prdm5 (prdm5,LOC107698519,LOC107669703)


Basic Information

Item Value
gene id prdm5
gene name prdm5,LOC107698519,LOC107669703
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 2312722 ~ 2356727 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224903.1
AGTAACATGGAAGACCAGACTGGACTGAGATTTACAAACACAGCGAGCAAAGACAATCAAAGCAGCTTCTAATCTGTGTTTCCGAGCGCGTTTCGTCCgttttgttttgaagaaagGTGTTTTCCTGAAGTAATGAGGATGTTGGGCATGTATGTGCCGGACAGATTCGTGCTGAAGTCCTCTAAAGTTCAGGACGGGATGGGGCTGTACACTGCCAGAGCAGTCAAAAAGGGTGAGAAGTTCGGTCCGTTCGCAGGTGAAAAGCGGATGCTGGGCGACTTGGATGAAAGCATGGATCCTCGACTGATGTGGGAGGTTCGAGGGAATAAAGGTGACGTTCTTTATATCCTGGACGCCAGTAACCCTCGGCACGCTAACTGGCTCCGCTTCGTTCACCAGGCCCCTTCACAGGAGCAGAAGAACCTGGCCGCCATTCAGGACGGAGAGAATATCTTCTATCTCGCTGTCGACGACATCGAGACGGATACGGAGCTTCTGATTGGCTACCTGGACAGTGAtatggaggaggaagaggaggacctCGAGGAAGACCAGGACATCAAAGACGAAGATGGGAACAGCGCAGAGAGCAAACACCTCAGTGCAGAAACAGAGCTGGCGATTAAGAAGGAAGACTACCCGTGCCTGCTGTGTGAGAGCAGCTTCCCCAGTGAAGAAGTGTTAGCCGAACATCTGCAGAGTCTTCATCAGAGAGGAAGCACGGAGGACAAAGAGTTCAAATGTCGTACCTGCGGAAAAGAGTTTCCTGTCAAACAGGCCCTGCAGCGCCATGTTCTTCACTGCACAGAGAGCTCGGCTTCGTCAGGAGACCCTTCCAAAGCTCATCAGTGCGTCCTGTGTCACAGCACCTTCTCTTCGGAGTCCTGCTTCGAGCAGCACAAAGAGGTGTGTAAAGGAGACGGCCGCTTCATCTGTAAGGTTGAGAGCTGTGGGAAGAGATTCAGGAGTAAAGACGCCCTGAAGAAACACAAAGGCAACGTCCACACAGggagTGCTCGCAGGAAGTTGGTATGCACCATCTGTAATAAGAAGTGCTCATCCTCACTCAACCTGCAGGAGCATCGCAAGgTTCACGAGATTTTTGACTGTACTGACTGTGATAAAAAGTTCATCTCCACGAATCAGCTGAAGCGACACATGATCACGCACTCTGAAAAGCGTCCGTACACCTGCGACATCTGCAGCCGGAGTTTCAAGCGTCTGGACCAGGCCACGGCTCATAAGATCATCCACAGCGAAGATAAACCGTACAAGTGTAAGCTCTGCTGGAAGGAGTTCGCCCACCGCAACGTCTACAAGAACCACAAAAAGACTCATTCAGAAGAAAGGCCTTTCCAATGCGAGGAGTGCAAGGCCCTCTTCCGCACCCCGTTCTCTTTACAGCGCCACCTCCTCATTCATACCAGTGAGAGGACGTTTAAGTGTGACCAGTGTGACGCCACCTTCAAGCGCAAGGACACTCTGAACGTGCACATCCAGGTCGTTCACGACGGCCACAAGAAGTACAAGTGTGACCTGTGCGAGAAGGCCTTCGTGACGCCGTCTGTGCTCAAGAGCCACAAGAAGACCCATACAGGAGAGAAGGAGAAGATCTGTCCGTACTGCGGCCAGAAGTTCGCCAGCAACGGCACACTGAGAGTGCACATCCGCAGCCACACGGGTGAACGGCCGTATCAGTGCCCATACTGTGACAAGGCCTTCAGCAAGAACGACGGCCTTAAAAtgcacatacgcacacacacgaGGGAAAAGCCATATAAATGCAGCGAGTGCAACAAGGCCTTCAGTCAGAAGCGCGGCCTGGATGagcacatgcgcacacacaccggagagaagcccttcCAGTGCGACGTGTGTGACCTGTCCTTTAGTTTGAAGAAGATGTTGATCAGACACAAGCTGACCCATAATCCCAACAGACCCATGGCTGAATGCTCCCTGTGCCACAAGAAGTTCACCCGAAACGACTACCTCAAAGTCCACATGGAGAACGTCCACGGAGAGACCGAGGGATAGACGGTCACACACAAGCCTTATATAACCAATGCATAAATTCACAGAGTAGAAACCAGCATTGATGTACTTCAACTGGCCAAGCTCTTTCCAAAGATCTGCGTCATCTACATGTCCTTCAGACGTTTAACACTCCATCGTATCGCTTTTTAATCCTGGctgcattttcagtttaaataggAGGAAGgtattaaaatgtgcaattgTACAGAGAAATGGAGTATATCCATCATAACTGACCTATTTGATTTTTGTCCTTTTGTATGTAAGTATCTGTTGCGTGACCAAAGATCATGACCAGACAGTTTTCTACAACCTTGTTGAGAGTAAAGTTTGTTGGTTTGCATTTAACTGTATTATCCGATATTTATCGTTTTGTATTTTCGGCATTCAAGCTCACATGAGGTTTGCGTTTGATTGTCAGATTAACATCTTGCGGTTCTaagtttgcatttcatttggatGAATGAACGATTGAATCGCTGATATCACTAATCTGGTCAgcgtgttgttgtttttttttttaaataaacatttttcccGACCCTGCCCCGTCCATCTGCGGAAGGCATGATTCAGTGATCTGTGGGATTCAAAAGATAGTGCTGCCCTTTACTTAATTATAAACACTTGATTCTTGGTAAATGGTTGGTGTCTGAGGAATCGGATGTGCTTTGATGCTTGATTAGACATCCTCGGTCAATGATTGTGCCATTGGTTATAGCATAATTAAAACCTTAGTGTGGGTTTGgatagaaaaataattactcATTAGGTCTGGGATCCAGAGCCAAATGCACAAATTCTGCTTTTGGGCTCTGAACTTTTATAAGCATGGATGAGATGGTGAcctggggcctcatttataaagtgtGCGCATGCTCCGATTTTATCGTAGAGTGTGTGTACGCTTAAATCCATGGCAACGCTCGTATTTATAAAAACTTTCTTTGACGTGGAAAAGTGCTTAGCATCACGTCAGGGTCTGAGCAGACGTACACACTTTTTACTGTAGGGGTATTACAGGTTTTTGAAGAAGAAAGCTGTTCCTGCAGCTTGCTGCTGTAAATTAtgatgcaacattttataatagCCTCCTGGTCATAAATACTatgcatttttaagagtgttcCAACAAATAacttctgatttgctgcttatcaATAGCTAGTAAAGTAgatgttaagtttaggtttgggttaggattaggggatctaaaatatggtaATCACGCAGAATAAAGGACTTCTTTAAGAGTTATGAATTCGTTTTTTAACTCTGTTTGAATATTAAACGTCTGAGCTATTTAATTCAGGCTGAGCTTAAGAATCGTCTTTTCTGATTTCtagatttctttcattttgaggTGGAGACTGAATGTCCTCTTTCACATGATGTTCCCTCTTGTCATTCCTTGCTTTAATGTCTCTTTGTGTTATTTTGACCTCTATAAGCATGTGGGAGCGAATTCTTGTTGGATTAAAAGGGTCTTTATCtccgaaaaacaaaaaaaatgaagaatgaatTGCAGCTGAGGATTTTCTCCTACCCACTTTTCAAATCTTCTTTCTGGCTCATGTCTTGTTGGCTGAAATAAGttgtatatattgaatattatttgcACATGATCCTACATCCCTCTTGTCTCTCGTTTTCTCCtctgttttacatttctgttttc
