LOC122328942 (pofut1,LOC107707748,LOC107681402,LOC107558235,LOC107747492,LOC107690856)


Basic Information

Item Value
gene id LOC122328942
gene name pofut1,LOC107707748,LOC107681402,LOC107558235,LOC107747492,LOC107690856
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 7862203 ~ 7866387 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225052.1
tgcattgtgggatagcGAATGATCAGCGATGGCGGCCAGACTAAAGCGTCTGAAACTTTTCGTGGTAACTTATTTGCATGTAACGTTCCTGTCTTTGCACGCGTTTACCGACGCGGCGGACGTGGCGTGGGATGAAAACGGATACATCCTGTACTGTCCGTGCATGGGTCGGTTCGGAAACCAAGTGGATCATTTCCTCGGATCGCTGGCTTTTGCTAAAATGCTGAACCGAACGCTCGCGGTTCCGCCGTGGATTGTTTACCGGCATCATTCCCCgccttttcaaaatGTGCATGTTCCCTACAGTGAGTATTTCCAATTGGAGCCAGTGAAGCAGTACCACCGTGTGGTGAGTCTGGAGGACTTCATGGAGCACTTGGCTCCTAAGCACTGGCCCCCGGGTCAGAGAGTGGCCTACTGCTTCGAATCTGCAGCTCAGAGGAGCGTAGACAAAAAGAGCTGTCCCATGAAGGACGGAAATCCTTTCGGCCCCTTTTGGGACCATATCGGAGTCGACTTTGATGGCTCCGTTCTCTTCGGAGGACTGTCGTTCAGCTCGTACTATCAGCCTCACTGGATAAAAAGGTTTCCTCCGAAAGAGCATCCAGTTCTCGCTCTTCCAGGAGCCCCCGCGCAGTTCCCCATTCTAGAGGAGCACATCGGACTGCAGGAGTATGTGGTGTGGTCTGAAAAAATGGTACAGGAAGGAGAAGACCACATCAGAAGCCTGCTAAACAGACCCTACGTGGGAATTCATCTGAGAATCGGCTCGGACTGGCAAAATGCCTGCAAGCTTCTGAAGTCGGGTGAAACCGGTCCTCACTTCATGGCATCTCCGCAGTGTGTGGGATACGAGCGCCAGACCGCCCTGCCGCTGACCATGGACATGTGTTTACCAGACCTGCCTGAGATCCGCCGCGCCGTCAAGCTCTGGGTGAAGATCACCAACGCTCAGTCCGTTTACATCGCCACCGACTCCGAATCACACGCCGCAGAGATTCAGAGACTCTTCAGGGGCAAGGTGAAGGTGGTGAGCTTGCAGCCGGACACCGCTCAGATCGACCTGTATGTCCTCGGTCAGGCCGATCACTTCATCGGCAACTGCGTTTCGTCTTTCTCGGCCTTCGTTAAAAGGGAGAGAGACGTTCGCGGGAGACCCTCGTCGTTCTTTGGGATGGACTACCTgggaaaaggaaaggaaaggaggAGCTCTGATAAAAATGAAGATGTTACGTTTTTTGTAACTGAAGGGTGGTTGAGGTTTTGCATGTTTCAGGTGTCTGGGCAGATTTTGGACAAGAACGTTTGGATAGGGTTCACGTAATCAAATGAAGGGAGAGCAAGATTTAGTACCTTGATAGTTTCTCTGGATGCTGCATTTCTCCCACGATGCACTACTACATTTACTGTGAGCAACCGTGATATCATTGGTATTTTTGTACTGGAACGTTTGCATTATTTGAGGATGTAAAAACCGCCCCCTGTGAGGGCAGAGTTATTATACTGGAGACGGGTCGAGCGTTAATggttggaaatgtttttttccgcTCTTTATAACTGCAGGCCATTTAAGACCTCCAGAGGCATCCAGATGTGCAGTGCTCTAATGAATGCTGAAAATGAACATGTGTGTCACTATTTAAAGAATGTGTGTCACAGGCTTTCTAATGTCTTAGTAATGCATGGTGacattgtttttgaaagtcagTGCGAAACCAAACTGCAGAAacgttttataaatgttttaagatgtacttattattaattttgtacaACTTTAAATGACATTCCTCAAGttagtttacaaataaaaatataacaagcagta

Function

symbol description
pofut1 Predicted to enable peptide-O-fucosyltransferase activity. Predicted to be involved in protein O-linked fucosylation and regulation of Notch signaling pathway. Predicted to act upstream of or within Notch signaling pathway and fucose metabolic process. Predicted to be active in endoplasmic reticulum. Human ortholog(s) of this gene implicated in Dowling-Degos disease. Orthologous to human POFUT1 (protein O-fucosyltransferase 1).

