fam3a (fam3a,LOC107673098,LOC107591069,LOC107737523,LOC107593911)


Basic Information

Item Value
gene id fam3a
gene name fam3a,LOC107673098,LOC107591069,LOC107737523,LOC107593911
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 14293872 ~ 14298117 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224952.1
GTGTCATCGGGATTGGTGTATTGGCAACAGATGTACGCTTGTGGAGGACACTGAACAAGGATATCTCGTTATTACGGAGCGCTCTATAAATGTTAGTTTTATTGGATGCTGACTAATTCAGTCGACACTGCTTTTAAGATGACCGTGCTGCGTTGAACGAGATTTAATTTGTCGTGACAGAGTGTTAAAGCACAAGGGGCAATCTGTTTCACGAACCTGCTGCACGGGATTACTGCAGATTTTAGtttgtaCTCCACAAACAGAATCTTATCACATTGGCCACTTCCTGAGCAGATTTTGACATCTGTTGACCATGAGGTTTGCAGTGGCGCTCCGTGCTGTTGCTTTGGTTCTTCTTTTGGGCTTTACCTGGCTTCTAGCAAATTCTATGCTAGGAGGGGATGGGAACTCCTTGATACGGATGCTGTTTAGTGGTGGACAAGAAGAGCCCACTCCAGCAGAACCTCGACCACGCAAGTACAAATGTGGCCTGTCTGCCCCGTGTCCCCCCAAACATCTCGCCTTCCGGCTGACCTCTGGGGCTGCCAACGTCATCGGCCCCAAAATCTGTCTGGAAGATAAAATTCTTGTCAGCAGTGCTAAAAACAATGTTGGCAGGGGGCTCAATATTGCCTTAGTAAATGGGGTTAATGGAGATGTCTTGGAAATAAGAGCATTTGATATGTGGGCAGGAGAGGTTTCAGAGCTGCTGAAGTTTCTTCGTCCTCTCCATGAAGGAACGCTAGTATTTGTTACTTCTTTTGATGACCCGGCCACCAAGTTAAATGATGAGGCTCGGCGGCTGTTTGAAGAGCTGGGGAGCACAGCAGCGAAAGAACTGAGCTTCAGGGATAGCTGGGTGTTTGTTGGAGCCAAAGGAATAGAAAATAAGAGCCCATTTGAACAGcGAATGAAgaacagtaaaagcagtaataaatATGAAGGCTGGCCCGAGTCTCTGGAAATGGACGGCTGCATTCCTCTGCGTGCTCCTTTAGAAACTTAAGGCCTCGTGGGTGCTTTTGAACTGTATGAACACTTCTAACGTGAGGATCAAGAAGCACTATGTACAAGCACAACTCAGCTGCCTAAAGGTTTTACTCATCGGATGGTTTGaagtcaaatttttttttttttttttttttttttccttgtagaGCCGTCTGTTTCTTTTCAAGTCTGCGAAACAAATTGAAGATAGAACTGAAAGTTGTCTCGTCCTGTGGAAGTAGAATTGTTGTGAATGacaaaaggtttgtttttatgaaGGAAAAATACAGACgcacagaatattttttaactatttaatttgtatgtttagaaaggttctatatataaaaaatgtgtaaagttGATGCTGTAAAAAATCAGTGCCTAGCGGTTGTTTTGAAGGATGCcattaatatgcatttgcaTTGAAAGAGATTGTTCTACACGTGTTAAAGAATGTCCAGAGAGTCTATTAAAATTTTTCACCTTTTTCTAA
