pard6b (pard6b,LOC107737628,LOC107560924,LOC107657018,LOC107712746,LOC107562464,LOC108436329,LOC107671939)


Basic Information

Item Value
gene id pard6b
gene name pard6b,LOC107737628,LOC107560924,LOC107657018,LOC107712746,LOC107562464,LOC108436329,LOC107671939
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 11490166 ~ 11507285 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225019.1
gagagagagagagagagaggcgcgCGCGCTGGGGCAGAGTTTAGAGCACGTTCAGTTGACAGGCGTCGCCGTTGCTACTCGATTCCGATAACAACACAAGCGAAGGCACGGAGCTGTCGCGAGATACGCGCCTTTAACTGGATTAAGCCGAGAAAAGCCGTTTTGGACGGACCGAGCCCAAGGCGGATGAGCGCAGCCCGCGGGAGGGCAAGTGTGTTTCTGCGGCGGGGTCCAGTCAGCGAAAGATGAACAAAAACCACCGAGTGCCGAGCAACCGAACTCTGAACGCCGTGGAGGTGAAGAGCAAGTTTGGGGCAGAATTTAGGCGTTTCTCTTTGGACCGGTCCAAGCCGGGGCGCTTTGATGAGTTCTATGGCTTGCTGCAGCACGTGCACCGGATCCCCAACGTCGATCTGCTTGTGGGCTACGCCGATGTCCACGGGGACCTGCTGCCAATCAACAACGATGACAACTACCATAAAGCGATCTCCATGGCGGCGCCCCTTCTCCGTCTCTTCTTGCAGCGGAAAGCAGAGGAGGCCGATTACTCTGCATTCGGCGCGGACACTGTGACCCGTAAGAAGACCCCTGCAGCGCTTGCAGCCGTCCTCCTTCGGCCGGACACCAACAAGAAGAAACCTCCTATCATCATCAGCCTGCCCAAAGATTTCCGGCCAGTGTCCTCCATCATCGACGTAGACATCCTCCCAGAGACCCACCGCCGCGTCCGCCTCTACAAGCACGGTCAGGAGAAACCCTTGGGCTTCTACATTCGCGACGGATCCAGCGTCCGTGTTACTCCCCAAGGCCTGGAAAAGGTCCCGGGCATCTTCATCTCCCGCATGGTCCCCGGAGGCCTGGCGGAGAGCACGGGACTGCTGGCCGTCAACGACGAGGTGCTCGAAGTCAACGGCATCGAGGTGAGTGGAAAGTCTTTGGACCAAGTAACGGACATGATGATCGCTAACAGCCACAACCTCATTATAACCGTCAAACCGGCCAATCAGCGCAATAACGTGGTACGCAGCAGCGGAGGCGGCAGCTCAGGGCGATCTTCGGACAGCAGCACCAGTTTTTATGGTTACTCGACACCGGGTTCGATGGCGATGACCCCATCCCATATTATCCAGAACTATGAGCCGGACGAGGAgagcgaggaggaggaggaggatctTGTGATCGAGGCGGACGGAGGGGCTAAACTTATTCCGCAGGCAGGGGCACGGGCGACGGCCAGCACCAGCATGCCCGTCCTGCCCAGATACGAGCCCCACCTCGACCTCCGCCCCTCAAATGGTACCATGGCAAGCAGCGTGAGCGTGGGTTCTCTGAATGCCCGTGACAGGGGTGTAGAAGGGCGAAATCTTGAGGAGGAGGGCACAGTCATtacactgtaaacacacacacacacagcatataatcacacacacatgccagtACGTACTCTTGTGTGCCATAGGACTGAAAATGCATGTCCAGGACCAAAAGAGAAGACGCAGCACTTCTCTGTAACCACCAGGTAGTTCTTATCATCAAACCCATGGAGAGCAGCACAGCACCAAAAATAGCTGCTTCTGGAGTAATAATGAACTTCCTGAGTCAGTGCGATTGAATGAATGCAGACGGCGCTGTATGAGTCATGACaatctttttttactttgacaACCACTCCCTTCAGAGCCACGAGGCTTGAGCGTTATCAGAGAACAAAGTACAATGGGTTTTACCCATCCTCtgtgttaccatggtaactgAGTCTGAGCTACAGAACTTCAGACAGAACTGAAATATGCTCTTCATCCCTTTCCCGTCTGCAACACTAATACTCTCAGCTTACCGATTCTTTGTGGTTTTCAAGGGAATCGTGAACCTTTTGAGGGGCTTGAGTGAATGTTTTGGAGAAATTTTCTCGTGAGTGGACAGTTGTAGACTGCTGCAGATGTCTTTTATTATCTCAGAAGTTTTTAATCATAGccaaaaagacaaatgaataatgtcatatttttcaTACTGATATGTTTTATTGGTATCGCTTATATTTCTTTATGACAAGGGCTATCATCCTGCTCTTTGCTACCTGTGGTTTATTTTACCCATTAATCTTTACTTGATAACCCTATCTGGGGACTTGGAATACATAATTATCATcaataatgtttcaaaagagTGCTCTGATGTGGACACTTGGATGTTTCATTTATGAAGAGCGTCTCTACTGTCACACTTTTCACAAAGGTTCAGCTCGTTAACATTAGATCagccaaaaatgtcattttatatgtttctttcttctgtggcgCATAAAAGCATATATTCATAGATATTTTCATACACAAAGAATTCAGgtaaatgacaaaattgactttttggggggtgaactatacagtacatttaatgcattaggCATCataactaactattaataatatttttacaatgttaaaGTTCATTTCTGCATACActaaaattgactttttaacattttaaagtagtttaaataaacattagatAGTGTATTATGAGTCATGAACAATAGTATATGTATGAATCAACAATTACCAGAAtcaataaaatctgtaaaaatggCACATAAcgcattaatgttaacaaattgaACCTCTTTAAAGTGTTACCGCTAACAGTAAGTGTTGCAGTCAAATTATGGAAAAACAACTCTTATTTTGTAGTGAATTACTATTGAATATATACCAAAATATTCAgtatctttttgtgtgtgtgtgtgtgtcagccgAGTACCAGCCAAACCCTTCACTAAGTAAGCAGAAGTATGGGACAGACATGgatctttttttcagttcagcTGATTGAAATGTGTTGTGAACTCATgtcaaaaatgcacaattaatcATATTGCCATCTAACTTCCATACCCTTTACTCCGTGTACGGTAAAGTGAGCTCTTACTACTTAAGTGATAATTATGACTAAAAATGACCTCTTATACGAATAACTGGACAACTGAACAAATGTTATGACTTTGAAAGCATTCCTTTTAAGTTCAAGTGACTGTAGGTACACTGTAGGTACACTCTTCCCTTTTCGTCCTTATACATACATGTCATAATGATATGCATGATGTCACAGCCGTAAGCTGCAATACGAACCTCTGAGAtctcaaagtgtgtgtgtgagtggataCACTGGGAGAGACCGATGGGAGACAGATGTGCCTACGCTCTTACAGTTAGGACCTGCTGTTGGAGATTTAGCCGAAGTAGCCTTTCATTATCCCAGCTTTTTCTCGCTTCATAATAGCTGAAGAGAATCGCTTTTCGTGGCACTTACGTTACCAAACCTGCTCGGAGTAGCACACAAGCACTGTAGCTGTGATCATACACACCACTTCATCCTGATCGTTCATCTTTTTGGTACAAACGACATATTGAATGGAGTCTTTAGctgtgttaatttatttttatattaaccaCTACATACGATTTGGGATTGTAACCACagaaggtttatttattttaaaatagactaTGTATTTTTACTTGCTTTGTTTTAGCTGACATAAAAACCTCATAATtctgatacttttttttttcatctctacAAAATGGTGTTCTAATTTTTTCCACTAGCATCTTTGGTGGAACTTAATGCTCAGACTCTTAGGGGGTGAATAGAAATATGAAGAATAACTTGCTATTTTCCAAACTGTGAATATCTTTGCATTTCTAAAAGAGACCATATATCTTTGAGCACCTGCattgagagaaagagatagaaaCGGGCTTTCAAGCATTATCATTCATGTgtcaatttctctttttttgataATAAGCTTGCCAGATAAATCTTAAGGTATAGATTTGTACTGAAATTGTCAGTATTTTCTTAGTACTACATGATGTAAATTTGTTTCACATAATGAAACTTTTAAAAGGATAAATACTATATTAAGACATAGATGCACATGTATTATAGTCGAATCTTGGATGAAATAAACTAATATGTAGAAAATGA
>XM_043225020.1
gagagagagagagagaggcgcgCGCGCTGGGGCAGAGTTTAGAGCACGTTCAGTTGACAGGCGTCGCCGTTGCTACTCGATTCCGATAACAACACAAGCGAAGGCACGGAGCTGTCGCGAGATACGCGCCTTTAACTGGATTAAGCCGAGAAAAGCCGTTTTGGACGGACCGAGCCCAAGGCGGATGAGCGCAGCCCGCGGGAGGGCAAGTGTGTTTCTGCGGCGGGGTCCAGTCAGCGAAAGATGAACAAAAACCACCGAGTGCCGAGCAACCGAACTCTGAACGCCGTGGAGGTGAAGAGCAAGTTTGGGGCAGAATTTAGGCGTTTCTCTTTGGACCGGTCCAAGCCGGGGCGCTTTGATGAGTTCTATGGCTTGCTGCAGCACGTGCACCGGATCCCCAACGTCGATCTGCTTGTGGGCTACGCCGATGTCCACGGGGACCTGCTGCCAATCAACAACGATGACAACTACCATAAAGCGATCTCCATGGCGGCGCCCCTTCTCCGTCTCTTCTTGCAGCGGAAAGAGGAGGCCGATTACTCTGCATTCGGCGCGGACACTGTGACCCGTAAGAAGACCCCTGCAGCGCTTGCAGCCGTCCTCCTTCGGCCGGACACCAACAAGAAGAAACCTCCTATCATCATCAGCCTGCCCAAAGATTTCCGGCCAGTGTCCTCCATCATCGACGTAGACATCCTCCCAGAGACCCACCGCCGCGTCCGCCTCTACAAGCACGGTCAGGAGAAACCCTTGGGCTTCTACATTCGCGACGGATCCAGCGTCCGTGTTACTCCCCAAGGCCTGGAAAAGGTCCCGGGCATCTTCATCTCCCGCATGGTCCCCGGAGGCCTGGCGGAGAGCACGGGACTGCTGGCCGTCAACGACGAGGTGCTCGAAGTCAACGGCATCGAGGTGAGTGGAAAGTCTTTGGACCAAGTAACGGACATGATGATCGCTAACAGCCACAACCTCATTATAACCGTCAAACCGGCCAATCAGCGCAATAACGTGGTACGCAGCAGCGGAGGCGGCAGCTCAGGGCGATCTTCGGACAGCAGCACCAGTTTTTATGGTTACTCGACACCGGGTTCGATGGCGATGACCCCATCCCATATTATCCAGAACTATGAGCCGGACGAGGAgagcgaggaggaggaggaggatctTGTGATCGAGGCGGACGGAGGGGCTAAACTTATTCCGCAGGCAGGGGCACGGGCGACGGCCAGCACCAGCATGCCCGTCCTGCCCAGATACGAGCCCCACCTCGACCTCCGCCCCTCAAATGGTACCATGGCAAGCAGCGTGAGCGTGGGTTCTCTGAATGCCCGTGACAGGGGTGTAGAAGGGCGAAATCTTGAGGAGGAGGGCACAGTCATtacactgtaaacacacacacacacagcatataatcacacacacatgccagtACGTACTCTTGTGTGCCATAGGACTGAAAATGCATGTCCAGGACCAAAAGAGAAGACGCAGCACTTCTCTGTAACCACCAGGTAGTTCTTATCATCAAACCCATGGAGAGCAGCACAGCACCAAAAATAGCTGCTTCTGGAGTAATAATGAACTTCCTGAGTCAGTGCGATTGAATGAATGCAGACGGCGCTGTATGAGTCATGACaatctttttttactttgacaACCACTCCCTTCAGAGCCACGAGGCTTGAGCGTTATCAGAGAACAAAGTACAATGGGTTTTACCCATCCTCtgtgttaccatggtaactgAGTCTGAGCTACAGAACTTCAGACAGAACTGAAATATGCTCTTCATCCCTTTCCCGTCTGCAACACTAATACTCTCAGCTTACCGATTCTTTGTGGTTTTCAAGGGAATCGTGAACCTTTTGAGGGGCTTGAGTGAATGTTTTGGAGAAATTTTCTCGTGAGTGGACAGTTGTAGACTGCTGCAGATGTCTTTTATTATCTCAGAAGTTTTTAATCATAGccaaaaagacaaatgaataatgtcatatttttcaTACTGATATGTTTTATTGGTATCGCTTATATTTCTTTATGACAAGGGCTATCATCCTGCTCTTTGCTACCTGTGGTTTATTTTACCCATTAATCTTTACTTGATAACCCTATCTGGGGACTTGGAATACATAATTATCATcaataatgtttcaaaagagTGCTCTGATGTGGACACTTGGATGTTTCATTTATGAAGAGCGTCTCTACTGTCACACTTTTCACAAAGGTTCAGCTCGTTAACATTAGATCagccaaaaatgtcattttatatgtttctttcttctgtggcgCATAAAAGCATATATTCATAGATATTTTCATACACAAAGAATTCAGgtaaatgacaaaattgactttttggggggtgaactatacagtacatttaatgcattaggCATCataactaactattaataatatttttacaatgttaaaGTTCATTTCTGCATACActaaaattgactttttaacattttaaagtagtttaaataaacattagatAGTGTATTATGAGTCATGAACAATAGTATATGTATGAATCAACAATTACCAGAAtcaataaaatctgtaaaaatggCACATAAcgcattaatgttaacaaattgaACCTCTTTAAAGTGTTACCGCTAACAGTAAGTGTTGCAGTCAAATTATGGAAAAACAACTCTTATTTTGTAGTGAATTACTATTGAATATATACCAAAATATTCAgtatctttttgtgtgtgtgtgtgtgtcagccgAGTACCAGCCAAACCCTTCACTAAGTAAGCAGAAGTATGGGACAGACATGgatctttttttcagttcagcTGATTGAAATGTGTTGTGAACTCATgtcaaaaatgcacaattaatcATATTGCCATCTAACTTCCATACCCTTTACTCCGTGTACGGTAAAGTGAGCTCTTACTACTTAAGTGATAATTATGACTAAAAATGACCTCTTATACGAATAACTGGACAACTGAACAAATGTTATGACTTTGAAAGCATTCCTTTTAAGTTCAAGTGACTGTAGGTACACTGTAGGTACACTCTTCCCTTTTCGTCCTTATACATACATGTCATAATGATATGCATGATGTCACAGCCGTAAGCTGCAATACGAACCTCTGAGAtctcaaagtgtgtgtgtgagtggataCACTGGGAGAGACCGATGGGAGACAGATGTGCCTACGCTCTTACAGTTAGGACCTGCTGTTGGAGATTTAGCCGAAGTAGCCTTTCATTATCCCAGCTTTTTCTCGCTTCATAATAGCTGAAGAGAATCGCTTTTCGTGGCACTTACGTTACCAAACCTGCTCGGAGTAGCACACAAGCACTGTAGCTGTGATCATACACACCACTTCATCCTGATCGTTCATCTTTTTGGTACAAACGACATATTGAATGGAGTCTTTAGctgtgttaatttatttttatattaaccaCTACATACGATTTGGGATTGTAACCACagaaggtttatttattttaaaatagactaTGTATTTTTACTTGCTTTGTTTTAGCTGACATAAAAACCTCATAATtctgatacttttttttttcatctctacAAAATGGTGTTCTAATTTTTTCCACTAGCATCTTTGGTGGAACTTAATGCTCAGACTCTTAGGGGGTGAATAGAAATATGAAGAATAACTTGCTATTTTCCAAACTGTGAATATCTTTGCATTTCTAAAAGAGACCATATATCTTTGAGCACCTGCattgagagaaagagatagaaaCGGGCTTTCAAGCATTATCATTCATGTgtcaatttctctttttttgataATAAGCTTGCCAGATAAATCTTAAGGTATAGATTTGTACTGAAATTGTCAGTATTTTCTTAGTACTACATGATGTAAATTTGTTTCACATAATGAAACTTTTAAAAGGATAAATACTATATTAAGACATAGATGCACATGTATTATAGTCGAATCTTGGATGAAATAAACTAATATGTAGAAAATGA

