LOC122328851 (LOC107687290,LOC107709248,LOC107558915)


Basic Information

Item Value
gene id LOC122328851
gene name LOC107687290,LOC107709248,LOC107558915
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 2965600 ~ 2976846 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224888.1
TTACTGTAAGAGTCTCAGTCTCAGTcgagctggtgtgtgtgtgtgtgtgtgtgtgtgatgatctGCTTCAGCATGAGGACTCTTTCTGTCGGCTTTCTCCTGCTGCTGTCTGTCTGGAGCGTGTATGTACGGGCTGACAGCAGGGGGATACGACAGAAGCGCGCATGGATCATTGATTCGTTTAGTATTGAGGAAGAATATTCTGGTACGTTTCCATATAAGCTAGGCAAGGTTGAGCTCGATAGGTCTTATTTAGTACATTTGGAACTACATGGTCAGGGTATGGATAAAGATCCAAAGGGTGTTCTCCGCATTACAGATACGGGTGAAATTTTTGTACTTAGAAAGGTGGACTATGAAACGGATATTAACATTCTCCATCTGAAATTTGAAGCAAGAAATCAATCCAACTATGAAGTGGTTACAAAACTTGGGCTTCAGATTCAAATATTGGACATAAATGACCACGCACCAGAATTTCAACCATCATCGGTCTATGAAGTGTCTGTTGATGAGTCACTTGCTCAAGgTAAAGAAATAACAACAGTAAAGGCAGTTGATCAGGATGATTCAAGTACAGACAACGGAACATTTGTTTTCACAATCAAGTCTGTCACACCAAAGACAGATAATGTTGAATTTTATATTCAGCAGCAAAAAGAATCCGggacaatttattttaagggttGCTTGGACTATGAGAAAGCTCAGAAATATACGATCCTTGTTGAAGCAAAGGACAAAGGGGAAAAGATACAGCTCTCAAGTACAAGTACACTGATAATCAATATTTCAGACAATAACAACAATCTTCCAGAGTTCTCTGGCAAAACAgGACCAGGGAAGGTCAAGGAGAGAGAAACTGGGGTTGAAGTTCTGCGACTGCAGGTAACAGACAAAGACGTCCGTGGTTCGAAAGCTTGGAAAGCCAAATACACAATCCATgaagataaaaaagaaatattcaaaatagaaacGGACCCCGTTACAAACGAAGGGATTTTAACAGTCATTAAGGTAAGAAGATGGTTGATACTTTATTCTCAAACCGACTACGAGGAGCAAACAAATCACAATCTGTCCATCAGTGTGCAGAATGAAATTCCTTATTTTTCCtgcaagattaaaaataaagtaccaAATGCCATGTGGGTGCTCGACAAAATACCCCAAAGCTCTGAGATGAGTGCTGGAAACCTCTATAACCGTATTCCAGTGACCATTTACGTAGAAGATGTCAATGACCCTCCAGTGTTTATACCCCCTGTGAAACACGTCGTGGTAATGGAGAACATTGATGTAGGAACAAGTCTTACAACCTTCACCGCTAAAGACATGGATGGAAGCCACGTAAACACATTTAAATTTGTTAAAGGTGAAGATATTGATAAATGGATAACTATTGATGCAAAGACTGGAAAAGTATCCACAATTAAAATTCTGGACAGAGAGTCACCATTTGTGAAAAACGCCACCTATACGGCAACCCTGTATGCTGTGGATGAAGGTGTCCCTCCGCTGACAGGCACTGGAACTCTAGTCATTCACCTGAACGATCAAAATGATAACGTACCaatattggaaaaaaatgtagtcACTATTTGTATAGATAAAGAGCCCACACTGGTCAACATCACAGCAGTAGACCTGGACTTTCCTCCATATGGATCACCTTTCTACTATGAGCTTTTAGGAGATGTCCTGGACAAATGGATGATTGAACCAGTGTACGGCACAACAGTGAGTCTcgttaaagaaaaacatgtttattcaGGCCATCACCTCCTCCAGATCAAGATATCAGACCAGCAGGGACTGTACTCCATCCAGAACCTGACGGTCACGGTGTGTGACTGCTCTGTCACTCCTAACTGTCACGTCAGGATGGTCTCGCAGGCTCGGATGGGGCCTGTTGCTGCCTGGATGGTTATTCTTGCGATTCTTATTCTTACAGcagTGTGCTTAATGAGTCTAACAATATCCTGCAAGGcagagaaaataattattatgatgGATGATGGGATCGGTCATCTCATCacaacaaatacagaaaatccAGGAACAGACTGCACGGTGATGTATAAAGGACAGCAGGCTGTTTCACAGACTCCATCATCGCTCTACAACGAGCAGATGTTCAACCGCTCTACCTATAGAaattccacaAGTCGTTCATACAGAAAAAATTTTCAGCAATCAAGCGTCAGATCAAGCGTTAGAAGCAATTATTCCTACAACATCAATGCATCTTACCTCACAGGACTCATCAACCAGaaagtacTTGCTCTCCAAACCCGTGATGAGGAACATGGTATTTACGAACCGCACTGTTACACAGATGAAGGACAGCCTATGGCCAGAGATGAACTGGATGCAATATCCATTTCTGAGGATGACTTTCATCCAGACATGCTTAAAAATCTGGACAGCAGGTTCTGTCAGTTAGCAACAATCTCCAGACCTGACCTGATGAAGAGGTGACGGTTATCTCAGAAAGCGTAGCctaactataaatatttaggacaaaatgctacatttttactACAGTTCTACAGTTGATTTGCTGAGTGTAAAGATCTAAAGAATTAAAAGTTTTAGGTGAACTCAggtttatttgcttttgttctgttgattttgatgtatttttttgtaggCTGATGTGTTCGTGTTGAAtgattttaagacatttaatacaaatataatggTGTTTTAAGTTGCTTATATGCGAGTTtgaagaaaatgtctttttttgacTGCATCCTGTGCCGTATCTGGATCTGTTTTTTAACCTTCACTGTAAAAAtcttacttttaaatttttttattaattgtacaCAGATGTGTGGGAATCaatgaattttgaataaaactctactaaagcataa
>XM_043224889.1
TTACTGTAAGAGTCTCAGTCTCAGTcgagctggtgtgtgtgtgtgtgtgtgtgtgtgatgatctGCTTCAGCATGAGGACTCTTTCTGTCGGCTTTCTCCTGCTGCTGTCTGTCTGGAGCGTGTATGTACGGGCTGACAGCAGGGGGATACGACAGAAGCGCGCATGGATCATTGATTCGTTTAGTATTGAGGAAGAATATTCTGGTACGTTTCCATATAAGCTAGGCAAGGTTGAGCTCGATAGGTCTTATTTAGTACATTTGGAACTACATGGTCAGGGTATGGATAAAGATCCAAAGGGTGTTCTCCGCATTACAGATACGGGTGAAATTTTTGTACTTAGAAAGGTGGACTATGAAACGGATATTAACATTCTCCATCTGAAATTTGAAGCAAGAAATCAATCCAACTATGAAGTGGTTACAAAACTTGGGCTTCAGATTCAAATATTGGACATAAATGACCACGCACCAGAATTTCAACCATCATCGGTCTATGAAGTGTCTGTTGATGAGTCACTTGCTCAAGgTAAAGAAATAACAACAGTAAAGGCAGTTGATCAGGATGATTCAAGTACAGACAACGGAACATTTGTTTTCACAATCAAGTCTGTCACACCAAAGACAGATAATGTTGAATTTTATATTCAGCAGCAAAAAGAATCCGggacaatttattttaagggttGCTTGGACTATGAGAAAGCTCAGAAATATACGATCCTTGTTGAAGCAAAGGACAAAGGGGAAAAGATACAGCTCTCAAGTACAAGTACACTGATAATCAATATTTCAGACAATAACAACAATCTTCCAGAGTTCTCTGGCAAAACAgGACCAGGGAAGGTCAAGGAGAGAGAAACTGGGGTTGAAGTTCTGCGACTGCAGGTAACAGACAAAGACGTCCGTGGTTCGAAAGCTTGGAAAGCCAAATACACAATCCATgaagataaaaaagaaatattcaaaatagaaacGGACCCCGTTACAAACGAAGGGATTTTAACAGTCATTAAGGTAAGAAGATGGTTGATACTTTATTCTCAAACCGACTACGAGGAGCAAACAAATCACAATCTGTCCATCAGTGTGCAGAATGAAATTCCTTATTTTTCCtgcaagattaaaaataaagtaccaAATGCCATGTGGGTGCTCGACAAAATACCCCAAAGCTCTGAGATGAGTGCTGGAAACCTCTATAACCGTATTCCAGTGACCATTTACGTAGAAGATGTCAATGACCCTCCAGTGTTTATACCCCCTGTGAAACACGTCGTGGTAATGGAGAACATTGATGTAGGAACAAGTCTTACAACCTTCACCGCTAAAGACATGGATGGAAGCCACGTAAACACATTTAAATTTGTTAAAGGTGAAGATATTGATAAATGGATAACTATTGATGCAAAGACTGGAAAAGTATCCACAATTAAAATTCTGGACAGAGAGTCACCATTTGTGAAAAACGCCACCTATACGGCAACCCTGTATGCTGTGGATGAAGGTGTCCCTCCGCTGACAGGCACTGGAACTCTAGTCATTCACCTGAACGATCAAAATGATAACGTACCaatattggaaaaaaatgtagtcACTATTTGTATAGATAAAGAGCCCACACTGGTCAACATCACAGCAGTAGACCTGGACTTTCCTCCATATGGATCACCTTTCTACTATGAGCTTTTAGGAGATGTCCTGGACAAATGGATGATTGAACCAGTGTACGGCACAACAGTGAGTCTcgttaaagaaaaacatgtttattcaGGCCATCACCTCCTCCAGATCAAGATATCAGACCAGCAGGGACTGTACTCCATCCAGAACCTGACGGTCACGGTGTGTGACTGCTCTGTCACTCCTAACTGTCACGTCAGGATGGTCTCGCAGGCTCGGATGGGGCCTGTTGCTGCCTGGATGGTTATTCTTGCGATTCTTATTCTTACAGTGTGCTTAATGAGTCTAACAATATCCTGCAAGGcagagaaaataattattatgatgGATGATGGGATCGGTCATCTCATCacaacaaatacagaaaatccAGGAACAGACTGCACGGTGATGTATAAAGGACAGCAGGCTGTTTCACAGACTCCATCATCGCTCTACAACGAGCAGATGTTCAACCGCTCTACCTATAGAaattccacaAGTCGTTCATACAGAAAAAATTTTCAGCAATCAAGCGTCAGATCAAGCGTTAGAAGCAATTATTCCTACAACATCAATGCATCTTACCTCACAGGACTCATCAACCAGaaagtacTTGCTCTCCAAACCCGTGATGAGGAACATGGTATTTACGAACCGCACTGTTACACAGATGAAGGACAGCCTATGGCCAGAGATGAACTGGATGCAATATCCATTTCTGAGGATGACTTTCATCCAGACATGCTTAAAAATCTGGACAGCAGGTTCTGTCAGTTAGCAACAATCTCCAGACCTGACCTGATGAAGAGGTGACGGTTATCTCAGAAAGCGTAGCctaactataaatatttaggacaaaatgctacatttttactACAGTTCTACAGTTGATTTGCTGAGTGTAAAGATCTAAAGAATTAAAAGTTTTAGGTGAACTCAggtttatttgcttttgttctgttgattttgatgtatttttttgtaggCTGATGTGTTCGTGTTGAAtgattttaagacatttaatacaaatataatggTGTTTTAAGTTGCTTATATGCGAGTTtgaagaaaatgtctttttttgacTGCATCCTGTGCCGTATCTGGATCTGTTTTTTAACCTTCACTGTAAAAAtcttacttttaaatttttttattaattgtacaCAGATGTGTGGGAATCaatgaattttgaataaaactctactaaagcataa
>XM_043224893.1
TTACTGTAAGAGTCTCAGTCTCAGTcgagctggtgtgtgtgtgtgtgtgtgtgtgtgatgatctGCTTCAGCATGAGGACTCTTTCTGTCGGCTTTCTCCTGCTGCTGTCTGTCTGGAGCGTGTATGTACGGGCTGACAGCAGGGGGATACGACAGAAGCGCGCATGGATCATTGATTCGTTTAGTATTGAGGAAGAATATTCTGGTACGTTTCCATATAAGCTAGGCAAGGTTGAGCTCGATAGGTCTTATTTAGTACATTTGGAACTACATGGTCAGGGTATGGATAAAGATCCAAAGGGTGTTCTCCGCATTACAGATACGGGTGAAATTTTTGTACTTAGAAAGGTGGACTATGAAACGGATATTAACATTCTCCATCTGAAATTTGAAGCAAGAAATCAATCCAACTATGAAGTGGTTACAAAACTTGGGCTTCAGATTCAAATATTGGACATAAATGACCACGCACCAGAATTTCAACCATCATCGGTCTATGAAGTGTCTGTTGATGAGTCACTTGCTCAAGgTAAAGAAATAACAACAGTAAAGGCAGTTGATCAGGATGATTCAAGTACAGACAACGGAACATTTGTTTTCACAATCAAGTCTGTCACACCAAAGACAGATAATGTTGAATTTTATATTCAGCAGCAAAAAGAATCCGggacaatttattttaagggttGCTTGGACTATGAGAAAGCTCAGAAATATACGATCCTTGTTGAAGCAAAGGACAAAGGGGAAAAGATACAGCTCTCAAGTACAAGTACACTGATAATCAATATTTCAGACAATAACAACAATCTTCCAGAGTTCTCTGGCAAAACAgGACCAGGGAAGGTCAAGGAGAGAGAAACTGGGGTTGAAGTTCTGCGACTGCAGGTAACAGACAAAGACGTCCGTGGTTCGAAAGCTTGGAAAGCCAAATACACAATCCATgaagataaaaaagaaatattcaaaatagaaacGGACCCCGTTACAAACGAAGGGATTTTAACAGTCATTAAGCAAACCGACTACGAGGAGCAAACAAATCACAATCTGTCCATCAGTGTGCAGAATGAAATTCCTTATTTTTCCtgcaagattaaaaataaagtaccaAATGCCATGTGGGTGCTCGACAAAATACCCCAAAGCTCTGAGATGAGTGCTGGAAACCTCTATAACCGTATTCCAGTGACCATTTACGTAGAAGATGTCAATGACCCTCCAGTGTTTATACCCCCTGTGAAACACGTCGTGGTAATGGAGAACATTGATGTAGGAACAAGTCTTACAACCTTCACCGCTAAAGACATGGATGGAAGCCACGTAAACACATTTAAATTTGTTAAAGGTGAAGATATTGATAAATGGATAACTATTGATGCAAAGACTGGAAAAGTATCCACAATTAAAATTCTGGACAGAGAGTCACCATTTGTGAAAAACGCCACCTATACGGCAACCCTGTATGCTGTGGATGAAGGTGTCCCTCCGCTGACAGGCACTGGAACTCTAGTCATTCACCTGAACGATCAAAATGATAACGTACCaatattggaaaaaaatgtagtcACTATTTGTATAGATAAAGAGCCCACACTGGTCAACATCACAGCAGTAGACCTGGACTTTCCTCCATATGGATCACCTTTCTACTATGAGCTTTTAGGAGATGTCCTGGACAAATGGATGATTGAACCAGTGTACGGCACAACAGTGAGTCTcgttaaagaaaaacatgtttattcaGGCCATCACCTCCTCCAGATCAAGATATCAGACCAGCAGGGACTGTACTCCATCCAGAACCTGACGGTCACGGTGTGTGACTGCTCTGTCACTCCTAACTGTCACGTCAGGATGGTCTCGCAGGCTCGGATGGGGCCTGTTGCTGCCTGGATGGTTATTCTTGCGATTCTTATTCTTACAGcagTGTGCTTAATGAGTCTAACAATATCCTGCAAGGcagagaaaataattattatgatgGATGATGGGATCGGTCATCTCATCacaacaaatacagaaaatccAGGAACAGACTGCACGGTGATGTATAAAGGACAGCAGGCTGTTTCACAGACTCCATCATCGCTCTACAACGAGCAGATGTTCAACCGCTCTACCTATAGAaattccacaAGTCGTTCATACAGAAAAAATTTTCAGCAATCAAGCGTCAGATCAAGCGTTAGAAGCAATTATTCCTACAACATCAATGCATCTTACCTCACAGGACTCATCAACCAGaaagtacTTGCTCTCCAAACCCGTGATGAGGAACATGGTATTTACGAACCGCACTGTTACACAGATGAAGGACAGCCTATGGCCAGAGATGAACTGGATGCAATATCCATTTCTGAGGATGACTTTCATCCAGACATGCTTAAAAATCTGGACAGCAGGTTCTGTCAGTTAGCAACAATCTCCAGACCTGACCTGATGAAGAGGTGACGGTTATCTCAGAAAGCGTAGCctaactataaatatttaggacaaaatgctacatttttactACAGTTCTACAGTTGATTTGCTGAGTGTAAAGATCTAAAGAATTAAAAGTTTTAGGTGAACTCAggtttatttgcttttgttctgttgattttgatgtatttttttgtaggCTGATGTGTTCGTGTTGAAtgattttaagacatttaatacaaatataatggTGTTTTAAGTTGCTTATATGCGAGTTtgaagaaaatgtctttttttgacTGCATCCTGTGCCGTATCTGGATCTGTTTTTTAACCTTCACTGTAAAAAtcttacttttaaatttttttattaattgtacaCAGATGTGTGGGAATCaatgaattttgaataaaactctactaaagcataa

