LOC122328900 (rsbn1,LOC107668555,LOC107570136,LOC107737499,LOC107716162,LOC107564641,LOC107695834,LOC100330644)


Basic Information

Item Value
gene id LOC122328900
gene name rsbn1,LOC107668555,LOC107570136,LOC107737499,LOC107716162,LOC107564641,LOC107695834,LOC100330644
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 15339059 ~ 15347198 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224966.1
ctgtatttttatttaacgtttCCCCATTGCACAAAACGGTCTTACCATCGGTTCTTGTTTTTTAAGAGTCAGCGAGCTGCTGAATCGAAAGAATCGCGGACCGATTCGCGAACAGTTTAAGCTGCGTTTCCCCGAAGCATCTTAAAGTAGATCGTAGCTCCGTTCGGTTTCGCTGGTGCCTTTGGGGAAAACGGCACGGTTCTGTAAACAGGTTCAATGGATGCCTGAAAAGATCCGACTCACATAAACGATTCGCGCACGAATCGGACacggttatttttaatttgacaccGCCGACTTAAAAACGCGACGCTCGTGCCGCCAATAACAGGCGGTAGCGAAGCCTTCCGTCTGACGCAGGTCGTATAACGTTACATAGACCGACCAAAAATAGCCCAATTAGCAAGAAAGCGTCCAGCGTAAACGCCCACCAAAGAAACCCGACACCGAGCACGCTATTAGCTCCAGGATGTAGCGCGCTGCTCTTTTGTTAGTCGTGAGGGCAGCGCAGAGCGCATTTATCTCCTCTCAACGACACGGTACCGCCCAGCCCCTGAAGCTGCTACAGCATTACGTCAGTTACCGGCCGCGGTGCGTGCAGCAGCGCACGCAGCCCTTGAACCACGGCGGCCCAGAAACATCACTACCCACAAAGCTGCCGATTGTGCGCACGCGCGCTCCTGGCGGAAAAACTACAAACGCGTGAGCGCCGATTGGCTCCTGACACAAGAACTACAGCTCCCAATAGACATGCGCAAAAAGTCCCTCTTAAAGCCTTTTAAATTTACGTGCAAAATGGCTGCACAGGTCGATCTACTGCGCGTCAAAGTAGAGGAGAAGAGCAGGGACAGCTTCGACAAAGCCgccaaagagaagaaaaagaagaaaaaacgagAATGTTCGCCGTCCGATGACAAGCGCGAGAAAGCGGAGAAGGAAGCGAAGAAAATAAAGCTACATCACCACCAACACCATCACCAACATGCCCAACAACGAGCGCATCCACCGCACCAACAACAGAACAGCCAAGCGCGCAACTTCAGCAAAGAGCAGGCACCTGTGCAACACCGCCATCACaaccatcatcaccatcacagCTCCAAGAAAGAATTACCTCCGGGATGGCCGCCGCGCAAAGTGACACCAGCGGCGGCTCACGTCCCGCAGAAGACAGTCCTGCCGCCTTCCCCGCTCTTCACTTTCACGCCGCTCAAAGTAGCGAAGGCCGAGACCCCCAACAACAAGCCCAAACACATCGAGAAGGACGCCAAACTCAAGCCCAAGAAAGAAAACGCCGAGGCGAACGTCAAAGTGGGCGAATGCAAGAAGAAGAAAGAGCTCCATAATGAGAATGGCAAAACCCAGACTTTGGAGGAGTACCttctaaagaaaaagaaaaagaagcggCGGCATCGTGAAGATGAGCGTGGCAAGAAGTTGCGCGTACACAACAAAGAGGTCCAGACGCTGTGTACGGGATTGGCAGAAGATGCTCAGCCTTCTTCTGAAGACCCTCTGTTGCATGCGTACATTAAAGATGAAAAGCCGTGTCCGGGCTTAGGTGAGTGTCAAACTCCCAAAGCCGAGAAGAAGTCGTTCCTCTCGCACCGAGACCACTTCATCCGCAGCTCGTGGCTTCAGACCAACACGTCCTTCAGCAGGCTGATCCATGAGGAAAAGCAGCCCAACGGAGGGGCGTGTGTTCTACACGCTTACGCTGATGAGCTGTCTTTACTGCGACCGGGAGAAACTGAAAGATTCGCTCAGGAGTTTCTGGATCTTGCCTTTGCTGAACACCCTAAAGGAGCCGCACGCTACGCACTCGCAGTGGTGCACGGAGCGGCTGCCTACCTGCCCGATTTCTTGGACTACTTTGCCTTCAATTTCCCAAATACACCTGTCAAGATGGAAATCCTTGGTAAAAAGGACATCGAGACCACCACGATTGCCAACTTCCACTCCCAGGTGAGCCGAACGTACTGCTCTGGGACGTATAGAGCTGGTCCCATGAGGCAAATTAGTCTGGTCGGTGCGGTAGATGAGGAGGTGGGCGATTACTTCCCAGAGTTCTTGGACATGCTTGAGGAGTCTCCGTTTCTGAAGATGACTTTGCCATGGGGCGGCCTGTCTAGCCTAAAGCTGGACTGCAGGTCTCAGAGTGATGATGGTCCCATCATGTGGGTGAGACCAGGAGAGCAGATGGTCCCCACAGCCGATATGCCTAAATCTCCGTTCAAGAGACGAAGaTCAATGAACGAGGTCAAAAACTTGCATTATCTCCCGAGAACCAGTGAACCGCGTGAGGTGCTCTTCGAGGATCGGACACGAGCTCACGCTGATCACGTTGGCCAGAGTTTCGACTGGCAGAGTACAGCAGCTGTGGGTGTCCTGAAAGCAGTGCAGTTTGGGGAATGGAGTGACCGGCCACGGATAACCAAAGATGTGGTCTGTTTTCACGCTGAGGACTTCAATGATGTGGTTCAAAGGCTTCAGCTAGACCTGTATGAGCCACCTGTGTCCCAGTGTGTCCAGTGGGTGGATGACGCCAAACTCAACCAGCTACGGCGAGAAGGCATCCGTTACGTTCGCGTGCAGCTCTGTGACGACGACATCTACTTCATCCCTCGCAACGTGATCCACCAGTTCAAAACCGTCTCGGCCGTGTGCAGCCTCGCCTGGCACATCCGTCTAAAGCAGTACTACTCCGAGgaacagaaagaggaagagTCGAAGGACGTTAAGACCAAGGACCTGTGCTCCACATCCTGTCCTCCTCCCTCTTCATCCCCTGTTCACCCAGACACCAAAGTCACCTCTTGCGCTCGGCTACAAGCGGACACGGCACAAGGCGGAGTGGCCAAAACGGACGAACTGGTTTTCCAGAGGCCTGCAACGCCACCCAGAGAGCCTCAGCCCGCACCTCCGCAGCCGGCTAAATCCGCCCACACTGTTCCCGCCGGCCCCGTCCCAGCACCCTGCCCTCTGTCCTCGCCCACACCAGAGCAAATGCTTCCACAGGCTCCCGCCGAGCCTGCATCAGACTCCTCGCTCCACGGCAGCAGGTCTACAGAGATCCCTGAATAACTTCCAGATCCTTTCTTTTGCAGAGGGACGGGGTTTTATTTCACCTAACAGACTTGACTGACATTCcgcagtgtaaaaaaaaaaaaaagaaaaaaggaatatCTGGATTTTGCCTAAAAATGATGAAGactgtatatttttcttttttagcgTTTGGTTAAGGAAATGACCCCGTGAGTACTTTTTAGGTTTTTCTCAGCCAAagtatttaatttgaaatatatttttgctgattactcagtattgttttatatttgtttatatattattattattaataataataattattattattataaatgagaCAAACTATCTCTCAAGAGGGACTTTTCATGTTTCCCAGGCGTCATTTGCATCATGGTAACTTCTAATTGGTttctacaaacaaaaacaaggaaaaaaagtGCCTGTCACAAGTGGAGAGCAGCAATCATATCTTAAAAGAGATGAatagtcttatttttattttttattttttttgtcactgaaATATATGACACATTTAAGCTAGACTAGTGAGTAGGCATCGATTTAAAGTGAGAGATATTTGCTTTTTCGTTGATCTTTCTCTGGTTCGCTTAAaggaaaatgatttattttttgaatgactAATAGCCGTAATTATCAAAGAGGAACTTGTTCGTTACCTCTCATGTATGCAGGAAATAGGATTCGGCCTCCGCAAGAAGgttgttcattttgtttgttcattttaattatttatttttgtccaaaaGAGTCTTTTTAAGATCATGATCATAAATTAATTtgtcatgtttgttttctgtctgtattGTGTGCAGAAGCCgttgtgctttgtttttatttttgactaggAAGACATGTTCCATCAAGTCCGGATGTTAGCAGAAAACTAGATGGAAATGTAAATAACCAAACCTACACTCAGGGGCAACATACTGATGCCTTTTCATTTGGTCAAGTCTCCTTTTACTTTGCTTTGAAGTTTTATAGCAATCTAATGGATGCGTTCAGATTTGGGGGTTTTGACTGAACCTGTAATTCTGACGTGTTCGTATGAGCTTTACGTAAAGGAAAAGGTCTCTTGATTCAGATGGATCATCTAAACAAGGTTCCATTCAGATTTTACACAACTGTGCTCATGCTATCGGAGTAGTTTTAGAATCACAACggaaaacctttttaaatcatttcgGTTTTCTTTATAATGTTCTGAActtctgtttttgtctgtcatcgtcaccactttttaaaaaaatgtcccaaaTGACTAATCTTGTTGCTTTGGCCATTTTAAGttactttgtttcatttttattttatttttctgaaaatccGTCACTGCAAATATGAATTAACACagtaatatacattaataagGCATGAATAAACTCCTGTTTTTCT

Function

symbol description
rsbn1 Predicted to enable dioxygenase activity and metal ion binding activity. Predicted to be involved in chromatin organization. Predicted to be active in nucleus.