>XM_043224953.1
GTGTCATCGGGATTGGTGTATTGGCAACAGATGTACGCTTGTGGAGGACACTGAACAAGGATATCTCGTTATTACGGAGCGCTCTATAAATGTTAGTTTTATTGGATGCTGACTAATTCAGTCGACACTGCTTTTAAGATGACCGTGCTGCGTTGAACGAGATTTAATTTGTCGTGACAGAGTGTTAAAGCACAAGGGGCAATCTGTTTCACGAACCTGCTGCACGGGATTACTGCAGATTTTAGtttgtaCTCCACAAACAGAATCTTATCACATTGGCCACTTCCTGAGCAGATTTTGACATCTGTTGACCATGAGGTTTGCAGTGGCGCTCCGTGCTGTTGCTTTGGTTCTTCTTTTGGGCTTTACCTGGCTTCTAGCAAATTCTATGCTAGGAGGGGATGGGAACTCCTTGATACGGATGCTGTTTAGTGGTGGACAAGAAGAGCCCACTCCAGAACCTCGACCACGCAAGTACAAATGTGGCCTGTCTGCCCCGTGTCCCCCCAAACATCTCGCCTTCCGGCTGACCTCTGGGGCTGCCAACGTCATCGGCCCCAAAATCTGTCTGGAAGATAAAATTCTTGTCAGCAGTGCTAAAAACAATGTTGGCAGGGGGCTCAATATTGCCTTAGTAAATGGGGTTAATGGAGATGTCTTGGAAATAAGAGCATTTGATATGTGGGCAGGAGAGGTTTCAGAGCTGCTGAAGTTTCTTCGTCCTCTCCATGAAGGAACGCTAGTATTTGTTACTTCTTTTGATGACCCGGCCACCAAGTTAAATGATGAGGCTCGGCGGCTGTTTGAAGAGCTGGGGAGCACAGCAGCGAAAGAACTGAGCTTCAGGGATAGCTGGGTGTTTGTTGGAGCCAAAGGAATAGAAAATAAGAGCCCATTTGAACAGcGAATGAAgaacagtaaaagcagtaataaatATGAAGGCTGGCCCGAGTCTCTGGAAATGGACGGCTGCATTCCTCTGCGTGCTCCTTTAGAAACTTAAGGCCTCGTGGGTGCTTTTGAACTGTATGAACACTTCTAACGTGAGGATCAAGAAGCACTATGTACAAGCACAACTCAGCTGCCTAAAGGTTTTACTCATCGGATGGTTTGaagtcaaatttttttttttttttttttttttttccttgtagaGCCGTCTGTTTCTTTTCAAGTCTGCGAAACAAATTGAAGATAGAACTGAAAGTTGTCTCGTCCTGTGGAAGTAGAATTGTTGTGAATGacaaaaggtttgtttttatgaaGGAAAAATACAGACgcacagaatattttttaactatttaatttgtatgtttagaaaggttctatatataaaaaatgtgtaaagttGATGCTGTAAAAAATCAGTGCCTAGCGGTTGTTTTGAAGGATGCcattaatatgcatttgcaTTGAAAGAGATTGTTCTACACGTGTTAAAGAATGTCCAGAGAGTCTATTAAAATTTTTCACCTTTTTCTAA

