LOC122328870


Basic Information

Item Value
gene id LOC122328870
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 2948990 ~ 2951628 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224928.1
CATCtaacttttttggttttgtgtgAATTGCTGTCTGCGTCTAACACGCTActttggtgctttttttttttttccacagagtTCACTGTAATCACAGGTCAGGATGAGCACTCGAGCGTACTGCTCGCTCATTGCAGTTTTATTGTGTCTCTGCAGATGTTTGAGCATAACCGATGCTACTCGAGGACGCTCCAAAGTGACTGGTTTCTGTCCGGCGAGGCTCACGGTTGTACCGTCCCGTCGAGGATGTTCTTCTGACAGAGACTGCTCCAGAGAACACATATGCTGTCGTTTTGATCGGGGACCTGTGTGTGTGCCGCCTGTTTCCACAAAACCAGGAGAGTGTCCACCCGCCAGAATGTGTGGAAGATCATGTACCAGCTCCTGTGAAAGTGACTCTTGCTGTCCAGGCAACGAGAAGTGCTGCAGCAATGGATGTGGACGTCACTGTACAGATCCATATATAGTGAAACCGGGTCAATGTCCCAGACCAACGAGGACTCGAGTGTGTGATGAAAACTGTTTCCATGATGGTCAATGTCCTGCCAGACAGAAGTGTTGCCCAACGACCTGTGGCCGTTCATGCAGTAAACCATTgggccaaggaggccagggcggccagggccaaggaggccagggcggccagggccaaggaggccagggcggccagggccaaggaggccagggcggccagggccaaggaggccagggcggccagggccaaggaggaggccagggccaaggaggccagggcggccagggccaaggaggccagggcGGCCAGGGCGGCCAGGGCGGCCAGGGcggccagggccaaggaggccagggccaaggaggccagggccaaggaggccagggcCAGGGAGGCCAGGGCCAGGGaggccagggccaaggaggccagggcgaaggcggccagggccaaggaggccagggcggccagggccaaggaggccaggACCAAGGCGGCCAGggccagggccaaggaggccagggccagggccaaggaggccagggccagggccaaggagGGGGTCAGGGTCagggccaaggaggccagggccaaggaggccagggTCAGGGCCAAGGGGGCCAGGGTCAGGGCCAAGGGGGTCAGGGTCAGGGCCAAGGGGGTCAGGGTCAGGGCCAAGGGGGTCAGggccagggccaaggaggccagggccaaggaggccagggccaaggaggccagggccaaggaggccagggTGGCAGCCAGGGCCAGGGGGGTGGACAGGGTGGCAGCCGGGGAGGTAAATAAGTCTTTTATTGTTCTGAGGTTAGGGAAGTTGTGAAATGTGTCCAGGTATTTGGTCCAGCTAGTGATTCTGGGCATTTTTTGCAATGCACTGGAGATCTTTTCATGTGGAAATCTATTCCCATTTCCTCCATTCTGTAAACCCACCCCTTCATTCAAATAAAGATGATtgcttga

Function

GO:

id name namespace
GO:0008406 gonad development biological_process
GO:0045137 development of primary sexual characteristics biological_process
GO:0007548 sex differentiation biological_process
GO:0061458 reproductive system development biological_process
GO:0048608 reproductive structure development biological_process
GO:0061134 peptidase regulator activity molecular_function
GO:0061135 endopeptidase regulator activity molecular_function
GO:0030414 peptidase inhibitor activity molecular_function
GO:0004866 endopeptidase inhibitor activity molecular_function
GO:0030234 enzyme regulator activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224928.1 True 1450 mRNA 0.60 6 2948990 2951628

Neighbor

gene id symbol gene type direction distance location
LOC122329170 NA coding upstream 1135 2946012 ~ 2947855 (+)
LOC122329167 NA coding upstream 10272 2923380 ~ 2938718 (+)
LOC122328848 LOC107709248,LOC107687290,LOC107558915 coding upstream 31442 2901814 ~ 2917548 (+)
cdh26.1 LOC107687291,LOC107709249,LOC107748449,LOC107565965,LOC107558905 coding upstream 49200 2885732 ~ 2899790 (+)
zgc:113423 LOC107687294,LOC107558912,LOC107717998 coding upstream 79110 2863843 ~ 2869880 (+)
LOC122329171 NA coding downstream 3481 2955109 ~ 2956917 (+)
LOC122328851 LOC107687290,LOC107709248,LOC107558915 coding downstream 13972 2965600 ~ 2976846 (+)
LOC122328866 LOC107709226,LOC107576631 coding downstream 31710 2983338 ~ 2989016 (+)
rhoac rhoac,LOC107687289,LOC107558917,LOC105890655,LOC108438067,LOC102777028,LOC106572042 coding downstream 37887 2989515 ~ 2993355 (+)
twist3 twist3,LOC107696972,LOC107748453,LOC107554215,LOC107576512,LOC107704622,LOC107709223 coding downstream 181903 3133531 ~ 3137978 (+)
LOC122328888 NA non-coding upstream 9909 2938721 ~ 2939081 (+)
G154369 NA non-coding upstream 97542 2851024 ~ 2851448 (+)
G154368 NA non-coding upstream 103835 2844852 ~ 2845155 (+)
LOC122328886 LOC107748448,LOC107680059,LOC107565963 non-coding upstream 105968 2835863 ~ 2843022 (+)
G154365 NA non-coding upstream 151153 2797127 ~ 2797837 (+)
LOC122328882 NA non-coding downstream 59553 3011181 ~ 3021971 (+)
LOC122328883 NA non-coding downstream 97770 3049398 ~ 3051276 (+)
G154487 tmem106c,LOC107704621 non-coding downstream 160894 3112522 ~ 3113171 (+)
G154517 NA non-coding downstream 254854 3206482 ~ 3206688 (+)
G154561 NA non-coding downstream 290587 3242215 ~ 3242722 (+)
LOC122329169 NA other upstream 5184 2925308 ~ 2943806 (+)
prdm5 prdm5,LOC107698519,LOC107669703 other upstream 592263 2312722 ~ 2356727 (+)
LOC122328869 LOC107723021,LOC107694620,LOC107577481 other upstream 816157 2129998 ~ 2132833 (+)
LOC122328880 LOC107723010,LOC107683284,LOC107694619 other upstream 877591 2068668 ~ 2071399 (+)
snai1b LOC107694621,LOC107723015,LOC107549169,LOC107558792,LOC107738552,LOC107669687 other upstream 895015 2050032 ~ 2053975 (+)
rbm10 LOC107709225,LOC107687301,LOC107704624,LOC107748436 other downstream 43541 2995169 ~ 3010017 (+)
mitfb LOC107704626,LOC107709243,LOC107748437,LOC108438070,LOC107687304,LOC107558923,LOC107709232 other downstream 108881 3060509 ~ 3097035 (+)
ube2t ube2t,LOC107746510,LOC107707375,LOC107673550 other downstream 743024 3694652 ~ 3697022 (+)
LOC122328459 g6pd,LOC107723128,LOC107697003,LOC107594489 other downstream 1865737 4817365 ~ 4835484 (+)
si:ch211-220i18.4 LOC107551506,LOC107666586,LOC107559855,LOC107681367,LOC107705652,LOC108275527,LOC107100285 other downstream 3640974 6592602 ~ 6598532 (+)

Expression


Co-expression Network