NR:

description
PREDICTED: round spermatid basic protein 1-like

GO: NA

KEGG:

id description
K22610 RSBN1, KDM9; lysine-specific demethylase 9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224966.1 True 4473 mRNA 0.47 7 15339059 15347198

Neighbor

gene id symbol gene type direction distance location
LOC122328911 LOC107570149,LOC107668556 coding downstream 15037 15316727 ~ 15324022 (-)
LOC122328567 LOC107668556,LOC107570149 coding downstream 141598 15195117 ~ 15197461 (-)
LOC122328908 smad3b,LOC107686302,LOC107738715,LOC107583760,LOC107672260 coding downstream 246812 15078586 ~ 15092247 (-)
LOC122328916 iqch coding downstream 265177 15049366 ~ 15073882 (-)
LOC122328901 LOC107549209,LOC107689901,LOC107738870,LOC107681562 coding downstream 406053 14905836 ~ 14933006 (-)
tmem269 LOC107570193,LOC107726151,LOC107695831,LOC107668567,LOC107568457 coding upstream 131842 15479040 ~ 15490268 (-)
si:dkey-205h13.2 LOC107716170 coding upstream 155230 15502428 ~ 15506646 (-)
hspg2 hspg2,LOC107745451,LOC107695829 coding upstream 163757 15510955 ~ 15598026 (-)
galnt6 galnt6,LOC107695825,LOC107570209,LOC107668563,LOC107568460 coding upstream 264417 15611615 ~ 15620804 (-)
adcy6b adcy6b,adcy6,LOC107695824,LOC107716189,LOC107745452,LOC107668560,LOC108433131 coding upstream 275283 15622481 ~ 15659407 (-)
G157984 NA non-coding downstream 216 15210228 ~ 15338843 (-)
G158019 NA non-coding downstream 42423 15295888 ~ 15296636 (-)
G158014 NA non-coding downstream 135109 15202366 ~ 15203950 (-)
LOC122328921 NA non-coding downstream 149421 15188148 ~ 15189638 (-)
G157999 itga8,LOC107689880,LOC107717802,LOC107681583 non-coding downstream 493381 14836361 ~ 14845678 (-)
G158024 si:ch73-206d17.1,LOC107571682,LOC107726152,LOC107695830 non-coding upstream 129289 15476487 ~ 15477769 (-)
G158174 LOC107571455 non-coding upstream 256650 15603848 ~ 15607080 (-)
G158188 NA non-coding upstream 333688 15680886 ~ 15681872 (-)
G158198 NA non-coding upstream 380956 15728154 ~ 15789331 (-)
G158208 NA non-coding upstream 465083 15812281 ~ 15812927 (-)
LOC122328902 LOC107737500,LOC107673074,LOC107695835,LOC107564653,LOC108275744 other downstream 37377 14684890 ~ 15301682 (-)
LOC122328913 zgc:162898,c4h15orf61,LOC107738714,LOC107686305,LOC107583911,LOC107718314,LOC107596966,LOC107672207 other downstream 290715 15047152 ~ 15048344 (-)
fitm2 LOC107673062,LOC107737511,LOC107568407,LOC107564660,LOC107716178,LOC107668335 other downstream 749437 14570347 ~ 14589622 (-)
G157909 LOC107673054,LOC107737519,LOC107716153,LOC107591065 other downstream 1008275 14326966 ~ 14330784 (-)
zbtb48 LOC107673103,LOC107716144,LOC107591072,LOC107687447,LOC107737528 other downstream 1106008 14222809 ~ 14233051 (-)
magi3a magi3,magi3a,LOC107695739,LOC107564661 other upstream 219 15347417 ~ 15474390 (-)
LOC122329227 NA other upstream 274744 15621942 ~ 15717250 (-)
G158231 NA other upstream 660908 16008106 ~ 16008915 (-)
G158288 LOC107708856,LOC107570569,LOC107716212,LOC107681953,LOC107695729 other upstream 796635 16143833 ~ 16169834 (-)
tac3a LOC107708854,LOC107571761,LOC107681951,LOC107586540,LOC107695797 other upstream 893612 16240810 ~ 16243395 (-)

Expression


Co-expression Network