LOC122328928 (LOC107716074,LOC107563642,LOC107695755,LOC107571700,LOC107687557,LOC107745480)


Basic Information

Item Value
gene id LOC122328928
gene name LOC107716074,LOC107563642,LOC107695755,LOC107571700,LOC107687557,LOC107745480
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 15862039 ~ 15868101 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225017.1
AATCGGGTTAAAGTTGATTTGGAGACCGGTTGCCCAAAAcgtttttggatattttttaacaacaacaaaaataaaattacggACCGGAGCTTTTAAGTATCTCGATAACTTCAGGGGTTCagtcaaattaattaatgagGGGTTCAATCGGTTTGCGATACTCAACGAAAATAAAGTTTTCGGTTGACCACAAAACTTAATGACGTAACTTACGTCATAGAATTCAAAATTTGACCGTTACTTGTCAGACGCTCACCCTGTCCCTTGAAAACAAAGACTATAAGAATACCGAAATATAATATCTTAGAGAGACTTTGCCTGAAAACAACTCAACGTCTCCACGATGAGCCCTAGcatgaaaattcttattttcaTGGGTGCTTTGGGGTGGGGggtgattttttattttgccgCGACCAGTCCTCTGTCCGAAGAGTATTATCTGTGCGGACACAGGCCTGAGAGAACGATTGAACATCGCGATAAACGGATGATCGGAGCCGAGAACGTCCCAGTGAGCGTTTGGCCGTGGCAGGTGTCTGTTCAGTACAGGCCCAATTCATCCGCCCCGTTTACTCAGGTCTGCGGTGGGGCTATCATCGACCAATACTGGATAATGACAGCAGCTTCGTGTgtaaataagcagcaaaaaagGCAGCTTTTGATCCGAGCGGGAAGCGATAGGTTGGATGTCGACGACGAGTCCACACAGCAATCACGAGTCGCCAGAATTATTAAACACAAGCGATTCAATCCCGTCACCTTGCGGTACAACATTGCACTTTTACAAATGAAGACCCCTTTTGAGTTGAACGAGTTTGTGTATCCCATCTGTGTGCCTGACGATGACACTGCCGATCATAGATACGAATCGTGTCACATCACGGGATACAACGCTCAGCCCGCTGGCGACGTTGGCGCACTGCAAGAGGCCAAAGTGGATTTAATGTCAAGGTCCTTGTGCAATAGGCCAGAGTATTGGAACTATACTGTGCCAGCGGACATGCTCTGTGTTGGTGATTTCGGTGGCGGTGTTGATGGATGTCAGACAAATATTGGCGGACCGCTGAACTGCTACGTCAAAATTAAGGAGCGTTACTTTTTGATTGGAATTCGAGTGAAGGCCACTTCTTGTGGAAAACCTAACCAaccaaatgtttatttgaaagtcTACAGCCTCTATTATTGGATTGAGCGCGCAATGAATATGGCCTtacattaaatatgactttgcatatacataatattttgtataaacagCAGGCCTAATTCACATACCCAGTATTGTGTTTGTGTCATGACTGTATGGACATGAGAAGTGACGAGTAAGTCAGAGGATGTAGTGACCTCTGGTGGACAATCTGTATTAAGCCTGAAGCTTTCAGGAGCTTGTGTCCTGATTATTTTGTTAGATGATTCCTTGATTTCATGAAATGTCATGTGAATAAGAGTAGATTTTccttaaaaagtgtgtgtggatTATTCGAGGACAGgagtgatttttaattaaatctgtatATTTAAACCTACAGTAAACTTCCTTTGAATGACAAGCATGTGCTTTAAAATAGTCTTTTCAGAACCTAAAAGCAGCTCAAATAAATTAAGCATTTGCATTGATGTACAGT
>XM_043225018.1
ATTGGAGGGTGCATGGCCTTGGCAGGTGAGCATACAGCGGATGTCAAGGCATATCTGTGGTGGGTCCATCATCAGCCATCGGTGGGTAATCACCGCCTCCCACTGCTTCAGAAATAGtaacagctataaattacaaatagtGGCTGGAGCAAATTCTCGATCCAAGTATGGAGAGGGTGTCCAGTATCGTTCAGTCCAGCAAGTGGTCCTGCATGAGAACTTCAACCAAACAAATTATGACAACGATGTGGCACTTTTGCATCTACGTCACcctttatatttcacaaagcATGTGCAGCCTCTGTGCATAATGGAAAATGAAATGGATGAGAAACACCTAAGCTTCAGTTCGTGTTACATCACTGGTTGGGGCAGCTCAGTGTTAAAAGgaATGTTATTTAACACTCTTCAAGAAGCTGAAGTCGATCTGATTGATACTGGGATCTGCAACCAAAGAAGCTGGTATGATGGCCATGTTAATGACAACATGATCTGCGCAGGATTTGACAAAGGGGGCGTTGACACGTGTCAGGGTGACAGCGGAGGCCCTCTGCAGTGTTACAGCAAAGACATGGAGAGATTTTACCTTTATGGTGTGACAAGTCATGGAGAGGATTGTGCATTGCCAAAGAAACCTGGCATATATACTCGTGCTAGCCAGTACACCGTCTGGCTGAGAGAAGCTCAAGCAAGATCTGTATCTCCTGCCTCAGTCACAGATCTgccagtttttaaattaatctcaGCCCTGTTTTTCTCTGCCTTCATGGCAATGCTAATGTGAGCCATCCCCCATCAGAGATCATAACAGCTCTCTGGGCTATGCGTTGCT