NR:

description
PREDICTED: GDP-fucose protein O-fucosyltransferase 1-like

GO:

id name namespace
GO:0046922 peptide-O-fucosyltransferase activity molecular_function

KEGG:

id description
K03691 POFUT; peptide-O-fucosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225052.1 True 1828 mRNA 0.49 7 7862203 7866387

Neighbor

gene id symbol gene type direction distance location
LOC122328943 kif3b,LOC107690851,LOC107558233,LOC107559485,LOC107681362 coding downstream 849 7854304 ~ 7861354 (-)
LOC122328712 kif3b,LOC107593268,LOC107721442,LOC107690993,LOC107697206,LOC107719402,LOC107690851,LOC107559485 coding downstream 29619 7822122 ~ 7832584 (-)
LOC122328356 pofut1,LOC107707748,LOC107681402,LOC107558235,LOC107747492,LOC107690856 coding downstream 73916 7784305 ~ 7788287 (-)
kif3b kif3b,LOC107690851,LOC107558233,LOC107559485,LOC107681362 coding downstream 79486 7774301 ~ 7782717 (-)
npbwr2b npbwr2,LOC107558229,LOC107727007,LOC571123,LOC107559472,LOC107705671,LOC108410549,LOC107666655 coding downstream 336702 7522064 ~ 7525501 (-)
tm9sf4 tm9sf4,LOC107681873,LOC107690854 coding upstream 55866 7922253 ~ 7932104 (-)
LOC122329207 hck,LOC107681869,LOC107707747,LOC107690859,LOC107747493 coding upstream 66056 7932443 ~ 7954995 (-)
gata5 gata5,LOC107681871,LOC107707745,LOC107747495,LOC107559469,LOC107690861 coding upstream 112504 7978891 ~ 7985474 (-)
trnai-uau_5 NA coding upstream 319510 8185897 ~ 8185988 (-)
trnai-uau_6 NA coding upstream 319808 8186195 ~ 8186288 (-)
G155669 LOC107747485,LOC107707759,LOC107559486,LOC107690852,LOC107558232,LOC100536777,LOC107681385,LOC108440950 non-coding downstream 9952 7819746 ~ 7852251 (-)
G155684 NA non-coding downstream 25665 7834562 ~ 7836538 (-)
G155670 LOC102294427,LOC107690852,LOC107681385,LOC108440950,LOC107559486,LOC100536777,LOC107747485 non-coding downstream 44832 7766248 ~ 7817371 (-)
G155629 NA non-coding downstream 377998 7483923 ~ 7484205 (-)
G155628 NA non-coding downstream 379711 7482027 ~ 7482492 (-)
G155698 NA non-coding upstream 106716 7973103 ~ 7973325 (-)
G155737 NA non-coding upstream 310312 8176699 ~ 8177518 (-)
G155759 NA non-coding upstream 440892 8307279 ~ 8382607 (-)
G155803 NA non-coding upstream 660015 8526402 ~ 8532927 (-)
G155825 NA non-coding upstream 758539 8624926 ~ 8625642 (-)
G155596 sox18,LOC107727030,LOC107681403,LOC107551552,LOC107666636,LOC107705673,LOC107571663 other downstream 583880 7276448 ~ 7278323 (-)
LOC122329304 ccm2l,LOC107666505,LOC107551511 other downstream 858680 6994167 ~ 7003523 (-)
LOC122328436 cables2b,LOC107681405,LOC107705686,LOC107551510,LOC107559848,LOC107726996,LOC107666605 other downstream 880242 6964742 ~ 6981961 (-)
ccm2l ccm2l,LOC107666505,LOC107551511 other downstream 994903 6858007 ~ 6867300 (-)
rps21 rps21,LOC107666483,LOC107681394,LOC106572905 other downstream 1039171 6766608 ~ 6823032 (-)
G155807 NA other upstream 679007 8545394 ~ 8551977 (-)
G155827 NA other upstream 759371 8625758 ~ 8628391 (-)
c23h1orf127 LOC107708840,LOC107570680 other upstream 1046675 8913062 ~ 8919770 (-)
sst6 LOC107681964,LOC107571825,LOC107695779,LOC107570713,LOC107681961 other upstream 1055177 8921564 ~ 8926751 (-)
ctnnbip1 ctnnbip1 other upstream 1213145 9079532 ~ 9097302 (-)

Expression


Co-expression Network