LOC122328908 (smad3b,LOC107686302,LOC107738715,LOC107583760,LOC107672260)


Basic Information

Item Value
gene id LOC122328908
gene name smad3b,LOC107686302,LOC107738715,LOC107583760,LOC107672260
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 15078586 ~ 15092247 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224990.1
GCGGTTCACTTTCCACAGACCTGAGGGGCTGAAAAGCATCCGCCAATCTGACTCTATGGGCATAAACTTTCCATTCGTTTTTATCTGGCCATTTCACAGGTCCATCGACGCCACGTCTTTAAAAGCATAGGACTTTGCAGTTCGCTGATAAGGAATATATTCGGAGCTGTTGCCGATTTACTAAAGATGTCTATATTACCTTTCACGCCTCCGATTGTGAAGAGACTGTTGGGCTGGAAGAAGGGCGAGCAGAACGGACAGGAGGAGAAATGGTGTGAAAAGGCAGTGAAGAGTCTGGTGAAGAAGTTGAAGAAGACAGGACAGCTGGAGGAGTTGGAGAAGGCCATCACCACCCAGAATATCACCACCAAATGCATCACTATACCGAGGTCCCTGGATGGCCGCCTGCAAGTATCTCACAGAAAAGGCCTTCCCCACGTGATCTACTGCCGGCTGTGGCGCTGGCCTGACCTGCAGTCTCACCACGAGCTGCGTGCTGTAGACTTGTGTGAGTTTGCTTTCCATATGAAGAAGGATGAGGTGTGTGTTAACCCTTACCACTATCAGCGTGTAGAGACACCAGtTTTGCCTCCAGTCCTGGTTCCTCGGCATGCTGACATCCCCACAGACTTCCCTCCACTGGATGATTTCATCCCCGAGAACACCATATTCCCAGCGGGCATCGAGCCTCCGAGCAACTATATACCGgagACCCCTCCTCCGGGCTACCTGAGTGAGGATGGGGAAACCAGTGACCACCAAATGAACCACAGCATGGACACAGgcTCCCCAAACCTTTCACCCAACCCTGTCTCACCTGCCAACAGCAACCTAGATCTGCAGCCGGTAACATATTGTGAATCCGCATTTTGGTGCTCGATTTCCTACTACGAGCTGAATCAGCGTGTGGGCGAGACTTTCCACGCCTCCCAACCGTCTCTGACCGTAGATGGCTTTACGGACCCCTCTAACGCAGAGCGCTTCTGCCTGGGCCTGCTGTCCAACGTCAACCGCAATGCAGCCGTGGAGCTGACACGCAGACACATCGGCCGAGGTGTGCGTTTATATTACATCGGAGGTGAGGTGTTTGCCGAGTGCCTGAGCGACAGTGCTATTTTCGTCCAGAGTCCCAACTGTAACCAGCGGTATGGCTGGCACCCAGCCACAGTATGTAAGATTCCTCCAGGCTGTAATCTGAAGATTTTCAATAATCAGGAGTTTGCGGCTCTGTTGGCCCAATCAGTGAATCAGGGATTTGAGGCCGTGTACCAGCTCACCCGTATGTGTACCATTCGCATGAGTTTCACAAAGGCTGGGGCAGAATACAGGCGGCAGACAGTGACCAGCACCCCCTGCTGGATAGAGCTGCATCTCAACGGCCCCCTGCAGTGGCTGGACAAGGTGCTCACTCAGATGGGCTCCCCGAACCTCCGCTGCTCCAGCGTGTCATAGGACGAAAACCTCGGCCCGTTTCACGTAACCATACCCTTTCTAACGACATCCTCTATTGCTGCTGAATGCCAAGCAAACAAAAAGAGCGAAACCAAGGACAGGGGGGAGGGAGAAGGAAGACGAACACCTGCTGGACTCCTCGAGAGCGTCACTTTATCATTGACAAGATCCTAATATTTTGCTGGGGGCAAAAATAGACAAGTACAGTCGAAGCACTTTGGACAACGACACTCAAGGAGCACGGATGATATTTCTTCAGCGCGACGAGTTTGAAATGAGGCGTTCTCCTcattgtgaatttaaatgtgaTAACGAAATCTtgatttttgtccatttttgttGTGATCAAGAAGTGTATCGCACATTTAATTTGATCTGAAGGTATTACAATCTTGGGCTCTGAATATGATTGTTTAGATTAATAAACATCCTCAAAGAGTGCTTTGTTTCCACCACCTTCAGTGAAGGGGTCTTGTGTGAACTTTTACAGTATGTTTAGCCTGAAGCTAGTGCTTCGGGGAGCTGTTTGTGTGTAAGTAAATTGCACTGCGCTGGAGAGGTCAATATATAATGTGATTGCCTTTGGTCTCATATGCACGGTCGACCGGGTTTGTATACAGGAACTGAGTGTGTAGAGTTATAACAGAGGTACTTAGCCTTGATTATGGAAAGCACTTGTTTTGAAAAGCACCCAGTGATGGTTTGAACAAAAAGATAGCATTGGAAATTTGTCAGTGACAAATGCTAGTAGCTAAtagtgccatttttttttttttgaactcgATGGTTACCGTTTGAATTATGCTctgcaaatacattttgtattaagtatttttgcattataaactGAACGGAGATTGCGAAAGTATATTTTTACTGCTGCCATAGGGTACTGTAATTAAGATCCATGTCATAGATATAACA

