LOC122328866 (LOC107709226,LOC107576631)


Basic Information

Item Value
gene id LOC122328866
gene name LOC107709226,LOC107576631
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 2983338 ~ 2989016 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224922.1
aaaaatgattgattgattgattgattgattggtgtAAACCACCCCACTGGACGCGCTCTCCGCTGGGATGTCACTTCAGTTCATATGCGAGTCAAGGCAgttgagcgaatacttttggcaatgtAGTGTATCATTGCCTTATTCTACGTGACCTtatacatccctaatcctagccgatacctaaacttaacaactactgcGCTAACTATTAATCAGCAGCAAATTAGAAACGTATTGAGTGAAAATCGTAGTTAATAGAAAATAAGTGTTCCCTGTTCGAAAGTGTTACTTTATTTTCGAAAGTAGTCCAGCCCATCAACAGATTATTATGGATAAGATCTAGATAAGAAGTGAATAAGATAAGAGACAGATGAGAGCTCTTTGatcacagtttattttaagatcGCATTCTCAACAATAACTAaaattaactatgacttttctctTGGTgcttatttattgtgtattaagGTAGCTTGAGAATGGGGTGGGATttagggatctaaaatatggtcatgcagactAAGGCATTAATAAGCTTTATAAGTAGTACGTGCTAGTAATGGCGAAAATCGGTCCTTAAAATCTTACCATAAACGTTTCCAGTGGCAAAATTAAGCCGCCATATATCTGTTGGATTCCAGGTATTTGCTCTTCTGTTTTATCTTATATGTGATATAATTAGCAACGGAActtttatgatgttattttaaGAATCTgaattaagaaacatttttcttcCTTTGTTTGTCGTGCCTTGAGCCATCAGATTTGCCATTGTCATTAAATCCTAAAATGAATGCGATTAATTCTCAAAAAGCTATGAACGTTAACCTTAGCTTTGTAACATCTGTATCTGTTTTTActgtaggggaaaaaaaaacagtattacacttagtatttttagaattatgcacgttttgatatttttccaaTAACTCGTATCTAATTGGTTTAAATCAgtcttccaattacaaaaatTCTCTTTGATTGTGTGATTTggtttaacaaaatgtttttggctTGACCTATACGTGTATTTGTGTCGTACAAAACATATGTTCTTACGGCTGATCTACAATACATCTATTACAAACTTTATTTACAGAGATTGCAACTTTTCAGGTTGTGTTTAGTCAGGAATGGGAAGTGAGGTTTGTTTCCTTGGAAGGCTATAAATGGATTCATAAAATATCTGACCTATGAAAGTTATGCTATAGGTGAACTCACAAAGTAAACACAGAAGGCCCATTTATTTTGAATCTATGCGCGAGATAATGCATGTATCAATCATTGTTTTCAGATACCAGGACCTGTTCGAGTAGTTTTCGTTTTCTGATTGGTTTAAGAATGTCTGGACTCTTGCCAGACTCCTTTGTGCATCGTTCCTTAGAAAGTCTTTCAGACAATCGCGTGCTGtagctgtaaaaatgtaatctgattCAATGGGTTTCCAGAGAAATGTCGTCAAATCGTCCTCCTTTGGTTTGTATTTAAAGGAGAAACACAGCCAGTTTCACATGCACTTGAAAGCACAGCTAAAGCCAGAGAAAAGGAAGCTCCTGAGTATGAATCTCCTCTCACTGCTTAAAATGAAGACCGTGGTTGTTTTCTTTGTTGCAAGCGTCTGCATTCAAAGCGCAACCCCATCAAAACTCGACGTACGCAAAAAGCGAGCGTGGATTGTGGATTCGCTGACCATGGAAGAAGAGCACGCCGGTCCTTTCCCATACAAACTGGGAGATTTAAACATCGAGAAGAAGGTTTTGGAAGAATACTCCATTCACGGCCAGGGCATCGACAAAGATCCCAAAGGAATCCTGTCTGTCAGCAGAAACGGATCCGTTTACGCTCATGGAAAAGTTGACTTTGAGGAGTACCGCAAACTGAGAATCACGCTTTCTAAAAAACAGACAGCAGTCGCTGTGGATATCGATGTCCTGGATATCAACGACCACGCTCCTGTTTTTAATCGGGACCTGTATGAGATCGCAGCAGATGAATCAACACAACCAGGTAAGGCTCTGGTCACAGTGCTGGCAGCCGACAACGACCAGCCAGGAACAGCCAACGCTCACTTCACGCTGAGGATCTCCTCGGTGTCTCCTTCTCCCTCCGGCGCTGACTTCTTCATTCAGCAGAGAAAAGGAGAGCAGACGGGAAGCATTTCTTTCAAGGGGTACCTTGATTATGAGAAGACCCAAAAATACACTATTCTGGTAGAAGCAAAGGATCATGGGGAGAAGATACAGCTCTCCAGCACAAGCACAGTAATATTGAATATCATGGCCAAACACGGCTATCCATCAGAGTTCACTAGGAAAACAAAACACGCCAGTGACTCTTCAGCATTGAAGAAGATGAAACAAGTGGGTGTACTGGAGTCTGGACCGATGCTGGAGACCAACAAACTGTCCATGTGTCTGTCTGAGGAGACGACTGACGTTACGGCTCTCAACCCAGCCCTGTACAGCCCACCGTTACGCTTCCAGCTGATTGGAGATGTGCAGGGCAAGTGGAGGCTTCGGTCCGACTACGGCGCGTCCGTGAGGCTGATCAAAGATGGCGGCGTACATGCAGGCCATCATCGGCTCACTTTTAAGATCTCTGACAGCCAGGGCCAGAGTTCGGTCCAGACGCTCTCGCTGCTCGTGTGCGACTGCGACGCTTCTGCAGACTGCAAGGACCCGGCAGCAAAGATGAACGTCGCTGGCGTCGCTCTCACGATCCTCGGCATCCCGGGGCTGCTGGGTAAGAGCGGGGGTTTCACGTCCAGCGTGGTCCTGGCCTTCTCAGTCACTTTGTTCATCCAAACATTATACTCTGCAAGCTGGATTATGCTACTGGAGGATGCATTTTACAATTcgaataataaatactaaattgtGTTTCAATCAGTGCGCACTACTGTCCAAAATAtggctcagtgtgtgtgtgtgtgtttttttaagaaatcaggCCAAAATAACAGATTAATGAGCATGTGACACTGATGCTATTTCACGAGATTACCGTTTTTActctaataatatattttactgcaatgtatctgatcaaataaatgcagccctggtgaGCTCAAGAGACATCTCTTGAAGCGATGGCGAAGTCGTGTGtctaatgagtgtgtgtgtttgtctgtgtgtagGTATCCTGTTGATGGTGTGTTGTAAGATCAGAGCAAAGCAGTCTGAGAAGCGCAACAAGCTGTTAGTGGAGGCATCAGAGCAATTTCTTAGCCCTGACACCATCGAAGCTCGCTGAACTTGATCGCGCCGTGTTTTCATGATCATCCAGCACCAATTTCCTCCATTTTGGCAGcatttgttatataaatatccCTATTTCTGCCGTAAATGATGCGGCGTTAAACCCAGAGCCTCTTTCGTCCAGGGATGAACTCCTGGAGCCACAGCTGAAGCACAAACGCCACCAGTCTCCAGAACGCGccctgaaaaaaatacagaggaTTGAACTGATTTTGATGAACTCAAACGGCAGACTGCTTGTTTTTACGCTGCGATATTAAAAGGAAGGAACGCTTTGGCGGTTTTAAATGCGCATGCGTACAACGCGAACGACTCTGGGAATAGATTGATGATTAATCCGCCTTCACGTGCGTGGTGTGAATGAATACTTGAGTGCCATATGATTATATCAGCTCATGCAGATACGAAATCATTCATAAACCACCCTCACGGCTGAGCAGGTGATACTGTACAGAGTTCCGCCTGCACtggtatatttatattgtttacatatgtgaAGGAATCACTTTTTGTAAGCGAGTTCGTGTTTGGGGATGATtcgtttttattgttaattgtaatttattaataaaagga
>XM_043224924.1
aaatgattgattgattgattgattgattggtgtAAACCACCCCACTGGACGCGCTCTCCGCTGGGATGTCACTTCAGTTCATATGCGAGTCAAGGCAgttgagcgaatacttttggcaatgtAGTGTATCATTGCCTTATTCTACGTGACCTtatacatccctaatcctagccgatacctaaacttaacaactactgcGCTAACTATTAATCAGCAGCAAATTAGAAACGTATTGAGTGAAAATCGTAGTTAATAGAAAATAAGTGTTCCCTGTTCGAAAGTGTTACTTTATTTTCGAAAGTAGTCCAGCCCATCAACAGATTATTATGGATAAGATCTAGATAAGAAGTGAATAAGATAAGAGACAGATGAGAGCTCTTTGatcacagtttattttaagatcGCATTCTCAACAATAACTAaaattaactatgacttttctctTGGTgcttatttattgtgtattaagGTAGCTTGAGAATGGGGTGGGATttagggatctaaaatatggtcatgcagactAAGGCATTAATAAGCTTTATAAGTAGTACGTGCTAGTAATGGCGAAAATCGGTCCTTAAAATCTTACCATAAACGTTTCCAGTGGCAAAATTAAGCCGCCATATATCTGTTGGATTCCAGGTATTTGCTCTTCTGTTTTATCTTATATGTGATATAATTAGCAACGGAActtttatgatgttattttaaGAATCTgaattaagaaacatttttcttcCTTTGTTTGTCGTGCCTTGAGCCATCAGATTTGCCATTGTCATTAAATCCTAAAATGAATGCGATTAATTCTCAAAAAGCTATGAACGTTAACCTTAGCTTTGTAACATCTGTATCTGTTTTTActgtaggggaaaaaaaaacagtattacacttagtatttttagaattatgcacgttttgatatttttccaaTAACTCGTATCTAATTGGTTTAAATCAgtcttccaattacaaaaatTCTCTTTGATTGTGTGATTTggtttaacaaaatgtttttggctTGACCTATACGTGTATTTGTGTCGTACAAAACATATGTTCTTACGGCTGATCTACAATACATCTATTACAAACTTTATTTACAGAGATTGCAACTTTTCAGGTTGTGTTTAGTCAGGAATGGGAAGTGAGGTTTGTTTCCTTGGAAGGCTATAAATGGATTCATAAAATATCTGACCTATGAAAGTTATGCTATAGGTGAACTCACAAAGTAAACACAGAAGGCCCATTTATTTTGAATCTATGCGCGAGATAATGCATGTATCAATCATTGTTTTCAGATACCAGGACCTGTTCGAGTAGTTTTCGTTTTCTGATTGGTTTAAGAATGTCTGGACTCTTGCCAGACTCCTTTGTGCATCGTTCCTTAGAAAGTCTTTCAGACAATCGCGTGCTGtagctgtaaaaatgtaatctgattCAATGGGTTTCCAGAGAAATGTCGTCAAATCGTCCTCCTTTGGTTTGTATTTAAAGGAGAAACACAGCCAGTTTCACATGCACTTGAAAGCACAGCTAAAGCCAGAGAAAAGGAAGCTCCTGAGTATGAATCTCCTCTCACTGCTTAAAATGAAGACCGTGGTTGTTTTCTTTGTTGCAAGCGTCTGCATTCAAAGCGCAACCCCATCAAAACTCGACGTACGCAAAAAGCGAGCGTGGATTGTGGATTCGCTGACCATGGAAGAAGAGCACGCCGGTCCTTTCCCATACAAACTGGGAGATTTAAACATCGAGAAGAAGGTTTTGGAAGAATACTCCATTCACGGCCAGGGCATCGACAAAGATCCCAAAGGAATCCTGTCTGTCAGCAGAAACGGATCCGTTTACGCTCATGGAAAAGTTGACTTTGAGGAGTACCGCAAACTGAGAATCACGCTTTCTAAAAAACAGACAGCAGTCGCTGTGGATATCGATGTCCTGGATATCAACGACCACGCTCCTGTTTTTAATCGGGACCTGTATGAGATCGCAGCAGATGAATCAACACAACCAGGTAAGGCTCTGGTCACAGTGCTGGCAGCCGACAACGACCAGCCAGGAACAGCCAACGCTCACTTCACGCTGAGGATCTCCTCGGTGTCTCCTTCTCCCTCCGGCGCTGACTTCTTCATTCAGCAGAGAAAAGGAGAGCAGACGGGAAGCATTTCTTTCAAGGGGTACCTTGATTATGAGAAGACCCAAAAATACACTATTCTGGTAGAAGCAAAGGATCATGGGGAGAAGATACAGCTCTCCAGCACAAGCACAGTAATATTGAATATCATGGCCAAACACGGCTATCCATCAGAGTTCACTAGGAAAACAAAACACGCCAGTGACTCTTCAGCATTGAAGAAGATGAAACAAGTGGGTGTACTGGAGTCTGGACCGATGCTGGAGACCAACAAACTGTCCATGTGTCTGTCTGAGGAGACGACTGACGTTACGGCTCTCAACCCAGCCCTGTACAGCCCACCGTTACGCTTCCAGCTGATTGGAGATGTGCAGGGCAAGTGGAGGCTTCGGTCCGACTACGGCGCGTCCGTGAGGCTGATCAAAGATGGCGGCGTACATGCAGGCCATCATCGGCTCACTTTTAAGATCTCTGACAGCCAGGGCCAGAGTTCGGTCCAGACGCTCTCGCTGCTCGTGTGCGACTGCGACGCTTCTGCAGACTGCAAGGACCCGGCAGCAAAGATGAACGTCGCTGGCGTCGCTCTCACGATCCTCGGCATCCCGGGGCTGCTGGGTATCCTGTTGATGGTGTGTTGTAAGATCAGAGCAAAGCAGTCTGAGAAGCGCAACAAGCTGTTAGTGGAGGCATCAGAGCAATTTCTTAGCCCTGACACCATCGAAGCTCGCTGAACTTGATCGCGCCGTGTTTTCATGATCATCCAGCACCAATTTCCTCCATTTTGGCAGcatttgttatataaatatccCTATTTCTGCCGTAAATGATGCGGCGTTAAACCCAGAGCCTCTTTCGTCCAGGGATGAACTCCTGGAGCCACAGCTGAAGCACAAACGCCACCAGTCTCCAGAACGCGccctgaaaaaaatacagaggaTTGAACTGATTTTGATGAACTCAAACGGCAGACTGCTTGTTTTTACGCTGCGATATTAAAAGGAAGGAACGCTTTGGCGGTTTTAAATGCGCATGCGTACAACGCGAACGACTCTGGGAATAGATTGATGATTAATCCGCCTTCACGTGCGTGGTGTGAATGAATACTTGAGTGCCATATGATTATATCAGCTCATGCAGATACGAAATCATTCATAAACCACCCTCACGGCTGAGCAGGTGATACTGTACAGAGTTCCGCCTGCACtggtatatttatattgtttacatatgtgaAGGAATCACTTTTTGTAAGCGAGTTCGTGTTTGGGGATGATtcgtttttattgttaattgtaatttattaataaaagga