>XR_006247843.1
AGTAACATGGAAGACCAGACTGGACTGAGATTTACAAACACAGCGAGCAAAGACAATCAAAGCAGCTTCTAATCTGTGTTTCCGAGCGCGTTTCGTCCgttttgttttgaagaaagGTGTTTTCCTGAAGTAATGAGGATGTTGGGCATGTATGTGCCGGACAGATTCGTGCTGAAGTCCTCTAAAGTTCAGGACGGGATGGGGCTGTACACTGCCAGAGCAGTCAAAAAGGGTGAGAAGTTCGGTCCGTTCGCAGGTGAAAAGCGGATGCTGGGCGACTTGGATGAAAGCATGGATCCTCGACTGATGTGGGAGGTTCGAGGGAATAAAGGTGACGTTCTTTATATCCTGGACGCCAGTAACCCTCGGCACGCTAACTGGCTCCGCTTCGTTCACCAGGCCCCTTCACAGGAGCAGAAGAACCTGGCCGCCATTCAGGACGGAGAGAATATCTTCTATCTCGCTGTCGACGACATCGAGACGGATACGGAGCTTCTGATTGGCTACCTGGACAGTGAtatggaggaggaagaggaggacctCGAGGAAGACCAGGACATCAAAGACGAAGATGGGAACAGCGCAGAGAGCAAACACCTCAGTGCAGAAACAGAGCTGGCGATTAAGAAGGAAGACTACCCGTGCCTGCTGTGTGAGAGCAGCTTCCCCAGTGAAGAAGTGTTAGCCGAACATCTGCAGAGTCTTCATCAGAGAGGAAGCACGGAGGACAAAGAGTTCAAATGTCGTACCTGCGGAAAAGAGTTTCCTGTCAAACAGGCCCTGCAGCGCCATGTTCTTCACTGCACAGAGAGCTCGGCTTCGTCAGGAGACCCTTCCAAAGCTCATCAGTGCGTCCTGTGTCACAGCACCTTCTCTTCGGAGTCCTGCTTCGAGCAGCACAAAGAGGTGTGTAAAGGAGACGGCCGCTTCATCTGTAAGGTTGAGAGCTGTGGGAAGAGATTCAGGAGTAAAGACGCCCTGAAGAAACACAAAGGCAACGTCCACACAGggagTGCTCGCAGGAAGTTGGTATGCACCATCTGTAATAAGAAGTGCTCATCCTCACTCAACCTGCAGGAGCATCGCAAGgTTCACGAGATTTTTGACTGTACTGACTGTGATAAAAAGTTCATCTCCACGAATCAGCTGAAGCGACACATGATCACGCACTCTGAAAAGCGTCCGTACACCTGCGACATCTGCAGCCGGAGTTTCAAGCGTCTGGACCAGGCCACGGCTCATAAGATCATCCACAGCGAAGATAAACCGTACAAGTGTAAGCTCTGCTGGAAGGAGTTCGCCCACCGCAACGTCTACAAGAACCACAAAAAGACTCATTCAGAAGAAAGGCCTTTCCAATGCGAGGAGTGCAAGGCCCTCTTCCGCACCCCGTTCTCTTTACAGCGCCACCTCCTCATTCATACCAGTGAGAGGACGTTTAAGTGTGACCAGTGTGACGCCACCTTCAAGCGCAAGGACACTCTGAACGTGCACATCCAGGTCGTTCACGACGGCCACAAGAAGTACAAGTGTGACCTGTGCGAGAAGGCCTTCGTGACGCCGTCTGTGCTCAAGAGCCACAAGAAGACCCATACAGGAGAGAAGGAGAAGATCTGTCCGTACTGCGGCCAGAAGTTCGCCAGCAACGGCACACTGAGAGTGCACATCCGCAGCCACACGGGAAAAGCCATATAAATGCAGCGAGTGCAACAAGGCCTTCAGTCAGAAGCGCGGCCTGGATGagcacatgcgcacacacaccggagagaagcccttcCAGTGCGACGTGTGTGACCTGTCCTTTAGTTTGAAGAAGATGTTGATCAGACACAAGCTGACCCATAATCCCAACAGACCCATGGCTGAATGCTCCCTGTGCCACAAGAAGTTCACCCGAAACGACTACCTCAAAGTCCACATGGA

