LOC122328862 (LOC107709224,LOC107558908,LOC107704618,LOC107696950)


Basic Information

Item Value
gene id LOC122328862
gene name LOC107709224,LOC107558908,LOC107704618,LOC107696950
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 3120862 ~ 3128222 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224915.1
CCCACACAGAGGGATAAGTGTTCACTATAAACAAGGAGAACCATAGCACATGTTCTTTGTGAAAGttgctttcattattattaatttcctctggtttcctttttctttcaatGGCCATCTGAGTTAGCCGCAGAACATTTATCCAATTTTCCATGAAAGATTCTTGTTTTGTCCCTAAACATCATGTCATTAATATAAAGCATTCTCACCCATTTCTCGGCAATGTCGCCTTTACCTGGAATGTTGCAGGATAAGCTCAGAACAGGTTACACCAGTAACTGCTTCTCAAAAGCGACACGCAGTAGTGCTTACGCTCAGTACGTATAGACATGTCTCAAAGCAAACCTGAGGAGCGTCTAGCTTTGGAGTTGAGCTGTGCCATCTGTTTGCAGCTGTACCGTGATCCCGTGACCCTTCCTTGTGGACACAATTATTGCTTGGGTTGTATACAAAATGCTGCCAGTGCAGAAGATCCCAAGTCGCCAAAACGATGCCCTGAATGCAGGGAAGAGTACGGCAGCACGGAGACGCTTCCCAAGAACTTCAAGCTTAGCAGCATCGTCGACGGGTTCCTGGTGGCCACGACAGGTGGCGGACTGAGAGGAGGCCCTACGATGCCATGTGACCAGTGTCTGGACAACCCTGTCGCTGCGGTGAAGTTCTGCACACGCTGTGAGATGTCACTGTGCCCCGGACATCTCAAAAAACATGAGGATCAGTACCGCTCGCTGCACGTCTTAGTGGAGCTGCCCGCGGAACGGGATGGGAAGAGGTGCCCGGTGCACCTGAAGGTGACGGAGTATCTGTGTGCGCAGGAGCGCCTGTTCCTCTGCTCCGAGTGCTTGATGGAGGGCACTCACCAGCACCATGAGGTGCAGACCTTTGAGGTGGCCAAAGAGGAAATGAAGAGAGTTCTTGAGGAACTGGGGAGGTCTGTGTCTGACAAGCTACAGATTACAGAAGCTCTGGTGAAAAGTGCCAGTGAAGGTCCTACAGACAAGGCCGAAGATAAACTGGTGGCCAGAGCAAACATACTGCTAGACAACATGAGTACCCTTATAAGTACATACAAGAGTCGCATGAGTACTATGATGAACGACGAGCTCCATTCGCGGGACAAAGGCTGGCAGGCCAATCTATGTGACTTGGAGGGTTGTCTACACCAGCTGCAGGAGGCCCAAAAGTGCACCGGTGAGGTTCTCTCTCAATCCTCAGAGTTTCTCTTCATCCAGAACTACCTCAACGTCGAAGCAAGGGTCCGCCAGGCCGCTAACGTCACCATTCCTGCTCTACCTTCCCAAGAGTCTTCCAATGCCAAGCAACTGCGCTCGAGCCTACGTACAGACGCCTTCCATGCCGAGATGAGTCTTCTGTTGGAGTACCTCCACGGCATGATGAACCCTCTAGACCTGACCTTCAACGCAGCCACGGCTCATCCTAGCCTTCTGCTGTCCAGCGATCTCAAAACAGTCAAGCAGTGTGCCGGAGTTAAGAGCAGCACCGCTGGAGATCAGAGCGAGCGCTTCTCCACGGCCACTCAGGTCATGTGCTCCCAGGGTTTCTCCACGGGAGTTCACATGTGGGCAGTGGAGGTCGGTCCTGGGTGCACGTGGTCTCTGGGACTGTGCTACAAAAGCATCCCACATAAAGGTGACCACAGCAGGCTGGGGCATAACACCAGTTCCTGGAGGCTGCAGTGGAAAAGCAAGAAGCTGACAGCGTGCTTTGACTCGGCTAATGTGGTTGTAGGTGAAGGGCTGGTCATGCCGCCAAAGAAGGTGGAAGTGACCCTGGATTACGAAGGAGGAACTATTGCATTCCACAGCTCAGGTCAGGGAGGGAGAAGGCAGCACCTTCATACATTCAGTGCCATGTTCAAGGACACAGTATATCCTGCGTTCGCCATTCATTCTTCTTCTGAGGAATCATGGATAACTCTTCTGAGTGGAGTTTGACTGAATCAGCATGCTTTCATTTTCACTCTCGCTTCAGTCTCTTGCTCCATtctttatgcattattatgcatCTATCTGCACTTGGAAAGAAACGCCCTGGCACAGTTCAGGAATGTCATGGACATTTTATTTACTACAGAAAACGAGTTGGCAGTTCttgatgtacagtaaaaatgctggtatgataataataattcatatgtgTTGCAACCACAATTAGAAATTAAACAGTGAATGATTTGTTTGTAACACTAACTGGCATGCACGTAAAAAGAGAAGAAACTGAAcagattttgtttaaatactttGAAGTCTTAGTTTCTTTTGCCATAAATAAGATGAGACTTTTATGTAAGTGTacgtaatgtattttatatccAGAGGTCAGATCTTTCTGTCTCTgagaaataatcaaataaagaaagagagcATGAA
>XM_043224916.1
TCCCTCAAGACTGACCTTCGCTCACCTCTCTCTCCAGAGCTCTGGGTCACCTCCACACATCTGGGAGCCATTTCCTTCCGAAAGGACTCACTTCCTGTGGGCAGTCGCTTAGCATGGAGGTGTTTCTGCAAGAGGTCATGCAAAAGCTGTACCGTGATCCCGTGACCCTTCCTTGTGGACACAATTATTGCTTGGGTTGTATACAAAATGCTGCCAGTGCAGAAGATCCCAAGTCGCCAAAACGATGCCCTGAATGCAGGGAAGAGTACGGCAGCACGGAGACGCTTCCCAAGAACTTCAAGCTTAGCAGCATCGTCGACGGGTTCCTGGTGGCCACGACAGGTGGCGGACTGAGAGGAGGCCCTACGATGCCATGTGACCAGTGTCTGGACAACCCTGTCGCTGCGGTGAAGTTCTGCACACGCTGTGAGATGTCACTGTGCCCCGGACATCTCAAAAAACATGAGGATCAGTACCGCTCGCTGCACGTCTTAGTGGAGCTGCCCGCGGAACGGGATGGGAAGAGGTGCCCGGTGCACCTGAAGGTGACGGAGTATCTGTGTGCGCAGGAGCGCCTGTTCCTCTGCTCCGAGTGCTTGATGGAGGGCACTCACCAGCACCATGAGGTGCAGACCTTTGAGGTGGCCAAAGAGGAAATGAAGAGAGTTCTTGAGGAACTGGGGAGGTCTGTGTCTGACAAGCTACAGATTACAGAAGCTCTGGTGAAAAGTGCCAGTGAAGGTCCTACAGACAAGGCCGAAGATAAACTGGTGGCCAGAGCAAACATACTGCTAGACAACATGAGTACCCTTATAAGTACATACAAGAGTCGCATGAGTACTATGATGAACGACGAGCTCCATTCGCGGGACAAAGGCTGGCAGGCCAATCTATGTGACTTGGAGGGTTGTCTACACCAGCTGCAGGAGGCCCAAAAGTGCACCGGTGAGGTTCTCTCTCAATCCTCAGAGTTTCTCTTCATCCAGAACTACCTCAACGTCGAAGCAAGGGTCCGCCAGGCCGCTAACGTCACCATTCCTGCTCTACCTTCCCAAGAGTCTTCCAATGCCAAGCAACTGCGCTCGAGCCTACGTACAGACGCCTTCCATGCCGAGATGAGTCTTCTGTTGGAGTACCTCCACGGCATGATGAACCCTCTAGACCTGACCTTCAACGCAGCCACGGCTCATCCTAGCCTTCTGCTGTCCAGCGATCTCAAAACAGTCAAGCAGTGTGCCGGAGTTAAGAGCAGCACCGCTGGAGATCAGAGCGAGCGCTTCTCCACGGCCACTCAGGTCATGTGCTCCCAGGGTTTCTCCACGGGAGTTCACATGTGGGCAGTGGAGGTCGGTCCTGGGTGCACGTGGTCTCTGGGACTGTGCTACAAAAGCATCCCACATAAAGGTGACCACAGCAGGCTGGGGCATAACACCAGTTCCTGGAGGCTGCAGTGGAAAAGCAAGAAGCTGACAGCGTGCTTTGACTCGGCTAATGTGGTTGTAGGTGAAGGGCTGGTCATGCCGCCAAAGAAGGTGGAAGTGACCCTGGATTACGAAGGAGGAACTATTGCATTCCACAGCTCAGGTCAGGGAGGGAGAAGGCAGCACCTTCATACATTCAGTGCCATGTTCAAGGACACAGTATATCCTGCGTTCGCCATTCATTCTTCTTCTGAGGAATCATGGATAACTCTTCTGAGTGGAGTTTGACTGAATCAGCATGCTTTCATTTTCACTCTCGCTTCAGTCTCTTGCTCCATtctttatgcattattatgcatCTATCTGCACTTGGAAAGAAACGCCCTGGCACAGTTCAGGAATGTCATGGACATTTTATTTACTACAGAAAACGAGTTGGCAGTTCttgatgtacagtaaaaatgctggtatgataataataattcatatgtgTTGCAACCACAATTAGAAATTAAACAGTGAATGATTTGTTTGTAACACTAACTGGCATGCACGTAAAAAGAGAAGAAACTGAAcagattttgtttaaatactttGAAGTCTTAGTTTCTTTTGCCATAAATAAGATGAGACTTTTATGTAAGTGTacgtaatgtattttatatccAGAGGTCAGATCTTTCTGTCTCTgagaaataatcaaataaagaaagagagcATGAA
>XM_043224917.1
AAAGCCCCCACACAGAGGGATAAGTGTTCACTATAAACAAGGAGAACCATAGCACATGTTCTTTGTGAAAGttgctttcattattattaatttcctctggtttcctttttctttcaatGGCCATCTGAGTTAGCCGCAGAACATTTATCCAATTTTCCATGAAAGATTCTTGTTTTGTCCCTAAACATCATGTCATTAATATAAAGCATTCTCACCCATTTCTCGGCAATGTCGCCTTTACCTGGAATGTTGCAGGATAAGCTCAGAACAGGTTACACCAGTAACTGCTTCTCAAAAGCGACACGCAGTAGTGCTTACGCTCAGTACGTATAGACATGTCTCAAAGCAAACCTGAGGAGCGTCTAGCTTTGGAGTTGAGCTGTGCCATCTGTTTGCAGCTGTACCGTGATCCCGTGACCCTTCCTTGTGGACACAATTATTGCTTGGGTTGTATACAAAATGCTGCCAGTGCAGAAGATCCCAAGTCGCCAAAACGATGCCCTGAATGCAGGGAAGAGTACGGCAGCACGGAGACGCTTCCCAAGAACTTCAAGCTTAGCAGCATCGTCGACGGGTTCCTGGTGGCCACGACAGGTGGCGGACTGAGAGGAGGCCCTACGATGCCATGTGACCAGTGTCTGGACAACCCTGTCGCTGCGGTGAAGTTCTGCACACGCTGTGAGATGTCACTGTGCCCCGGACATCTCAAAAAACATGAGGATCAGTACCGCTCGCTGCACGTCTTAGTGGAGCTGCCCGCGGAACGGGATGGGAAGAGGTGCCCGGTGCACCTGAAGGTGACGGAGTATCTGTGTGCGCAGGAGCGCCTGTTCCTCTGCTCCGAGTGCTTGATGGAGGGCACTCACCAGCACCATGAGGTGCAGACCTTTGAGGTGGCCAAAGAGGAAATGAAGAGAGTTCTTGAGGAACTGGGGAGGTCTGTGTCTGACAAGCTACAGATTACAGAAGCTCTGGTGAAAAGTGCCAGTGAAGGTCCTACAGACAAGGCCGAAGATAAACTGGTGGCCAGAGCAAACATACTGCTAGACAACATGAGTACCCTTATAAGTACATACAAGAGTCGCATGAGTACTATGATGAACGACGAGCTCCATTCGCGGGACAAAGGCTGGCAGGCCAATCTATGTGACTTGGAGGGTTGTCTACACCAGCTGCAGGAGGCCCAAAAGTGCACCGAGTCTTCCAATGCCAAGCAACTGCGCTCGAGCCTACGTACAGACGCCTTCCATGCCGAGATGAGTCTTCTGTTGGAGTACCTCCACGGCATGATGAACCCTCTAGACCTGACCTTCAACGCAGCCACGGCTCATCCTAGCCTTCTGCTGTCCAGCGATCTCAAAACAGTCAAGCAGTGTGCCGGAGTTAAGAGCAGCACCGCTGGAGATCAGAGCGAGCGCTTCTCCACGGCCACTCAGGTCATGTGCTCCCAGGGTTTCTCCACGGGAGTTCACATGTGGGCAGTGGAGGTCGGTCCTGGGTGCACGTGGTCTCTGGGACTGTGCTACAAAAGCATCCCACATAAAGGTGACCACAGCAGGCTGGGGCATAACACCAGTTCCTGGAGGCTGCAGTGGAAAAGCAAGAAGCTGACAGCGTGCTTTGACTCGGCTAATGTGGTTGTAGGTGAAGGGCTGGTCATGCCGCCAAAGAAGGTGGAAGTGACCCTGGATTACGAAGGAGGAACTATTGCATTCCACAGCTCAGGTCAGGGAGGGAGAAGGCAGCACCTTCATACATTCAGTGCCATGTTCAAGGACACAGTATATCCTGCGTTCGCCATTCATTCTTCTTCTGAGGAATCATGGATAACTCTTCTGAGTGGAGTTTGACTGAATCAGCATGCTTTCATTTTCACTCTCGCTTCAGTCTCTTGCTCCATtctttatgcattattatgcatCTATCTGCACTTGGAAAGAAACGCCCTGGCACAGTTCAGGAATGTCATGGACATTTTATTTACTACAGAAAACGAGTTGGCAGTTCttgatgtacagtaaaaatgctggtatgataataataattcatatgtgTTGCAACCACAATTAGAAATTAAACAGTGAATGATTTGTTTGTAACACTAACTGGCATGCACGTAAAAAGAGAAGAAACTGAAcagattttgtttaaatactttGAAGTCTTAGTTTCTTTTGCCATAAATAAGATGAGACTTTTATGTAAGTGTacgtaatgtattttatatccAGAGGTCAGATCTTTCTGTCTCTgagaaataatcaaataaagaaagagagcATGAA

