAATGGACAGTGCTGCATTGCAGACCTCGGCTTGGCTGTCATTCACTCTCAGTCTAATGATTATCTGGATGTGGGCAACAACCCGAGGGTGGGCACCAAGCGTTACATGGCACCAGAGGTTTTGGACGAAAGTATTCGCGTTGACGTTTTTGAGTCTTATAAACAAACTGACATCTGGGCCCTGGGACTCGTCTTGTGGGAGATAACTCGTCGAACTATTGTAAACGGGATTGTGGAGGAGTACAGACCGCCGTTCTTTGACGTGGTGCCCTCTGACCCCAGTTTCGAGGAGATGAAGAAAGTGGTGTGTGTGGACCAACACAGGCCCAGTCTCCACAATCGACTACATTCTCATCCGATCCTGTCTGCAATTGCGAAGATTATGAAAGAGTGCTGGTTCCAAAGTTCTTCAGCTCGACTCACTGCTCTGCGTGTGAGAAAGACCCTCTCCAAACTGGACCAGGACCATGACTACGACATCGACAAGCTCAAACTGGACCTCTAAAATAAACCTCCTTTCGTGCATAGCCAAGGAAGTTGAATTCTAATGGACCCACATGACATATTTATCCATCTGAGTACTTTTAGACTCTTTTAAGCCTTTCAAGCTTCTTGTTTAAAGGCTCCACTGAACATGGCTTATCTTATCATGACATTAGTTCACTGTGGGAAGTCTCTCCTCAAATATATACCCACATGAATGCTTTTCCAGGACCGGCATATTACAACAAGGTGACTCATTTGTTACTGAAATCAAAATAAGGCTGATGAATCCACCAAATTCTTTTTAGTATAGTGAGAGTGAGAAGGGTTTTTTTCAGTCAGGATGTGGGTCATTTTGGACTTCCTAACTGCTGTGTTTCCTGAAATTCTTAACTTCCTAAACATGACTGTAACCTAGAAAGGTTGGCAGATGCTTTAGACTGTTGCACTTATTTTTTGGAAGCTGTTTTTTGATTTCATGAAAGACTGGACCATCTTTTTAAGAACAAGAAATGCATCGCAACTTGCACcaagtaaaatataaactgttaaatatttttacacaatcaaaattacagtttcaaTACTCTTGCTGTgctatatcatttttataatgtacaatataattgctttttttaaaaataatcataaaaaaaattgtatacaagttcttttgcacaaaatattgttattttcacttcaaataatagtatttaagtattaataaaacttCAGGATACTGAAGCAGA

Function

symbol description
acvrl1 Predicted to enable SMAD binding activity and transforming growth factor beta receptor activity, type I. Acts upstream of or within several processes, including artery morphogenesis; blood vessel endothelial cell migration; and determination of ventral identity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of BMP receptor complex. Predicted to be active in plasma membrane. Is expressed in cardiovascular system and liver. Used to study arteriovenous malformation. Human ortholog(s) of this gene implicated in hereditary hemorrhagic telangiectasia and pulmonary hypertension. Orthologous to human ACVRL1 (activin A receptor like type 1).

NR:

description
serine/threonine-protein kinase receptor R3-like isoform X1

GO:

id name namespace
GO:0048514 blood vessel morphogenesis biological_process
GO:0048264 determination of ventral identity biological_process
GO:0006468 protein phosphorylation biological_process
GO:0034405 response to fluid shear stress biological_process
GO:0060840 artery development biological_process
GO:0016020 membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0004675 transmembrane receptor protein serine/threonine kinase activity molecular_function

KEGG:

id description
K13594 ACVRL1, ALK1; activin receptor-like kinase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224814.1 True 2794 mRNA 0.46 11 16102408 16115284