Function

symbol description
prdm5 Predicted to enable DNA-binding transcription factor activity and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Acts upstream of or within embryonic cranial skeleton morphogenesis; regulation of Wnt signaling pathway; and regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in head; intestinal epithelium; nervous system; and pectoral fin. Human ortholog(s) of this gene implicated in brittle cornea syndrome 2. Orthologous to human PRDM5 (PR/SET domain 5).

NR:

description
PREDICTED: PR domain zinc finger protein 5 isoform X3

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:2000050 regulation of non-canonical Wnt signaling pathway biological_process
GO:0048702 embryonic neurocranium morphogenesis biological_process
GO:0048703 embryonic viscerocranium morphogenesis biological_process
GO:0060828 regulation of canonical Wnt signaling pathway biological_process
GO:0046872 metal ion binding molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
K22534 PRDM5; PR domain zinc finger protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224903.1 True 3715 mRNA 0.45 16 2312722 2356727
XR_006247843.1 False 1923 transcript 0.52 15 2312722 2355021

Neighbor

gene id symbol gene type direction distance location
ndnf ndnf,LOC107549170,LOC107723023,LOC107698518,LOC107558793,LOC107710242,LOC107669702 coding upstream 8689 2287981 ~ 2304033 (+)
LOC122328881 NA coding upstream 210041 2088312 ~ 2102681 (+)
LOC122328839 LOC107549167,LOC107723011 coding upstream 225303 2071739 ~ 2087419 (+)
zhx3b zhx3,LOC107663202,LOC107747727,LOC107703618,LOC107713571,LOC107562626,LOC107557488 coding upstream 360594 1941304 ~ 1952128 (+)
rnf114 rnf114,LOC107713569,LOC107724213 coding upstream 655139 1652564 ~ 1657583 (+)
slc34a2b LOC107698513,LOC107570774,LOC107669705,LOC107710230 coding downstream 94963 2451690 ~ 2461440 (+)
psmb11b LOC107549161,LOC107719954,LOC103370428,LOC105925323,LOC102212057 coding downstream 122932 2479659 ~ 2483007 (+)
trnal-uaa_38 NA coding downstream 129366 2486093 ~ 2486175 (+)
LOC122328832 utrn,LOC107669681,LOC107570770,LOC107710234,LOC107718008,LOC107549160,LOC108411446,LOC108275814 coding downstream 131992 2488719 ~ 2656582 (+)
stxbp3 LOC107687296,LOC107718001,LOC107571803,LOC107748431,LOC107680060,LOC107565974 coding downstream 441815 2798542 ~ 2809875 (+)
G154230 NA non-coding upstream 37859 2271873 ~ 2274863 (+)
G154207 cpeb2,LOC108276376 non-coding upstream 63169 2215989 ~ 2249553 (+)
G154146 tcp1,LOC107669696,LOC107549175,LOC107558788,LOC107694622 non-coding upstream 178799 2133010 ~ 2133923 (+)
G154156 LOC107558790,LOC107669693 non-coding upstream 201389 2109393 ~ 2111333 (+)
G154155 NA non-coding upstream 204150 2108334 ~ 2108572 (+)
G154285 NA non-coding downstream 300647 2657374 ~ 2657685 (+)
G154365 NA non-coding downstream 440400 2797127 ~ 2797837 (+)
LOC122328886 LOC107748448,LOC107680059,LOC107565963 non-coding downstream 479136 2835863 ~ 2843022 (+)
G154368 NA non-coding downstream 488125 2844852 ~ 2845155 (+)
G154369 NA non-coding downstream 494297 2851024 ~ 2851448 (+)
LOC122328869 LOC107723021,LOC107694620,LOC107577481 other upstream 179889 2129998 ~ 2132833 (+)
LOC122328880 LOC107723010,LOC107683284,LOC107694619 other upstream 241323 2068668 ~ 2071399 (+)
snai1b LOC107694621,LOC107723015,LOC107549169,LOC107558792,LOC107738552,LOC107669687 other upstream 258747 2050032 ~ 2053975 (+)
G154108 plcg1 other upstream 347605 1964273 ~ 1965117 (+)
G154092 NA other upstream 358039 1952171 ~ 1954683 (+)
G154424 NA other downstream 566655 2923382 ~ 2956725 (+)
LOC122329169 NA other downstream 568581 2925308 ~ 2943806 (+)
rbm10 LOC107709225,LOC107687301,LOC107704624,LOC107748436 other downstream 638442 2995169 ~ 3010017 (+)
mitfb LOC107704626,LOC107709243,LOC107748437,LOC108438070,LOC107687304,LOC107558923,LOC107709232 other downstream 703782 3060509 ~ 3097035 (+)
ube2t ube2t,LOC107746510,LOC107707375,LOC107673550 other downstream 1337925 3694652 ~ 3697022 (+)

Expression


Co-expression Network