si:ch211-210c8.6 (si:ch211-210c8.6,LOC107756419,LOC107598584,LOC105906836,LOC106567173)


Basic Information

Item Value
gene id si:ch211-210c8.6
gene name si:ch211-210c8.6,LOC107756419,LOC107598584,LOC105906836,LOC106567173
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 17349249 ~ 17354410 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225032.1
TGGCGTTTTTACACGCGTCTGTATTCTGTCCGAACACACCTTCTTCCACAGTCATAAATCATAAACTTCTTATCTTTCCAGGCCATAACTTGAACATCATGGCGGCCCCTGAGTCACATTTTATAGTGAATGTTTATGGAGAacactgaaattattttatgttagaCTAATATTATAGTGCACTATTCATCAATTTTTCaaaccattattattatatcatattatgaATTAACATTAAACTGAATTTAACTGAATAGTGACAACATTGATTTCTGTGGGCCCTTCAGCTGAAATTGAAATATCTATGAATTGCAGCATTAACATTGTTATTTTCCATGTATTTCTGAGAAGCTGCTTCTAAACAATCTATATCAAAGagagcactatataaataaatttaagaaaTTAGATAATTAAGTTATTTTCTATCATGGGTAACATATgctttgtacatttttcttttctctttaagCAGCAAGACATAAAAAGCGATACAGATATTTTCAAACTACACTTCCCATAAGCCACAGCACATACGGAAGACGCGTTGGCCACGCCCCCTCCTTGCCACAAGTGTGGATGTTACGAACTTTgctctgctgtttttattgaaCTCGGGGAACATTTCTGCTTCTTCGGGACCTGCTGGACATGAACATGGGAAGCGTGTTCGCCAAGTGTGCTGTCACCGACCTGACCATTCAGTGGGTCGGGTGGGCGCTAGCGTCTGCTTTCAAAACTGAAAAGTTTTACGACTTGGCAGGATCTGGTACTTTCTTATTGCTGGCTAATCTGAGTCGTATGTGGGGCGGAAATGGCCACTTTAGACAGAACGTACAAACTGGACTCGTCACTGCTTGGAGTCTGAgGCTCGGGACATTTCTCTTTCTTAGAATCCTAAAGGAAGGACAAGACCGGAGATTTAACAATGTCAGAGACAGCCCTGGGACATTCTTTGTGTACTGGACCATGCAAGctTTGTGGGTCTTTATCACCCTGTTGCCCACCCTAATTTTAAACAGTGAGAGAAGAGATGAGCCCCTGGGCCCACGTGACTACATCGGCTGGGGAATATGGGGGTTGGGTTTTGCTACAGAGGCCATTGCCGACCAACAGAAGTGGAATTTTAAGAGTGATCCAGATAATGCTGGAAGGTTTATTCATCATGGACTGTGGGCATACAGCAGACATCCAAACTATTTGGGGGAGATCCTGCAATGGTCGGGCCTGTTCCTGTCCGCTTCCTCCGTCATGCGTGGACCTCAGTACCTCAGTGCACTTTCTCCTCTCTTCGTCTGGTTCTTACTGAGACACATTAGCGGGATCCCCATCCTTGAGAAACAAGCTATGAAAAAGTGGGGCTCAGATCCCGCTTTCCAGAGATACACCAGGAACACTCCGCTCCTATGGCCCTTTCCCAAATTGAAGGGAGAATGAATTGTTTACACAACTTGCATAATTGCTTGTGCTGACAAATGAGCTCTTGTGAATATCTTGATATATAGATACAATTATAGTGTAGAGAATAGTTTAtcccaaaatgacaattctcTGAATATTTTCTCATTCAAGatggccatccaagatgtagcagtttttttttccttctgcccaacagatttggaaaaattttgcattacatcacttgcttgCCAACAgatgaatgggtgccatcagaacaagagtccaaacagctgataaaatctTCACAATAATCCACCCCCTGACTCTAGTCAATTATTGTCTgtgaagcaaaaacatttttttttttaaacaaatccataattaagatgtttaaaatgaaaaagttccTCACATCAAAATTCACTGTAAATAGTGCTTGAttgttttcacatttcattCCTGATTGAgatgaggctttttttttctccaaaatgtaacaatattatGGAGATGTtcaaattcattacatttataaggcttttcacattattacattaattgaTAGACTGGTGATTGTTATTATAAAGCCGTTCAGACttttattctgatggcacccattcactgcaaaagaaccattgatgagcaagtgctaaattttaaaaaaaaaatgtcatctcGTCTGAtttgaggttgagtaaatttCATCcaaattgacatttttaggtaaatactttctttaaaataaatatatatgtccctgtttataatttctttgtaatatttcagtaCAGTTGTAATCCACAAGGACTTCAAGAATTCTATCACTACTACTTCTGCATTAATTCAACTACCCAGACTTATATTCTGGCACTCTTTGTGCCTCAGTGAATTTGTTTTGTGAACATTTAAGTTTTGCCACTTCAGTCTAACTCTAAATCTCAATGCAATGTAAAAGACAGACACAAAGGACttgcaataaatgaatgtattttacaaaCGGCACACCACTCAAACTGAAAAGCAACCGGGTTGATAAATCAGCTTCAATGTTTAACACAGTAAACAACTGCCATTTTATAACAATGAAAGCTTGGCAGTTTAGTGCTGCACAACTACTGGTCCAGAAAACGTTGCTCCACTGAAAGGAAAATGACTAATTATATACAGTAAAGAGTGTCCAATCAGTGTAATCTTTTATAAAATTCAATAAAGTACACTAGATCCTTCAAAATCA