Neighbor

gene id symbol gene type direction distance location
acvr1ba LOC107708859,LOC107570552,LOC107681940,LOC107716207,LOC107695803 coding downstream 2649 16083732 ~ 16099759 (-)
dnajc22 dnajc22,LOC107708801,LOC107571715,LOC107716089,LOC107563648,LOC107695753 coding downstream 79038 16021317 ~ 16023370 (-)
ikzf4 si:dkey-166n8.9,ikzf4,LOC107681936,LOC107695809,LOC107570458,LOC107563647 coding downstream 82761 16009720 ~ 16019647 (-)
wnt10b wnt10b,LOC107570475,LOC107745470,LOC107681943,LOC107716203,LOC107695810,LOC107563634 coding downstream 110843 15984905 ~ 15991565 (-)
arf3a arf3,ARF3,arf3a,LOC106921537,LOC102781726,LOC106954774,LOC104956878 coding downstream 119239 15978616 ~ 15983169 (-)
ankrd33aa ankrd33aa,LOC107708858,LOC107570559,LOC107563641,LOC107716213,LOC107695800,LOC108433401 coding upstream 3108 16118392 ~ 16126411 (-)
sp5l sp5l,LOC107708798,LOC107681947,LOC107695752,LOC107586542,LOC107571725,LOC108276147,LOC108432429 coding upstream 74147 16189431 ~ 16192678 (-)
b4galnt1a b4galnt1a,LOC107708855,LOC107681939,LOC107586541,LOC107716216,LOC107570598,LOC107695798 coding upstream 107525 16222809 ~ 16234574 (-)
znf385a LOC107695795,LOC107716219,LOC107586538,LOC107570601,LOC107708851,LOC107681944 coding upstream 143791 16259075 ~ 16331672 (-)
neurod4 LOC107716220,LOC107695793,LOC107586565,LOC107683357,LOC107571777,LOC107708795 coding upstream 226162 16341446 ~ 16344687 (-)
G158282 NA non-coding downstream 194 16101625 ~ 16102214 (-)
G158227 NA non-coding downstream 136645 15964753 ~ 15965763 (-)
G158208 NA non-coding downstream 289481 15812281 ~ 15812927 (-)
G158198 NA non-coding downstream 313077 15728154 ~ 15789331 (-)
G158188 NA non-coding downstream 420536 15680886 ~ 15681872 (-)
G158284 NA non-coding upstream 2597 16117881 ~ 16118214 (-)
G158333 NA non-coding upstream 131732 16247016 ~ 16247293 (-)
G158353 NA non-coding upstream 301641 16416925 ~ 16439280 (-)
G158377 NA non-coding upstream 308680 16423964 ~ 16424362 (-)
G158383 NA non-coding upstream 317677 16432961 ~ 16433629 (-)
G158231 NA other downstream 93493 16008106 ~ 16008915 (-)
LOC122329227 NA other downstream 385158 15621942 ~ 15717250 (-)
magi3a magi3,magi3a,LOC107695739,LOC107564661 other downstream 628018 15347417 ~ 15474390 (-)
LOC122328902 LOC107737500,LOC107673074,LOC107695835,LOC107564653,LOC108275744 other downstream 800726 14684890 ~ 15301682 (-)
G158288 LOC107708856,LOC107570569,LOC107716212,LOC107681953,LOC107695729 other upstream 28549 16143833 ~ 16169834 (-)
tac3a LOC107708854,LOC107571761,LOC107681951,LOC107586540,LOC107695797 other upstream 125526 16240810 ~ 16243395 (-)
G158336 LOC107716221,LOC107570608,LOC107586536,LOC106567035 other upstream 240085 16355369 ~ 16358705 (-)
slc48a1a slc48a1a,LOC107671836,LOC107598487,LOC107594008,LOC107756371,LOC107697869,LOC107757747 other upstream 1061341 17176625 ~ 17184385 (-)
G158609 NA other upstream 1223983 17339267 ~ 17343385 (-)

Expression


Co-expression Network