Function

NR:

description
PREDICTED: E3 ubiquitin/ISG15 ligase TRIM25-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224915.1 True 2390 mRNA 0.48 2 3120862 3124657
XM_043224916.1 False 2144 mRNA 0.50 3 3120862 3128222
XM_043224917.1 False 2285 mRNA 0.48 3 3120862 3124663

Neighbor

gene id symbol gene type direction distance location
LOC122328875 LOC107709230,LOC107558910,LOC107696973,LOC107704617,LOC107554205,LOC107748447 coding downstream 119 3114692 ~ 3120743 (-)
tmem106c tmem106c,LOC107697039,LOC107704621,LOC107558924 coding downstream 7433 3107007 ~ 3113429 (-)
LOC122328874 LOC107704620,LOC107748451 coding downstream 13922 3102068 ~ 3106940 (-)
LOC122328867 LOC107558923,LOC107687304,LOC107709232,LOC107748446 coding downstream 20974 3095063 ~ 3099888 (-)
frmd4bb frmd4bb,LOC107558919,LOC107687288,LOC107709245,LOC107704625,LOC107748434 coding downstream 58790 3014616 ~ 3062072 (-)
hdac7a LOC107704627,LOC107709222,LOC107752451 coding upstream 14061 3142283 ~ 3206411 (-)
LOC122329174 NA coding upstream 159901 3288123 ~ 3298955 (-)
LOC122328834 anks1a coding upstream 224739 3352961 ~ 3430053 (-)
uhrf1bp1 uhrf1bp1,LOC107697035,LOC107672988,LOC107566066,LOC107554204 coding upstream 319337 3447559 ~ 3473454 (-)
ngfa ngfa,LOC107709229,LOC107554210,LOC107673522,LOC107566067,LOC107696968,LOC107735269 coding upstream 401311 3529533 ~ 3554513 (-)
G154525 NA non-coding downstream 107681 3011419 ~ 3013181 (-)
G154519 NA non-coding downstream 111384 3006483 ~ 3009478 (-)
G154520 LOC107709225,LOC107565972 non-coding downstream 122898 2996765 ~ 2997964 (-)
G154443 NA non-coding downstream 170204 2925204 ~ 2950658 (-)
G154444 NA non-coding downstream 188625 2925010 ~ 2932237 (-)
G154663 NA non-coding upstream 504137 3632359 ~ 3633333 (-)
G154671 NA non-coding upstream 527064 3655286 ~ 3655596 (-)
G154672 NA non-coding upstream 528066 3656288 ~ 3656543 (-)
G154684 LOC107746508,LOC107696966,LOC107559163 non-coding upstream 544457 3672679 ~ 3673581 (-)
G154687 LOC107559166,LOC107559158,LOC107746523,LOC107696944,LOC107696945 non-coding upstream 564715 3692937 ~ 3693265 (-)
G154446 NA other downstream 163590 2925048 ~ 2957272 (-)
G154445 NA other downstream 169234 2925305 ~ 2951628 (-)
si:zfos-905g2.1 si:zfos-905g2.1 other downstream 246104 2869618 ~ 2874758 (-)
LOC122328838 LOC107680059,LOC107748448,LOC107565963 other downstream 281815 2769482 ~ 2839047 (-)
LOC122328849 LOC107718007,LOC107687303,LOC107571802,LOC107748430,LOC107680054,LOC107565975 other downstream 322329 2787296 ~ 2798533 (-)
LOC122328836 LOC107566068 other upstream 305902 3434124 ~ 3445964 (-)
tspan2b tspan2b,LOC107709234,LOC107696969,LOC107746340,LOC107566064,LOC107673514,LOC107554202 other upstream 374043 3502265 ~ 3518142 (-)
lad1 LOC107746516,LOC107696941,LOC107559160 other upstream 766744 3894966 ~ 3905892 (-)
LOC122329268 LOC107707377,LOC107673205,LOC107746501,LOC107697018,LOC107601321,LOC107598138,LOC108443130,LOC103026736,LOC106572423 other upstream 1045692 4173914 ~ 4194998 (-)
LOC122329181 LOC107601337,LOC107697001,LOC107723119 other upstream 1699256 4827478 ~ 4834520 (-)

Expression


Co-expression Network