Function

NR:

description
PREDICTED: B-cadherin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224888.1 True 2885 mRNA 0.40 16 2965600 2976846
XM_043224889.1 False 2882 mRNA 0.40 16 2965600 2976846
XM_043224893.1 False 2858 mRNA 0.40 16 2965600 2976846

Neighbor

gene id symbol gene type direction distance location
LOC122329171 NA coding upstream 8683 2955109 ~ 2956917 (+)
LOC122328870 NA coding upstream 13972 2948990 ~ 2951628 (+)
LOC122329170 NA coding upstream 17745 2946012 ~ 2947855 (+)
LOC122329167 NA coding upstream 26882 2923380 ~ 2938718 (+)
LOC122328848 LOC107709248,LOC107687290,LOC107558915 coding upstream 48052 2901814 ~ 2917548 (+)
LOC122328866 LOC107709226,LOC107576631 coding downstream 6492 2983338 ~ 2989016 (+)
rhoac rhoac,LOC107687289,LOC107558917,LOC105890655,LOC108438067,LOC102777028,LOC106572042 coding downstream 12669 2989515 ~ 2993355 (+)
twist3 twist3,LOC107696972,LOC107748453,LOC107554215,LOC107576512,LOC107704622,LOC107709223 coding downstream 156685 3133531 ~ 3137978 (+)
LOC122328845 LOC107554212,LOC107697038,LOC107571185,LOC107673381,LOC100001805,LOC107752455 coding downstream 342595 3319441 ~ 3352334 (+)
taf11 taf11,LOC107554211,LOC107566076,LOC107696971 coding downstream 454477 3431323 ~ 3433604 (+)
G154425 NA non-coding upstream 8465 2947774 ~ 2957135 (+)
LOC122328888 NA non-coding upstream 26519 2938721 ~ 2939081 (+)
G154369 NA non-coding upstream 114152 2851024 ~ 2851448 (+)
G154368 NA non-coding upstream 120445 2844852 ~ 2845155 (+)
LOC122328886 LOC107748448,LOC107680059,LOC107565963 non-coding upstream 122578 2835863 ~ 2843022 (+)
LOC122328882 NA non-coding downstream 34335 3011181 ~ 3021971 (+)
LOC122328883 NA non-coding downstream 72552 3049398 ~ 3051276 (+)
G154487 tmem106c,LOC107704621 non-coding downstream 135676 3112522 ~ 3113171 (+)
G154517 NA non-coding downstream 229636 3206482 ~ 3206688 (+)
G154561 NA non-coding downstream 265369 3242215 ~ 3242722 (+)
G154424 NA other upstream 8875 2923382 ~ 2956725 (+)
LOC122329169 NA other upstream 21794 2925308 ~ 2943806 (+)
prdm5 prdm5,LOC107698519,LOC107669703 other upstream 608873 2312722 ~ 2356727 (+)
LOC122328869 LOC107723021,LOC107694620,LOC107577481 other upstream 832767 2129998 ~ 2132833 (+)
LOC122328880 LOC107723010,LOC107683284,LOC107694619 other upstream 894201 2068668 ~ 2071399 (+)
rbm10 LOC107709225,LOC107687301,LOC107704624,LOC107748436 other downstream 18323 2995169 ~ 3010017 (+)
mitfb LOC107704626,LOC107709243,LOC107748437,LOC108438070,LOC107687304,LOC107558923,LOC107709232 other downstream 83663 3060509 ~ 3097035 (+)
ube2t ube2t,LOC107746510,LOC107707375,LOC107673550 other downstream 717806 3694652 ~ 3697022 (+)
LOC122328459 g6pd,LOC107723128,LOC107697003,LOC107594489 other downstream 1840519 4817365 ~ 4835484 (+)
si:ch211-220i18.4 LOC107551506,LOC107666586,LOC107559855,LOC107681367,LOC107705652,LOC108275527,LOC107100285 other downstream 3615756 6592602 ~ 6598532 (+)

Expression


Co-expression Network