ptpn22 (LOC107737496,LOC107668554,LOC107570169,LOC107716160,LOC107695833,LOC107564640)


Basic Information

Item Value
gene id ptpn22
gene name LOC107737496,LOC107668554,LOC107570169,LOC107716160,LOC107695833,LOC107564640
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 15324344 ~ 15338267 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224965.1
agagagaaaaagagaaggcCATAGACAgacaacaaacacacatgcaacaaaTGAAAAAAGCGAGAGAAACTGAAGTGAGAGATGGAGGGCGGAGAGGGTCACAGTGATGCTTCGAGTTGACCACAGAACCGGTGAACTGCCACTGCTTCCGTGACGCCACATCGCACAGTTCCTCAGCTCAGCTACAGACCTACAACAGACgcacacagagagaaagtgaaagatGGACTCCTTTCAGAAGCCCACCGATCTCCCCTATCTCTGACATGACTGAAGGAGCTGCTGTGTCACACATCATGCCATGGACGCCCAAGCCCACATTCTGAGGGACTTATTGGCCAAAATTGCCAGCAAAGAAGCAGAAGAGGAAGGGGCAGAGAATGGTTTTGCCGGAGAGTTTTTGAAACTGAAGAGACAGTCTACTAAATACCGCGCTGAGAGGACGTACCCCACCTCAGCCGCGGACAAACAAGACAATGTGAAGAAGAACAGATACAAAGACATTGTTCCCTTTGATCACAGCAGAGTAAAGCTCTCCTTCGTCACATCCAAGCATGACACAGATTACATCAATGCTAGTTTCATTAAGGGAGTGCTGGGCACTAGGGCGTATATCGCCACACAAGGCCCGCTGCCAAACACTGTGCTCGACTTCTGGAGGATGCTGTGGGAATACAACGTACAGgTTATTGTGATGGCTTGCCGGGAGTTTGAAATGGGAAGAaaaaaatgTGAGCGTTACTGGCCGGAGTCAAAGGACGATGTGTTCGTGTGTGAGCCCTTTACCATTCACTATGAGTCTGATGAGAATAAGGGAGAATATTTAACACGGACGCTGAAGGTGAAATTTAAACAAGTGTCTCGGACACTGAAGCAGCTGCACTATGTGAACTGGCCGGATCACGGAGTACCCGACTCCATTCCTGCCATCCTGGAGCTGCTGCAGGACATGAGGATCTACCAGGATCACGATGAGATTCCCATCTGTATTCACTGCAGTGCAGGCTGTGGAAGAACAGGTGCTTTGTGTGCCATTGACTACACCTGGAATCTCCTGAAGAGACAGATGATACCAGAGAATTTCAGTATCTTTGAACTGGTAAAGGACATGCGCACACAGAGGCCCTCTGTGGTTCAGACTAAGGAACAATACGAACTAGTATACAGGACCATAAAATTGCTGTTTGAGAGATATCTAGCAGCAATGGATCAACCAAACAGAGAGGTCCCAGCTTCCCTTTCTCCTGTGATCTTAAGTAGCGGAAGTGAGCTCTCGGATTTCAGCGACTCTGAATCAGAGACTGGGACAGACTTCACAGCATTGCTTCGAACTGAGCACAGGAATGAAGAGATGGAAATGCCTGTACTCAATCACTTCACACACAATGCCCCTTCTTGGCTACAGCCTCATccagaaccattcagtcaagaGGTCATCTCCACAAAACTCAATCCTGCAGACACGCTCAATACAAAGAGTGAATGGACCCAGATTACAGACCAGAGGTCGTTCATAGCAGCAACTCCTCAAACAGACCTTACAACCTGTGGATCTCAGAGAGCCGAGCCATCCATCAGCTTTACCACTGATCTCACCCACGCTGCATGCTCGAACTATCCCATCAGCCCAACTACGAGGCATGTGATGTTTGCAGAGAACCAAGATGTTAGTCCTGCTGCCACAGACCACAACCCTATCATCCCTAGCACTGTCTGCTACACTGTGGAAGATCCTTATTTTGGGCCCGAGTCTCCACCACTTTGCAACAACCACAGCGCTTTGGACTCTATAATTCATGATGAGTGGAAGGAGAGCCCTTGTTTCACAATACCTAGTTTAACGCTTAATAATCAGGTGTTAGAACTTCCAACACATGACTGCAATGACAAAGgTACAAACAGACCTTCATCTGATGAAGACACTCCTCCTCCTTTACCAGACCGAACCCCAGAGTCATTTATTCTGGCAGATGAAATGAACGATATCAGTGAAAACACTGAGATGTTGACATTGGTGATGCCAGCCAGCTCAGAGTCTGAGAGCGTCATTAAAGACAGCCCACCTTCACCTGTGCCCCCACTGCCTGAGAGAACTCCAGAGTCTTTTGAAATGGCCACAGATGAGGCTTTGGTAGAAAACGTGATGCAGGAAAAGCCGCAGGACGTTGTAATGAGAGTTGGAAAATCTCTAGAGTGGTCTGGGCAATCAAATGAGGCTCAGGCAGACAAGAAACGATCTTGGTCCAGAAGCAAGAGCTTGAAACTTAGAATGTCGCTTCCTGCTGCCGCATTATGTGCTCCACTCAGTCCTATTCCGATCACAAGTCACAGTCCTCCTCCTCTACTGTACAAACATCCTCAAGaatctCTGCTGCACGCCCCGGCTCCACGTGAGCAGGCATTCACCTCGGTTCCCGGGACAGAAAGTATAACTCCACCTCCTGAAAGGACTCCagaatcttttatttttcacacgGAGAAAGtggCCGACGGCAGCGCCCCCTGTCAGCCAGCTAAGGCAGAGCAGCCCAGACCGAGAGTGGGCACGTCCTCTGAATGGTCAGGCAGCTCCCAGCCCAGATCATCCATAGAGCATTCTTGGAGCAGAAGCAAGAGCGTCAGAgcaaaaagttcaaaacaagAGACTCTATCTGTGGCTCCGCTGACTCTGCCTGTCGCTGTAACCATAGCAACTGGAGGACAAGCAGAGCTCCAGACGGCAGCCAGCAGCCAGCCGAAAGCAACGGGACCAACAGAGAACCAGGATAAGGGTGGAGAGAAAACTTCTCTGGTCAGCAAGGCCAGGACCAAGagTATCAAGTTTTTGAAAGGAAAGCAGAAGACAAAAATATCCCCGCCTCCGATCCCGCCCCCAGCCCCGCCTTCAGGCCAGTCTCCAGCCCCGCCTCAGTCTGCTCTACCGCCCTATGGTGCCGCTGTTGGGTTCTTATTTTCTTTTGGATCTCGTTTTGGGAAACCAAAAGGCCCACGAAATAAGCCAGGAACATGGGTCTAGTTTACACCGAaggtgaaagaaaaggaaaagggCCTCGCAGGACAGTTGAAAAGATGATTTACTGTCACTGTGGCTTTGAAGGATAGAAGCGCAACATCGTACCTCACTCAGAAGATGGACATACATAAAGACTGTGCTTTTATCAATGACTTTGACATTTTGTAAAGGTATAATGCAAGCGAACTGCCTTTTTAGACTTTAAATATTAAGGAGCGTCGCAACTTTATGCgacttaaatgtatattaaaattattgcaGATGTGTAACTAATGACAAGATAACACAAGGGATGAATGTACTGAAAAGTAGAAACTTCCATAATCTCATaggtaacattttaatgtattttataatatatagcaCCGCAGGTAACCAAGGCCAATCAAGATTTTCTATGTGACACATCGATGCACTTCGTCACAGTGCATTTGGTGCCATCTGAAAGGGATGAAATtgctttttcttatttctatATTTCCAATTTCTGATACAGTGAAACTCTTGGTACACTcataaaatggtttatttaaaaaaatacagaaaaaagtcTATGCATTCCattgcatttttacacaattgAAAAGATCCACGTGACAGTTCTATTAAATGTAACTTagcatttacaaaacattactTTGACTATGTTCATAAATGACATCTAATTAGTCCTTAAAAATCAATGAAATCAAAAACCTTTATACAAATATCAAACAGAGCAAATAATGAATCAAACACACAGAGCATGCCTTGATCCCTAAGTGGATTTTTCCTATATTACAAACGACCATCGATACCTgatcaacacaaaaaaagaaaactagctGCCAAAATTCAGAAGAAACATAGAACACTAAACAAcatgtttatttcaatataaCATGAAACCGTAAGGTATAAAAGCATAATGTGATGCAGAGCTGAAAACATGTCTGAAACGGTATATATGGGAAGATTCATCGTAATAGATTTTACTGGTAAAGACACCAATAAAAAAGGTCTTTAAAAAATTAGTAGAGTAAGTATTCTAGGCGAAAGGAGGAAATgatcttttctttcattaaaatgttaaactgcAGAACATGTAACTAAGGAAAAGCCATTGTATACTATAgggaaaattatttttgtttcggCTTTCACACCTGCCTTTATAATACTAATCCTAATTAAAGATTTCTGGGAAACATA

