tmem106c (tmem106c,LOC107697039,LOC107704621,LOC107558924)


Basic Information

Item Value
gene id tmem106c
gene name tmem106c,LOC107697039,LOC107704621,LOC107558924
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 3107007 ~ 3113429 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224932.1
GCAAAAAGTGTTCCCTGTCGCGCTCCGGAGCGGCGGATGGCGGTAGAGAGGAACCCCGGCCCCAGAGCGGAGACCGAGAGAGACGTGAACACAAACACCGACGCCCCGCGGACCCGGAGCACTCCAACGCGCGGCGTCTCAGCGGCTCGAAGGTTTGAGGCTGGAGTCGGGCTGAGCTGCTCATGGGTGCCTCTGTGTGCCGGCACGGCCGCCGGATGCTGTCCCGTCACAGCAGGCCCGCTCACAAGGGCTCTCTGATGGGTGGGGATGACTCTCTGGACGGCCTGGACAGACAGGAGGACATCGCTCAGTTTCCCTACGTGGAGTTCACGGGCCGAGACAGCATCACCTGTGCTACCTGCCAAGGGTCCGGACGCATCCCATCAGgGCAGATGAACGAGTTGGTTGCTCTGATCCCCTACAGCGATCAAAGGTTACAGCCGAGGAGAACGAAGCTGTACGTGGTGCTGTCAGTGATTTTGTGCCTGCTGGCGTCTGTTTTGGTGGCGTTCTTCCTGTTTCCGCGTCCTGTGCTGGTTGTAGACGATGGCATCCGCTCTGTGACTGTGCATTTTGACCGTAACAACAGCAAAGTGATCATCAACATGACGAGCTCTCTGAACGTCACCAACTCTAATTTCTTCACGGTGTGGGTGGACAGCGTGAGCTGCCAGGTGCTCTACATGAAGACAGTCATCGGATCTCAACAGCTTGACAATGTCATCCACATTCAACCTCTCAGCCAGAGACAGGTCAACTTCACTGTCAGCATGGAGATCGGAGGAAGTCTCTCTTACGTTTATGCCTTTTGCACCATGGCAAGCATCAAGGTCCACAACATTGTGGTGTTTATGCAGACCTCTGTGAAAACCTCCTACATGTTGCGGGCGGCACAGAACACGCTGGAAGCGTACCGCTACATCGACTGCGGCGCTAACTCCACCGTCCACCAGCCCTCAGGACTGGTCTGGTCTAAACCTCACTTCCCTCAGGATGGGAAAGCGCTCGGGTGAAGACGGTTTGATTCTCCGGAGCAGCTCAGTTTCTTCCGTTCTGCCTCCGGATTTTGTGCCGCACTGAAACCGAACCCACTCAACAGAGCAGCTGTGATGTAAGAACCGATCCCTCAGCGCTGATAATGATGGTGCGATAACTACTAAATGAGAAACGGAGCTCTCTTCTTAAAGCCTTTGCCATCTGAAGAGCTCTAGCGTTAATCTGCAGCCTACAATAACGGgtgttatattattttgcattgatTGGTAAAAAAGGagatttaaataattgatttgtCAATGACGAGGTTCTGTGGGATGTACTTTAAGTGCAGTGCCAAAGATTTCAAGAGGTTTCTGCAATTGGGTATTGAAGTGACACTCTCGGCAAAATCAGCCACAAagatgaattataaaataaaaatgacgtGCTTAGGCTAAATTCAGCATTTTGTTGTGTTAAGGGAGCTGTTACTAAACAGTTAAGAGTATCGCTTTGCTCCTGTGATGCCATGAAAActcaatgttttgtttacactCAAACTTTAGGGCTTTCACCAAGTTTTTAGACCAAAGTATTAGACACTCTGTAACTGAGAATCAGCTTACTGGCGTAGTCCctgaaaaaaaggtacaaaagctatttttttggttattatcttttcaaaaggtacagaTATAGGGACtgatatgtatatgttttatgctaatatataaCTTTAAAGTACCAATATTACATGTAAAAGTGGTGCAAAGGTGTACTTtttggaagagaaaaaaagcccACCACAGTAACagcttttgtatcttttttttgtataggtTTAAGAAGGGCGTTTGTTTCTACCTGAATTTGCACATTTGGataatttattgctatttttttatatttaatctccTTATCGTGCCTTGAGATTTGATTGTGTTTTTCATTGTATaaagatgataataaaaatgcttaaaagca

Function

symbol description
tmem106c Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM106C (transmembrane protein 106C).

