krt8 (krt8,LOC107681390,LOC107551542,LOC107705700,LOC107666368)


Basic Information

Item Value
gene id krt8
gene name krt8,LOC107681390,LOC107551542,LOC107705700,LOC107666368
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 6485428 ~ 6490071 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224956.1
CTGTTCTCTATCTGCTCGAGTTTCTCCAGCACAGCAGACAAGGCTCATATCTGCTGCTCTCGCTCCCCCTGCTCCAGGTCATTCTCTACTAGTACAAGACAGAAAACACACCAGCAGGATGTCGTTCAACAAGACCACCAGCTACACTGTGAAGTCCTCTTCTTCTAAATCTGCCCCACGCAGCTTCAGCAGTCTGTCCTATGCCGGCCCCAGTGCCAGCCGGCAGAGCTACAGCGTGCGTAGCTCCTTTGGAGGTGCTAACCGTGGCATGGGAGCTGGAATGGGAGGTGGTGGCTTCATCAGCAGCTCTTCAGCCTACGGTCTTGGCATGGGAATGGGCATGGGCATGGGTGGCGGTGTCGTAGCACCCATCCAAGCCGTCACCGTCAACAAGAGCCTCCTGGCACCTCTGAACCTGGAGATCGACCCTAACATCCAAGTTGTCCGCACCCAGGAGAAAGAGCAAATCAAGACCCTCAACAACCGTTTCGCTTCCTTCATTGATAAGGTACGTTTCCTGGAGCAGCAAAACAAGATGCTGGAGACAAAATGGAGCCTCCTTCAGAACCAGACGGCCACGCGCTCCAACATCGACGCCATGTTCGAGGCCTACATCGCCAACCTGCGCAGACAGCTCGACAGCCTTGGAAACGATAAAATGAAGCTGGAGGCTGACCTGCACAACATGCAAGGCCTTGTTGAGGACTTCAAAAACAAGTATGAGGATGAGATCAACAAGCGCACAGAGTGCGAGAACGAGTTTGTGCTCATCAAGAAGGATGTTGATGAGGCCTACATGAATAAGGTTGAGCTGGAGGCCAAACTGGAAAGCCTCACTGACGAGATCAACTTCCTCAGGCAGATCTTTGAGGAGGAGATCCGTGAGCTGCAGTCCCAGATCAAGGACACCTCAGTTGTTGTTGAGATGGACAACAGCAGGAATCTGGACATGGACGCCATCGTCGCTGAGGTCCGCGCTCAGTATGAAGATATCGCTAACCGAAGCCGCGCTGAGGCTGAGATGTGGTACAAGTCCAAGTACGAGGAGATGCAGACATCTGCAAACAAATACGGTGATGACCTTAGATCAACAAAGACAGAGATCGCTGACCTTAACCGCATGATTCAGAGACTGCAGTCCGAGATTGATGCCGTGAAAGGACAGCGCGCCAATCTGGAGAACCAGATCGCAGAAGCAGAGGAGCGTGGCGAGTTGGCCGTGAGAGACGCCAAGGCCCGTATTAAGGACCTGGAAGATGCCCTGCAGAGAGCCAAGCAGGACATGGCCCGCCAGATTAGAGAATATCAAGACCTGATGAACGTCAAACTCGCCCTGGACATTGAGATCGCCACATACAGAAAGCTCCTGGAAGGAGAGGAGGACAGACTGGCAAGTGGAATCAAGGCCATCAATATCTCAAAACAGAGCACAAGCTATGGCGCTTATCCCCTGGAAAGTGCAAGCAGCGGATACAGCAGCTACTCTAGTTATTCCAGCGGCTACGGTGGCGGCTACGGTGGCGGATACGGTAGCGGCTACAGCTCTGGCGCCGGCTACAGCTCTGGCAGTGGCTACGGTGACACCGTCTCTCAGACAAAGAAGAGCGTTGTGATCAAGATGATTGAGACCAAGGATGGCAGAGTGGTGTCTGAGTCCTCTGAGGTCGTCCAAGATTGAGCGAATACCCTTCCCCAATTCTGTCCTCTAAACCTCACGCCTCTTACGCATTCCTGATCTTCCCTCTCAACCGTTATAATTGCGGCCGTTCCAAGGCACTAGATGGGAATGCAGTCATAAACCAggttttaaaagcaataaaccaTTCACACTGACCAAAGAATTCCAGAGGGACCAAATGCTCTCACTGCTCTTATCGTGCCTTAATCCATATCACTAAAAACTCACGCCCTCAGGCCCCTGCACAATACTGTCTTCAGATCTTACCTTGCACAACATGGCCACGTGTATAGGCTGGACAATTCTCGATGTGCCACTAACATGAGCTAGCCATTTAGTTGAAGTGCTAAACATGCTAAGAAACTGATTTTTTACATGAAGGGATATGTTTGCATTTGCGCTAAATTACTAGCATGTTAGTGGTAGATCCATGTGGTTTTGCCTTTTTAGTAGAGAAATGTTGCCCATTGTGTATCCTGTTTCTGAGGTGCTGTTTTTGctaccaaaataaagtgtttaccTAAAA

Function

symbol description
krt8 Predicted to be located in cytoplasm. Is expressed in several structures, including EVL; cardiovascular system; integument; pectoral fin; and sensory system. Human ortholog(s) of this gene implicated in liver cirrhosis. Orthologous to several human genes including KRT8 (keratin 8).