Function

NR:

description
tyrosine-protein phosphatase non-receptor type 22-like

GO:

id name namespace
GO:0016311 dephosphorylation biological_process
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG:

id description
K18024 PTPN12_18_22; tyrosine-protein phosphatase non-receptor type 12/18/22

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224965.1 True 4204 mRNA 0.45 29 15324344 15338267

Neighbor

gene id symbol gene type direction distance location
LOC122328905 LOC107673074,LOC107737500,LOC107695835,LOC107716175,LOC107574686 coding upstream 158806 15159750 ~ 15165538 (+)
LOC122328910 aagab,LOC107596965,LOC107686304,LOC107738712,LOC107718310,LOC107672261,LOC107583761 coding upstream 246834 15074016 ~ 15077510 (+)
LOC122328909 LOC107715611,LOC107563070,LOC107690380,LOC107715213,LOC107693040,LOC107564380 coding upstream 554018 14759390 ~ 14770326 (+)
pfkfb1 pfkfb1,LOC107673088,LOC107737504,LOC107716165,LOC107574688,LOC107564646,LOC107695839 coding upstream 664412 14649780 ~ 14659932 (+)
si:dkey-78k11.9 LOC107737691,LOC107564648,LOC107574687,LOC107695840,LOC107716176 coding upstream 675112 14647107 ~ 14649232 (+)
si:ch73-206d17.1 LOC107726152,LOC107571682,LOC107695830,LOC107568454 coding downstream 137456 15475723 ~ 15478611 (+)
zgc:158263 zgc:158263,LOC107716164,LOC107695826,LOC107568456,LOC107668552 coding downstream 262385 15600652 ~ 15608453 (+)
cacnb3b cacnb3b,LOC107695823,LOC107570227,LOC107668566,LOC104967530 coding downstream 334785 15673052 ~ 15685048 (+)
rnd1b rnd1b,rnd1,LOC107745453,LOC107716191,LOC107668562,LOC103037018,LOC108275505,LOC103358261 coding downstream 353243 15691510 ~ 15702243 (+)
ptges3a ptges3a,ptges3,LOC107745455,LOC107570321,LOC107716195,LOC107695820,LOC107571786 coding downstream 386516 15724783 ~ 15729206 (+)
G157673 NA non-coding upstream 12650 15182135 ~ 15311694 (+)
G157633 NA non-coding upstream 14857 14699940 ~ 15309487 (+)
G157630 NA non-coding upstream 165593 14676736 ~ 15158751 (+)
G157640 NA non-coding upstream 602859 14719934 ~ 14721485 (+)
G157634 NA non-coding upstream 621475 14702443 ~ 14702869 (+)
G157704 LOC107570193,LOC107668567,LOC107695831,LOC107568457 non-coding downstream 140776 15479043 ~ 15482462 (+)
G157705 NA non-coding downstream 144405 15482672 ~ 15486980 (+)
G157728 LOC107745451,LOC107716070 non-coding downstream 202526 15540793 ~ 15543928 (+)
G158030 galnt6,LOC107695825,LOC107568460,LOC107745475,LOC107570209,LOC107668563 non-coding downstream 273340 15611607 ~ 15615798 (+)
G158061 NA non-coding downstream 379523 15717790 ~ 15720006 (+)
G157620 NA other upstream 19794 15300704 ~ 15304550 (+)
itih6 LOC107737505,LOC107673092,LOC107574689,LOC107695841,LOC107716181,LOC107564649 other upstream 170366 14609529 ~ 15153978 (+)
G157656 megf11,LOC107583869,LOC107672222,LOC107596974,LOC107686294 other upstream 328199 14992350 ~ 14996145 (+)
LOC122328907 mef2d,LOC107741762,LOC107549240,LOC107717782,LOC107597970,LOC107663114,LOC107689865 other upstream 566127 14725910 ~ 14758217 (+)
LOC122328914 szrd1,LOC107673108,LOC107716129,LOC107737539,LOC107687433,LOC105899027 other upstream 609789 14712147 ~ 14714555 (+)
G158152 rps26,RPS26,rps26l,LOC107563646 other downstream 645403 15983670 ~ 16083529 (+)
G158162 dnajc22,LOC107708801,LOC107716089,LOC107563648,LOC107571715,LOC107695753 other downstream 683932 16022199 ~ 16023394 (+)
LOC122328571 kmt2d,LOC107681934,LOC107716211,LOC107695802,LOC107563643 other downstream 1243703 16581970 ~ 16607408 (+)
G158446 atf7a,LOC107563644,LOC107570410,LOC107745462,LOC107681998 other downstream 1282931 16621198 ~ 16664314 (+)
LOC122328551 atf7b,atf7a,LOC107711055,LOC107585125,LOC107740570,LOC107667392,LOC107673513,LOC107582698,LOC107681998,LOC107716199,LOC107745462,LOC107570410,LOC107563644,LOC107695816 other downstream 1297179 16635446 ~ 16669648 (+)

Expression


Co-expression Network