Function

NR:

description
PREDICTED: desmocollin-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224922.1 True 3845 mRNA 0.42 8 2983338 2989016
XM_043224924.1 False 3446 mRNA 0.43 9 2983340 2989016

Neighbor

gene id symbol gene type direction distance location
LOC122328851 LOC107687290,LOC107709248,LOC107558915 coding upstream 6492 2965600 ~ 2976846 (+)
LOC122329171 NA coding upstream 26421 2955109 ~ 2956917 (+)
LOC122328870 NA coding upstream 31710 2948990 ~ 2951628 (+)
LOC122329170 NA coding upstream 35483 2946012 ~ 2947855 (+)
LOC122329167 NA coding upstream 44620 2923380 ~ 2938718 (+)
rhoac rhoac,LOC107687289,LOC107558917,LOC105890655,LOC108438067,LOC102777028,LOC106572042 coding downstream 499 2989515 ~ 2993355 (+)
twist3 twist3,LOC107696972,LOC107748453,LOC107554215,LOC107576512,LOC107704622,LOC107709223 coding downstream 144515 3133531 ~ 3137978 (+)
LOC122328845 LOC107554212,LOC107697038,LOC107571185,LOC107673381,LOC100001805,LOC107752455 coding downstream 330425 3319441 ~ 3352334 (+)
taf11 taf11,LOC107554211,LOC107566076,LOC107696971 coding downstream 442307 3431323 ~ 3433604 (+)
ap4b1 ap4b1,LOC107697033,LOC107672998,LOC107566065 coding downstream 485000 3474016 ~ 3482861 (+)
G154425 NA non-coding upstream 26203 2947774 ~ 2957135 (+)
LOC122328888 NA non-coding upstream 44257 2938721 ~ 2939081 (+)
G154369 NA non-coding upstream 131890 2851024 ~ 2851448 (+)
G154368 NA non-coding upstream 138183 2844852 ~ 2845155 (+)
LOC122328886 LOC107748448,LOC107680059,LOC107565963 non-coding upstream 140316 2835863 ~ 2843022 (+)
LOC122328882 NA non-coding downstream 22165 3011181 ~ 3021971 (+)
LOC122328883 NA non-coding downstream 60382 3049398 ~ 3051276 (+)
G154487 tmem106c,LOC107704621 non-coding downstream 123506 3112522 ~ 3113171 (+)
G154517 NA non-coding downstream 217466 3206482 ~ 3206688 (+)
G154561 NA non-coding downstream 253199 3242215 ~ 3242722 (+)
G154424 NA other upstream 26613 2923382 ~ 2956725 (+)
LOC122329169 NA other upstream 39532 2925308 ~ 2943806 (+)
prdm5 prdm5,LOC107698519,LOC107669703 other upstream 626611 2312722 ~ 2356727 (+)
LOC122328869 LOC107723021,LOC107694620,LOC107577481 other upstream 850505 2129998 ~ 2132833 (+)
LOC122328880 LOC107723010,LOC107683284,LOC107694619 other upstream 911939 2068668 ~ 2071399 (+)
rbm10 LOC107709225,LOC107687301,LOC107704624,LOC107748436 other downstream 6153 2995169 ~ 3010017 (+)
mitfb LOC107704626,LOC107709243,LOC107748437,LOC108438070,LOC107687304,LOC107558923,LOC107709232 other downstream 71493 3060509 ~ 3097035 (+)
ube2t ube2t,LOC107746510,LOC107707375,LOC107673550 other downstream 705636 3694652 ~ 3697022 (+)
LOC122328459 g6pd,LOC107723128,LOC107697003,LOC107594489 other downstream 1828349 4817365 ~ 4835484 (+)
si:ch211-220i18.4 LOC107551506,LOC107666586,LOC107559855,LOC107681367,LOC107705652,LOC108275527,LOC107100285 other downstream 3603586 6592602 ~ 6598532 (+)

Expression


Co-expression Network