NR:

description
transmembrane protein 106C

GO: NA

KEGG:

id description
K25050 TMEM106C; transmembrane protein 106C

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224932.1 True 1962 mRNA 0.47 8 3107007 3113429

Neighbor

gene id symbol gene type direction distance location
LOC122328874 LOC107704620,LOC107748451 coding downstream 67 3102068 ~ 3106940 (-)
LOC122328867 LOC107558923,LOC107687304,LOC107709232,LOC107748446 coding downstream 7119 3095063 ~ 3099888 (-)
frmd4bb frmd4bb,LOC107558919,LOC107687288,LOC107709245,LOC107704625,LOC107748434 coding downstream 44935 3014616 ~ 3062072 (-)
LOC122329166 LOC107571805,LOC107718002,LOC107687299,LOC107748429,LOC107565964,LOC107680061 coding downstream 347885 2730822 ~ 2759122 (-)
LOC122329165 LOC107571805,LOC107687299,LOC107565964,LOC107718002,LOC107748429,LOC107680061 coding downstream 377511 2726830 ~ 2729496 (-)
LOC122328875 LOC107709230,LOC107558910,LOC107696973,LOC107704617,LOC107554205,LOC107748447 coding upstream 1263 3114692 ~ 3120743 (-)
LOC122328862 LOC107709224,LOC107558908,LOC107704618,LOC107696950 coding upstream 7433 3120862 ~ 3128222 (-)
hdac7a LOC107704627,LOC107709222,LOC107752451 coding upstream 28854 3142283 ~ 3206411 (-)
LOC122329174 NA coding upstream 174694 3288123 ~ 3298955 (-)
LOC122328834 anks1a coding upstream 239532 3352961 ~ 3430053 (-)
G154525 NA non-coding downstream 93826 3011419 ~ 3013181 (-)
G154519 NA non-coding downstream 97529 3006483 ~ 3009478 (-)
G154520 LOC107709225,LOC107565972 non-coding downstream 109043 2996765 ~ 2997964 (-)
G154443 NA non-coding downstream 156349 2925204 ~ 2950658 (-)
G154444 NA non-coding downstream 174770 2925010 ~ 2932237 (-)
G154663 NA non-coding upstream 518930 3632359 ~ 3633333 (-)
G154671 NA non-coding upstream 541857 3655286 ~ 3655596 (-)
G154672 NA non-coding upstream 542859 3656288 ~ 3656543 (-)
G154684 LOC107746508,LOC107696966,LOC107559163 non-coding upstream 559250 3672679 ~ 3673581 (-)
G154687 LOC107559166,LOC107559158,LOC107746523,LOC107696944,LOC107696945 non-coding upstream 579508 3692937 ~ 3693265 (-)
G154446 NA other downstream 149735 2925048 ~ 2957272 (-)
G154445 NA other downstream 155379 2925305 ~ 2951628 (-)
si:zfos-905g2.1 si:zfos-905g2.1 other downstream 232249 2869618 ~ 2874758 (-)
LOC122328838 LOC107680059,LOC107748448,LOC107565963 other downstream 267960 2769482 ~ 2839047 (-)
LOC122328849 LOC107718007,LOC107687303,LOC107571802,LOC107748430,LOC107680054,LOC107565975 other downstream 308474 2787296 ~ 2798533 (-)
LOC122328836 LOC107566068 other upstream 320695 3434124 ~ 3445964 (-)
tspan2b tspan2b,LOC107709234,LOC107696969,LOC107746340,LOC107566064,LOC107673514,LOC107554202 other upstream 388836 3502265 ~ 3518142 (-)
lad1 LOC107746516,LOC107696941,LOC107559160 other upstream 781537 3894966 ~ 3905892 (-)
LOC122329268 LOC107707377,LOC107673205,LOC107746501,LOC107697018,LOC107601321,LOC107598138,LOC108443130,LOC103026736,LOC106572423 other upstream 1060485 4173914 ~ 4194998 (-)
LOC122329181 LOC107601337,LOC107697001,LOC107723119 other upstream 1714049 4827478 ~ 4834520 (-)

Expression


Co-expression Network