NR:

description
PREDICTED: keratin, type II cytoskeletal 8-like

GO:

id name namespace
GO:0050896 response to stimulus biological_process
GO:0007601 visual perception biological_process
GO:0016363 nuclear matrix cellular_component
GO:0045095 keratin filament cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K07605 KRT2; type II keratin, basic

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224956.1 True 2204 mRNA 0.51 9 6485428 6490071

Neighbor

gene id symbol gene type direction distance location
foxp1a foxp1a,LOC107727024,LOC107681376,LOC107568046,LOC107705705,LOC107666297 coding upstream 115443 6338411 ~ 6369985 (+)
eif4e3 eif4e3,LOC107568047,LOC107705706,LOC107666244,LOC107681400,LOC107727004 coding upstream 147290 6333323 ~ 6338138 (+)
rybpa rybpa,LOC107666235,LOC107705708,LOC107727016,LOC107681380,LOC107568051 coding upstream 153209 6323926 ~ 6332219 (+)
pdzrn3a LOC107727014,LOC107551536,LOC107681378,LOC107705709,LOC107568048,LOC107666574,LOC107666213 coding upstream 169730 6292711 ~ 6315698 (+)
cntn3a.2 cntn3a.2,LOC107727029,LOC107681399,LOC107705655,LOC108438229,LOC108275552,LOC107568042 coding upstream 215201 6202638 ~ 6270227 (+)
krt5 LOC107727021,LOC107551543,LOC107681386,LOC107559866,LOC107705699 coding downstream 19620 6509691 ~ 6514093 (+)
plxnb1a plxnb1a,LOC107551544,LOC107726992,LOC107705653,LOC107666389,LOC107681368,LOC107559853,LOC108275501,LOC105889750 coding downstream 35540 6525611 ~ 6589601 (+)
prkcbp1l LOC107551546,LOC107681388,LOC107727017,LOC107666406,LOC107705695 coding downstream 113575 6603646 ~ 6622410 (+)
mapre1b mapre1b,LOC107559863,LOC107681395,LOC107666429,LOC107551545,LOC107727025 coding downstream 132783 6622854 ~ 6633347 (+)
lama5 lama5,LOC107681381,LOC107727012,LOC107666435,LOC107705651 coding downstream 150807 6640878 ~ 6708667 (+)
LOC122328814 NA non-coding upstream 3275 6461319 ~ 6482153 (+)
G155360 NA non-coding upstream 26399 6458558 ~ 6459029 (+)
LOC122328815 krt18,LOC107681396,LOC107727028,LOC107551541,LOC107666358,LOC107568050,LOC107705701 non-coding upstream 27619 6384561 ~ 6457809 (+)
G155351 NA non-coding upstream 61348 6422223 ~ 6424080 (+)
G155330 LOC107727022,LOC107681375 non-coding upstream 105063 6376070 ~ 6380365 (+)
G155371 slc16a7,LOC107727020,LOC107559865,LOC100699719,LOC102785214,LOC101478097 non-coding downstream 111338 6601409 ~ 6602083 (+)
G155372 NA non-coding downstream 145810 6635881 ~ 6637488 (+)
G155454 NA non-coding downstream 213102 6703173 ~ 6705526 (+)
G155455 NA non-coding downstream 213440 6703511 ~ 6707259 (+)
LOC122328803 NA non-coding downstream 230299 6720370 ~ 6723864 (+)
LOC122328459 g6pd,LOC107723128,LOC107697003,LOC107594489 other upstream 1649944 4817365 ~ 4835484 (+)
ube2t ube2t,LOC107746510,LOC107707375,LOC107673550 other upstream 2788406 3694652 ~ 3697022 (+)
mitfb LOC107704626,LOC107709243,LOC107748437,LOC108438070,LOC107687304,LOC107558923,LOC107709232 other upstream 3388393 3060509 ~ 3097035 (+)
rbm10 LOC107709225,LOC107687301,LOC107704624,LOC107748436 other upstream 3475411 2995169 ~ 3010017 (+)
LOC122329169 NA other upstream 3541622 2925308 ~ 2943806 (+)
si:ch211-220i18.4 LOC107551506,LOC107666586,LOC107559855,LOC107681367,LOC107705652,LOC108275527,LOC107100285 other downstream 102531 6592602 ~ 6598532 (+)
G155561 NA other downstream 735923 7225994 ~ 7238919 (+)
tcea2 tcea2,LOC107681409,LOC107551521,LOC107705683,LOC107571665,LOC107666524 other downstream 808289 7298360 ~ 7305534 (+)
LOC122328506 klhl14,LOC107677170,LOC107599684,LOC107554641,LOC107717384 other downstream 1831634 8321705 ~ 8333376 (+)
G155799 NA other downstream 1998015 8488086 ~ 8488641 (+)

Expression


Co-expression Network