Function

symbol description
si:ch211-210c8.6 Predicted to enable oxidoreductase activity, acting on the CH-CH group of donors. Predicted to act upstream of or within lipid metabolic process. Predicted to be located in endoplasmic reticulum. Predicted to be integral component of membrane. Predicted to be active in membrane.

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225032.1 True 2638 mRNA 0.38 5 17349249 17354410

Neighbor

gene id symbol gene type direction distance location
dazap2 dazap2,LOC107715036,LOC107671873,LOC107756418,LOC107697974,LOC107594003,LOC107598568 coding upstream 10313 17333245 ~ 17338936 (+)
rapgef3 rapgef3,LOC107723737,LOC107671875,LOC107598495,LOC107697977,LOC107756413 coding upstream 134757 17180872 ~ 17214492 (+)
LOC122328573 NA coding upstream 187013 17155195 ~ 17162236 (+)
LOC122328394 asb8,LOC107745463,LOC107681993,LOC107570421,LOC107563629,LOC107695815 coding upstream 729546 16617169 ~ 16619703 (+)
LOC122329124 masp2,LOC107708846,LOC107571531 coding upstream 810228 16529872 ~ 16539021 (+)
LOC122329248 LOC107671862,LOC107756420,LOC107697970,LOC101886435,LOC107594036,LOC108425513 coding downstream 7953 17362363 ~ 17402848 (+)
cs cs,LOC107707042,LOC107715034,LOC107671863,LOC107697968 coding downstream 51048 17405458 ~ 17416655 (+)
LOC122328977 LOC107671833,LOC107715029,LOC107598604,LOC107707038,LOC107697965,LOC107593998 coding downstream 74047 17428457 ~ 17432713 (+)
fam50a fam50a,LOC107707036,LOC107598596,LOC107671832,LOC107697964,LOC107715033 coding downstream 84107 17438517 ~ 17444127 (+)
si:ch211-207e14.4 LOC107707035,LOC107697962,LOC107598648,LOC107671899,LOC107594033 coding downstream 90112 17444522 ~ 17452097 (+)
G158550 NA non-coding upstream 38457 17308713 ~ 17310792 (+)
G158543 csrnp2,LOC107671888,LOC107598537,LOC107715040,LOC107594006,LOC107756414 non-coding upstream 52791 17294071 ~ 17296458 (+)
G158542 NA non-coding upstream 57706 17289944 ~ 17291543 (+)
G158527 NA non-coding upstream 168792 17179431 ~ 17180457 (+)
LOC122328456 NA non-coding upstream 195917 17151981 ~ 17153332 (+)
G158569 NA non-coding downstream 3954 17358364 ~ 17405040 (+)
G158579 NA non-coding downstream 65616 17420026 ~ 17420643 (+)
G158573 NA non-coding downstream 66312 17420722 ~ 17422300 (+)
G158726 NA non-coding downstream 456175 17810585 ~ 17810812 (+)
G158754 LOC107714950,LOC107664163,LOC107706981,LOC107563148,LOC107697872,LOC107599688 non-coding downstream 568160 17922570 ~ 17923679 (+)
G158523 NA other upstream 177410 17105498 ~ 17171839 (+)
G158524 NA other upstream 266594 17082205 ~ 17082655 (+)
G158486 NA other upstream 616365 16731346 ~ 16732884 (+)
LOC122328551 atf7b,atf7a,LOC107711055,LOC107585125,LOC107740570,LOC107667392,LOC107673513,LOC107582698,LOC107681998,LOC107716199,LOC107745462,LOC107570410,LOC107563644,LOC107695816 other upstream 679601 16635446 ~ 16669648 (+)
G158446 atf7a,LOC107563644,LOC107570410,LOC107745462,LOC107681998 other upstream 684935 16621198 ~ 16664314 (+)
si:ch211-148l7.4 LOC107715028,LOC107671835,LOC107593999,LOC107697967,LOC107706980 other downstream 68710 17423120 ~ 17426633 (+)
snrpg snrpg,LOC107671841,LOC107594056,LOC107598637,LOC107706979 other downstream 72323 17426733 ~ 17428031 (+)
camk2n1b camk2n1b,LOC107664141,LOC107714949,LOC107706982,LOC107563146,LOC107599136 other downstream 456659 17811069 ~ 17856534 (+)
G158789 march9,LOC107664138,LOC107593952,LOC107697857,LOC107714987,LOC107706970,LOC107599679,LOC105912704 other downstream 702704 18057114 ~ 18058917 (+)
fam110c LOC107714930,LOC107664105,LOC107593987 other downstream 1287084 18641494 ~ 18644692 (+)

Expression


Co-expression Network