taf11 (taf11,LOC107554211,LOC107566076,LOC107696971)


Basic Information

Item Value
gene id taf11
gene name taf11,LOC107554211,LOC107566076,LOC107696971
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 3431323 ~ 3433604 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224936.1
ATTAATCCGTGGAcgtggactcttattttgaagcgGACCGGAAGTTGTTTGTACCGAGTCTGAATTCCGTCTGGAGACGGGTATTTTGAGGAagatacttttttatttgactCCCTGCTCTTCTTAAGCGCTGTTTTCTACGCGGTTGTCGGTCTGAGCCCGAGCATGGCAGACCCGGCCCGTGTGAAACCTGACGCAGGGTTCAGAGAAGCAAGCGGGCCCACAGAGAGAGCCAAACCGAGCGAGGGGCCCGGGGACGCTCCGGGGGCCGGCGGTAAAGCCTCTGAACCCGCTGCTGTCCAGGCCGCTGCCAGAGAGGAGGGCAAAGCCAGGTCCGCAGAAGATGCTGCCGCCGCCGCCGGTGAGGAAGACGAAGAGGGATCTTCGTCACTTCATCCTCCTGCTGCTAAAAAACTGAAAGTGGAGCACGACAAGAAGAAGGAGAAACGCCATAAAGTTGATGAAGATGAAATACAAAAGATGCAAGTTTTAGTGTCCTCGTTCTCTGAAGAGCAGCTGAATCGCTACGAGATGTACCGACGCGCCGCTTTCCCAAAGGCAGCCATTAAAAGACTGATTCAGTCCATCACAGGATCCTCCGTCTCTCAGAACGTGGTCATCGCCATGTCAGGAATTGCCAAGGTGTTTGCCGGGGAGATTGTTGAGGAAGCTCTGGATGTGTGCGAGAAGTGGGGAGACACGCCTCCTCTGCAGCCCAAACACATGAGAGAAGCCGTCCGGAGACTGAAGAGCCGAGAGCAAATCCCCAACACCAAACACAAAAAGATCATCTTCCACTGAGCTCCAGGGCCGCTTGTGACTTCATTCTGTTTCAAAGGACTCTGGGAGTGTTTTTGTGGGGACGCCGAATGGACGCAGACATCTTTTTTCAGATATCTGTTGGGAACGCGCTTTTTGTTATCTGTCTCTGGTTTTATCCACAGTCTGGagcatgtgacaaaaaaaatcctgttaatGACTTTTAGGATGATAAATATTGTACTATTCCTAGCTGTCGCTCGAAAGTAAGTATACCATTGAAATGtctgttgatttgttttttaatctgttttattttgggaGTATGCGTGCAGTGATGttttgtgtattatataaaaatgccaTCTTTGGAGTTGAggcagaaaaaatgaaaaaaataaatattttggtgaaa

Function

symbol description
taf11 Predicted to enable transcription coactivator activity. Predicted to be involved in RNA polymerase II preinitiation complex assembly. Predicted to act upstream of or within transcription initiation from RNA polymerase II promoter. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIID complex. Orthologous to several human genes including TAF11 (TATA-box binding protein associated factor 11).

NR:

description
transcription initiation factor TFIID subunit 11 isoform X2

GO:

id name namespace
GO:0006367 transcription initiation from RNA polymerase II promoter biological_process
GO:0006413 translational initiation biological_process
GO:0005634 nucleus cellular_component
GO:0003743 translation initiation factor activity molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K03135 TAF11; transcription initiation factor TFIID subunit 11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224936.1 True 1174 mRNA 0.49 6 3431323 3433604

Neighbor

gene id symbol gene type direction distance location
LOC122328845 LOC107554212,LOC107697038,LOC107571185,LOC107673381,LOC100001805,LOC107752455 coding upstream 78989 3319441 ~ 3352334 (+)
twist3 twist3,LOC107696972,LOC107748453,LOC107554215,LOC107576512,LOC107704622,LOC107709223 coding upstream 293345 3133531 ~ 3137978 (+)
rhoac rhoac,LOC107687289,LOC107558917,LOC105890655,LOC108438067,LOC102777028,LOC106572042 coding upstream 437968 2989515 ~ 2993355 (+)
LOC122328866 LOC107709226,LOC107576631 coding upstream 442307 2983338 ~ 2989016 (+)
LOC122328851 LOC107687290,LOC107709248,LOC107558915 coding upstream 454477 2965600 ~ 2976846 (+)
ap4b1 ap4b1,LOC107697033,LOC107672998,LOC107566065 coding downstream 40412 3474016 ~ 3482861 (+)
zgc:101663 LOC107709235,LOC107697032,LOC107566074,LOC107746337,LOC107554219,LOC107673483 coding downstream 49408 3483012 ~ 3491622 (+)
LOC122328605 LOC107673498,LOC107746338,LOC107709218,LOC107554217,LOC107696970 coding downstream 60533 3494137 ~ 3496896 (+)
slc25a55b zgc:92113,LOC107746330,LOC107554216,LOC107709233,LOC107697031,LOC107673507 coding downstream 63402 3497006 ~ 3500981 (+)
LOC122329307 LOC107697030,LOC107711716,LOC107746331,LOC107673019,LOC100330283,LOC107598116,LOC104931868,LOC103360392 coding downstream 171652 3605256 ~ 3608341 (+)
G154584 NA non-coding upstream 30565 3400009 ~ 3400758 (+)
G154582 NA non-coding upstream 35916 3394923 ~ 3395407 (+)
LOC122328887 NA non-coding upstream 116063 3314508 ~ 3315260 (+)
G154561 NA non-coding upstream 188601 3242215 ~ 3242722 (+)
G154517 NA non-coding upstream 224635 3206482 ~ 3206688 (+)
G154647 NA non-coding downstream 166838 3600442 ~ 3600856 (+)
LOC122329308 NA non-coding downstream 174759 3608363 ~ 3614844 (+)
G154661 NA non-coding downstream 201160 3634764 ~ 3636277 (+)
G154667 NA non-coding downstream 206259 3639863 ~ 3640681 (+)
G154673 NA non-coding downstream 223495 3657099 ~ 3657405 (+)
mitfb LOC107704626,LOC107709243,LOC107748437,LOC108438070,LOC107687304,LOC107558923,LOC107709232 other upstream 334288 3060509 ~ 3097035 (+)
rbm10 LOC107709225,LOC107687301,LOC107704624,LOC107748436 other upstream 421306 2995169 ~ 3010017 (+)
G154424 NA other upstream 474598 2923382 ~ 2956725 (+)
LOC122329169 NA other upstream 487517 2925308 ~ 2943806 (+)
prdm5 prdm5,LOC107698519,LOC107669703 other upstream 1074596 2312722 ~ 2356727 (+)
ube2t ube2t,LOC107746510,LOC107707375,LOC107673550 other downstream 261048 3694652 ~ 3697022 (+)
LOC122328459 g6pd,LOC107723128,LOC107697003,LOC107594489 other downstream 1383761 4817365 ~ 4835484 (+)
si:ch211-220i18.4 LOC107551506,LOC107666586,LOC107559855,LOC107681367,LOC107705652,LOC108275527,LOC107100285 other downstream 3158998 6592602 ~ 6598532 (+)
G155561 NA other downstream 3792390 7225994 ~ 7238919 (+)
tcea2 tcea2,LOC107681409,LOC107551521,LOC107705683,LOC107571665,LOC107666524 other downstream 3864756 7298360 ~ 7305534 (+)

Expression


Co-expression Network