Function

symbol description
smad3b Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; I-SMAD binding activity; and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in several processes, including cell differentiation; regulation of transcription by RNA polymerase II; and transmembrane receptor protein serine/threonine kinase signaling pathway. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in cytoplasm and nucleus. Predicted to be part of heteromeric SMAD protein complex. Is expressed in several structures, including immature eye; lateral mesoderm; margin; nervous system; and tail bud. Human ortholog(s) of this gene implicated in Loeys-Dietz syndrome 3; Lynch syndrome; and pancreatic cancer. Orthologous to human SMAD3 (SMAD family member 3).

NR:

description
PREDICTED: mothers against decapentaplegic homolog 3-like isoform X3

GO:

id name namespace
GO:0007179 transforming growth factor beta receptor signaling pathway biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0005515 protein binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K23605 SMAD3; mothers against decapentaplegic homolog 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224990.1 True 2376 mRNA 0.48 9 15078586 15092247

Neighbor

gene id symbol gene type direction distance location
LOC122328916 iqch coding downstream 4704 15049366 ~ 15073882 (-)
LOC122328901 LOC107549209,LOC107689901,LOC107738870,LOC107681562 coding downstream 145580 14905836 ~ 14933006 (-)
LOC122328919 kcnn3,LOC107723559,LOC107657645,LOC107699550,LOC107714686,LOC107595057,LOC108280396 coding downstream 269809 14772091 ~ 14808777 (-)
LOC122329128 LOC107737536,LOC107673093,LOC107716130,LOC107591120,LOC107687434 coding downstream 354361 14717745 ~ 14724225 (-)
gdi1 gdi1,LOC107564645,LOC107737502,LOC107673075,LOC107716167,LOC107574690 coding downstream 399355 14672277 ~ 14679231 (-)
LOC122328567 LOC107668556,LOC107570149 coding upstream 102870 15195117 ~ 15197461 (-)
LOC122328911 LOC107570149,LOC107668556 coding upstream 224480 15316727 ~ 15324022 (-)
LOC122328900 rsbn1,LOC107668555,LOC107570136,LOC107737499,LOC107716162,LOC107564641,LOC107695834,LOC100330644 coding upstream 246812 15339059 ~ 15347198 (-)
tmem269 LOC107570193,LOC107726151,LOC107695831,LOC107668567,LOC107568457 coding upstream 386793 15479040 ~ 15490268 (-)
si:dkey-205h13.2 LOC107716170 coding upstream 410181 15502428 ~ 15506646 (-)
G157999 itga8,LOC107689880,LOC107717802,LOC107681583 non-coding downstream 232908 14836361 ~ 14845678 (-)
LOC122328920 NA non-coding downstream 247737 14830264 ~ 14830849 (-)
G157966 mef2d non-coding downstream 348924 14651424 ~ 14729662 (-)
G157928 NA non-coding downstream 635135 14383738 ~ 14443451 (-)
G157920 NA non-coding downstream 710957 14366559 ~ 14367629 (-)
LOC122328921 NA non-coding upstream 95901 15188148 ~ 15189638 (-)
G158014 NA non-coding upstream 110119 15202366 ~ 15203950 (-)
G157984 NA non-coding upstream 117981 15210228 ~ 15338843 (-)
G158019 NA non-coding upstream 203641 15295888 ~ 15296636 (-)
G158024 si:ch73-206d17.1,LOC107571682,LOC107726152,LOC107695830 non-coding upstream 384240 15476487 ~ 15477769 (-)
LOC122328913 zgc:162898,c4h15orf61,LOC107738714,LOC107686305,LOC107583911,LOC107718314,LOC107596966,LOC107672207 other downstream 30242 15047152 ~ 15048344 (-)
fitm2 LOC107673062,LOC107737511,LOC107568407,LOC107564660,LOC107716178,LOC107668335 other downstream 488964 14570347 ~ 14589622 (-)
G157909 LOC107673054,LOC107737519,LOC107716153,LOC107591065 other downstream 747802 14326966 ~ 14330784 (-)
zbtb48 LOC107673103,LOC107716144,LOC107591072,LOC107687447,LOC107737528 other downstream 845535 14222809 ~ 14233051 (-)
G157373 LOC107591099,LOC107703059,LOC107737560 other downstream 1796259 13280256 ~ 13282327 (-)
magi3a magi3,magi3a,LOC107695739,LOC107564661 other upstream 255170 15347417 ~ 15474390 (-)
LOC122329227 NA other upstream 529695 15621942 ~ 15717250 (-)
G158231 NA other upstream 915859 16008106 ~ 16008915 (-)
G158288 LOC107708856,LOC107570569,LOC107716212,LOC107681953,LOC107695729 other upstream 1051586 16143833 ~ 16169834 (-)
tac3a LOC107708854,LOC107571761,LOC107681951,LOC107586540,LOC107695797 other upstream 1148563 16240810 ~ 16243395 (-)

Expression


Co-expression Network