Function

symbol description
fam3a Predicted to act upstream of or within negative regulation of gluconeogenesis and regulation of lipid biosynthetic process. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Orthologous to human FAM3A (FAM3 metabolism regulating signaling molecule A).

NR:

description
PREDICTED: protein FAM3A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224952.1 True 1486 mRNA 0.43 10 14293872 14298117
XM_043224953.1 False 1483 mRNA 0.42 10 14293872 14298117

Neighbor

gene id symbol gene type direction distance location
arhgap4a arhgap4a,LOC107737525,LOC107673101,LOC107591071,LOC107716143,LOC107687450,LOC107593913 coding upstream 36160 14246442 ~ 14257712 (+)
casp9 casp9,LOC107673102,LOC107737696,LOC107687452,LOC107716147,LOC107593914 coding upstream 48168 14240745 ~ 14245704 (+)
nol9 nol9,LOC107591073,LOC107737527,LOC107687449,LOC107716145,LOC107593915,LOC107673104 coding upstream 54622 14233101 ~ 14239250 (+)
klhl21 klhl21,LOC107687446,LOC107593916,LOC107716146,LOC107591074,LOC107673096,LOC107737529 coding upstream 68471 14217507 ~ 14225401 (+)
olfml3a olfml3a,LOC107673069,LOC107737697,LOC107593917,LOC107687444,LOC107716140,LOC107591119 coding upstream 144663 14141884 ~ 14149209 (+)
erbb3b LOC107673099,LOC107737518,LOC107668345,LOC107593907,LOC107716154 coding downstream 47079 14345196 ~ 14366196 (+)
pa2g4b pa2g4b,LOC107737517,LOC107593906,LOC107591063,LOC107668344,LOC107673109,LOC107716155 coding downstream 68441 14366558 ~ 14371893 (+)
esyt1a esyt1a,LOC107737514,LOC107673110,LOC107591117,LOC107716156,LOC107593905,LOC107668346 coding downstream 77476 14375593 ~ 14390509 (+)
fmnl3 fmnl3,LOC107673105,LOC107737516,LOC107716159 coding downstream 92698 14390815 ~ 14428183 (+)
LOC122328739 NA coding downstream 155589 14453706 ~ 14455543 (+)
LOC122328961 NA non-coding upstream 20137 14264664 ~ 14273735 (+)
G157531 NA non-coding upstream 97176 14196431 ~ 14196696 (+)
G157521 NA non-coding upstream 146256 14147410 ~ 14147616 (+)
G157494 NA non-coding upstream 205353 14087581 ~ 14088519 (+)
G157496 NA non-coding upstream 206614 14085594 ~ 14087258 (+)
G157551 NA non-coding downstream 75460 14373577 ~ 14375050 (+)
G157608 NA non-coding downstream 266223 14564340 ~ 14566056 (+)
G157609 NA non-coding downstream 268402 14566519 ~ 14566730 (+)
G157610 NA non-coding downstream 269084 14567201 ~ 14568506 (+)
G157611 NA non-coding downstream 271015 14569132 ~ 14569509 (+)
c1qtnf12 fam132a,LOC107591142,LOC107716139,LOC107593919,LOC107687484 other upstream 167671 14094078 ~ 14126201 (+)
LOC122328708 LOC107737579,LOC107672049,LOC107565833,LOC107712694,LOC107687392,LOC566587,LOC107593419 other upstream 2041890 12246193 ~ 12251982 (+)
kctd6b kctd6b,rpl10,rl10,LOC107671957,LOC107570288,LOC107737715,LOC107560935,LOC108436290,LOC103399204,LOC107672042 other upstream 2547302 11697414 ~ 11746570 (+)
LOC122328549 smim4,LOC107560937,LOC107671967,LOC107737614,LOC107712735,LOC107699582,LOC107570283 other upstream 2561511 11730980 ~ 11732361 (+)
G156586 NA other upstream 3116839 11174421 ~ 11177033 (+)
si:dkey-151g10.3 LOC107737519,LOC107716153,LOC107593909,LOC107668334,LOC107673054 other downstream 1584 14299701 ~ 14343274 (+)
pkig pkig,LOC107737509,LOC107673080,LOC107574720,LOC107564651 other downstream 305676 14603793 ~ 14636817 (+)
itih6 LOC107737505,LOC107673092,LOC107574689,LOC107695841,LOC107716181,LOC107564649 other downstream 311412 14609529 ~ 15153978 (+)
LOC122328906 LOC107673074,LOC107737500,LOC107695835,LOC107716175,LOC107574686,LOC107564653,LOC107576192 other downstream 382743 14680860 ~ 14686618 (+)
LOC122328914 szrd1,LOC107673108,LOC107716129,LOC107737539,LOC107687433,LOC105899027 other downstream 414030 14712147 ~ 14714555 (+)

Expression


Co-expression Network