Function

symbol description
pard6b Predicted to enable protein kinase C binding activity. Predicted to be involved in centrosome cycle; establishment or maintenance of cell polarity; and regulation of cellular localization. Predicted to act upstream of or within cell division. Located in apical plasma membrane. Is expressed in otic placode. Orthologous to human PARD6B (par-6 family cell polarity regulator beta).

NR:

description
PREDICTED: partitioning defective 6 homolog beta

GO:

id name namespace
GO:0016324 apical plasma membrane cellular_component

KEGG:

id description
K06093 PARD6; partitioning defective protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225019.1 True 3990 mRNA 0.44 3 11490166 11507285
XM_043225020.1 False 3985 mRNA 0.44 3 11490166 11507283

Neighbor

gene id symbol gene type direction distance location
arfgef2 arfgef2,LOC107671990,LOC107737629,LOC107562465,LOC107741338,LOC108436330 coding downstream 1736 11466356 ~ 11488430 (-)
bcl2l1 bcl2l1,LOC107560925,LOC107737630,LOC107671991,LOC107741328,LOC107657020,LOC107576469 coding downstream 25256 11446999 ~ 11464910 (-)
wu:fa11c10 wu:fa11c10,LOC107672043,LOC107737632,LOC107560922,LOC107562466,LOC107741327,LOC107657022 coding downstream 61419 11411884 ~ 11428747 (-)
nsfl1c nsfl1c,LOC107737635,LOC107560918,LOC107741325,LOC107562467,LOC107657023 coding downstream 94693 11390561 ~ 11395473 (-)
trpc4apb trpc4apb,LOC107737634,LOC107560917,LOC107672047,LOC107741324,LOC107562468 coding downstream 103443 11379548 ~ 11386723 (-)
LOC122328724 ebp,LOC107672060,LOC107712744,LOC107657016 coding upstream 8852 11516137 ~ 11517702 (-)
trnah-gug_32 NA coding upstream 10725 11518010 ~ 11518081 (-)
oard1 oard1,LOC107672023,LOC107712742,LOC107657014 coding upstream 22752 11530037 ~ 11531810 (-)
guca1b guca1b,LOC107657012,LOC107562461,LOC107560929,LOC107672062 coding upstream 25356 11532641 ~ 11536011 (-)
LOC122329255 klhdc8b,LOC107712738,LOC107671938,LOC106572099,LOC107570270 coding upstream 37245 11544530 ~ 11630976 (-)
LOC122328925 NA non-coding downstream 113478 11376177 ~ 11376688 (-)
G156785 NA non-coding downstream 136338 11353159 ~ 11353828 (-)
G156762 NA non-coding downstream 245346 11242600 ~ 11244820 (-)
G156759 NA non-coding downstream 327147 11162664 ~ 11163019 (-)
G156726 LOC107737655 non-coding downstream 414205 11071410 ~ 11075961 (-)
G156812 NA non-coding upstream 32338 11539623 ~ 11540045 (-)
G156962 NA non-coding upstream 255155 11762440 ~ 11763023 (-)
G156971 NA non-coding upstream 274282 11781567 ~ 11782366 (-)
G156972 NA non-coding upstream 286318 11793603 ~ 11851710 (-)
G156978 NA non-coding upstream 547961 12055246 ~ 12061368 (-)
G156746 NA other downstream 384943 11100744 ~ 11105223 (-)
LOC122328798 fkbp1ab,fkbp1a,LOC107707744,LOC107657066,LOC107747971,LOC108435222,LOC107559476,LOC100705189,LOC105013763,LOC101476936 other downstream 812016 10675680 ~ 10678150 (-)
ankrd52a ankrd52a,ankrd52,LOC107594018,LOC107756410,LOC107549041,LOC108432261,LOC107671831,LOC107723718 other downstream 1104199 10218473 ~ 10385967 (-)
LOC122328546 rpl10 other upstream 234115 11741400 ~ 11746620 (-)
LOC122329329 NA other upstream 237977 11745262 ~ 11745395 (-)
atp2b3b atp2b3b,atp2b3,LOC107737604,LOC107712727,LOC107672007,LOC107593407 other upstream 256424 11763709 ~ 11857968 (-)
si:dkey-93l1.9 si:dkey-93l1.9,LOC107699586,LOC107593449,LOC107671978,LOC107699561,LOC107576394,LOC107737609 other upstream 292637 11799922 ~ 11801632 (-)
G156985 NA other upstream 415559 11922844 ~ 11924650 (-)

Expression


Co-expression Network