Function

NR:

description
PREDICTED: plasma kallikrein-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225017.1 True 1628 mRNA 0.42 5 15865355 15868101
XM_043225018.1 False 832 mRNA 0.46 4 15862039 15863648

Neighbor

gene id symbol gene type direction distance location
mipa mipa,LOC107745456,LOC107570312,LOC107668565,LOC107695819,LOC107716194,LOC107571785 coding upstream 125819 15733686 ~ 15736220 (+)
ptges3a ptges3a,ptges3,LOC107745455,LOC107570321,LOC107716195,LOC107695820,LOC107571786 coding upstream 132833 15724783 ~ 15729206 (+)
rnd1b rnd1b,rnd1,LOC107745453,LOC107716191,LOC107668562,LOC103037018,LOC108275505,LOC103358261 coding upstream 159796 15691510 ~ 15702243 (+)
cacnb3b cacnb3b,LOC107695823,LOC107570227,LOC107668566,LOC104967530 coding upstream 176991 15673052 ~ 15685048 (+)
zgc:158263 zgc:158263,LOC107716164,LOC107695826,LOC107568456,LOC107668552 coding upstream 253586 15600652 ~ 15608453 (+)
wnt1 wnt1,LOC107563635,LOC107716204,LOC107695811,LOC107681946,LOC107745472,LOC107570486 coding downstream 126635 15994736 ~ 16000771 (+)
rps26 rps26,RPS26,rps26l,LOC107563646 coding downstream 139515 16007616 ~ 16008734 (+)
lmbr1l lmbr1l,LOC107708860,LOC107681941,LOC107716206,LOC107695807 coding downstream 156122 16024223 ~ 16038514 (+)
dhh dhh,LOC107708800,LOC107571723,LOC107716210,LOC107681955,LOC107563640,LOC107695806 coding downstream 175159 16043260 ~ 16048908 (+)
kmt2d kmt2d,LOC107681934,LOC107695802,LOC107716211 coding downstream 182464 16050565 ~ 16083002 (+)
G158074 scn8aa,LOC107695818,LOC107563626 non-coding upstream 34106 15818461 ~ 15827933 (+)
G158068 NA non-coding upstream 115750 15745117 ~ 15746289 (+)
G158056 LOC107695735,LOC107745457,LOC107571782,LOC107668551,LOC107570234 non-coding upstream 120378 15740636 ~ 15741661 (+)
G158061 NA non-coding upstream 142033 15717790 ~ 15720006 (+)
G158030 galnt6,LOC107695825,LOC107568460,LOC107745475,LOC107570209,LOC107668563 non-coding upstream 246241 15611607 ~ 15615798 (+)
G158110 NA non-coding downstream 12562 15880663 ~ 15881892 (+)
G158115 NA non-coding downstream 28546 15896647 ~ 15949421 (+)
G158113 NA non-coding downstream 66838 15934939 ~ 15937871 (+)
G158117 NA non-coding downstream 96651 15964752 ~ 15965764 (+)
G158423 NA non-coding downstream 671435 16539536 ~ 16539832 (+)
G157620 NA other upstream 557489 15300704 ~ 15304550 (+)
G157656 megf11,LOC107583869,LOC107672222,LOC107596974,LOC107686294 other upstream 865894 14992350 ~ 14996145 (+)
LOC122328907 mef2d,LOC107741762,LOC107549240,LOC107717782,LOC107597970,LOC107663114,LOC107689865 other upstream 1103822 14725910 ~ 14758217 (+)
LOC122328914 szrd1,LOC107673108,LOC107716129,LOC107737539,LOC107687433,LOC105899027 other upstream 1147484 14712147 ~ 14714555 (+)
LOC122328906 LOC107673074,LOC107737500,LOC107695835,LOC107716175,LOC107574686,LOC107564653,LOC107576192 other upstream 1175421 14680860 ~ 14686618 (+)
G158152 rps26,RPS26,rps26l,LOC107563646 other downstream 115569 15983670 ~ 16083529 (+)
G158162 dnajc22,LOC107708801,LOC107716089,LOC107563648,LOC107571715,LOC107695753 other downstream 154098 16022199 ~ 16023394 (+)
LOC122328571 kmt2d,LOC107681934,LOC107716211,LOC107695802,LOC107563643 other downstream 713869 16581970 ~ 16607408 (+)
G158446 atf7a,LOC107563644,LOC107570410,LOC107745462,LOC107681998 other downstream 753097 16621198 ~ 16664314 (+)
LOC122328551 atf7b,atf7a,LOC107711055,LOC107585125,LOC107740570,LOC107667392,LOC107673513,LOC107582698,LOC107681998,LOC107716199,LOC107745462,LOC107570410,LOC107563644,LOC107695816 other downstream 767345 16635446 ~ 16669648 (+)

Expression


Co-expression Network