ssr4 (ssr4,LOC107671948,LOC107562474,LOC107737640,LOC107741342,LOC107657031,LOC107560913,LOC108436301)


Basic Information

Item Value
gene id ssr4
gene name ssr4,LOC107671948,LOC107562474,LOC107737640,LOC107741342,LOC107657031,LOC107560913,LOC108436301
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 11311561 ~ 11313590 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225073.1
GAGGTGACGTGTCTGTGCGCGTTTCATTGGGTGAAGGCTAGCTCTGCTCTCTTTCCGCAGGTTTGACTTGAGTAACGTTAGCGGTAGATTCAGCTGCCCGGGGACCGACACAATGAGAGTTATAACAGCGATTTTGGCTCTTTGTCTTAGCCTGTGTGCAGCCGAGACTTGCACAGACCCGGTCATTTCTCCGTCTTCGTACACGACGACAGACGCGCTCATCTCCTCCGAGACCGTCTTCATCGTCGAGTTGAGCCTGGCGTGTGCGAACGGAGCTCAGAGTGTTGCTCTCTATGCAGACGTCAATGGCAAACAGTTTCCTGTGACCAGGGGCCAAGATGTTGGCAAATACCAGgtctCATGGAGTGTCCCTCATAAGCAGGCCAGCTCAGGCACATATCAGGTCAAGTTCTTTGATGAGGAGTCTTACAGCACTCTAAGAAAGGCTCAAAGAAACAATGAAGACGTTGATGCAATCAAGCCTTTGTTCTCTGTCAATGTGGATCACAGGGGTGCATGGAGTGGTCCCTGGGTGTCTACTGAGGTCTTGGCTGCTCTGATTGGCATTGTGGTCTACTACCTGGCCTACAGCACCAAAAGTGCAATCCAGGCTTGAGATGATGAGTCAAGCCACCACGCTGTTCAAACTGGTCTTGAGGAATTCCCTATTCTGATGtttaatattcagatttaagTGCCATGGACAGCTTGGCTAAACCACGAGACCGGTTTGTTGCAGAGCTTGGAGAAAAATGTCAGTATGGACATTAATTATAACGGCGgtcatgttcattttttttcttttttttaaatctcgaatttaagaaataaaacttttttcagtTGTGGTATTAATGTTAAACTTCAGAAAGACAACGCCTGAGGTGGTTTACCTGTGACTTACCATCATAGTCCAGTTCTCTATTGTGAAGTGTCCCAAATATCAATGAAATTCATTGACTATGGGAATAAACAATTTCCTCAAAGTT

Function

symbol description
ssr4 Acts upstream of or within cellular response to estrogen stimulus. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be active in endomembrane system. Is expressed in several structures, including axis; endocrine system; hatching gland; notochord; and polster. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation Iy. Orthologous to human SSR4 (signal sequence receptor subunit 4).

NR:

description
PREDICTED: translocon-associated protein subunit delta

GO:

id name namespace
GO:0071391 cellular response to estrogen stimulus biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K04571 SSR4; translocon-associated protein subunit delta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225073.1 True 989 mRNA 0.46 6 11311561 11313590

Neighbor

gene id symbol gene type direction distance location
sephs3 sps2,LOC107560911,LOC108275954 coding downstream 659 11305279 ~ 11310902 (-)
fam120c fam120c,LOC107741318,LOC107657034,LOC107672004,LOC107562475,LOC107560908 coding downstream 51374 11245528 ~ 11260187 (-)
hsd17b10 hsd17b10,LOC107562460,LOC107741341,LOC107560905,LOC107737644 coding downstream 69973 11238450 ~ 11241588 (-)
tafa1a fam19a1a,fam19a1,LOC107657002,LOC107560881,LOC107563677,LOC107741340,LOC108436303,LOC108275576 coding downstream 98285 11175947 ~ 11213276 (-)
nucks1b LOC107563650,LOC107737648,LOC107741315,LOC107672021,LOC107560904,LOC107657038 coding downstream 157111 11148868 ~ 11154450 (-)
ikbkg LOC107737639,LOC107672044,LOC107741321,LOC107657029 coding upstream 1115 11314705 ~ 11321862 (-)
zgc:158296 LOC107737724,LOC107671977,LOC107562459,LOC107657001,LOC107741322 coding upstream 9065 11322655 ~ 11324876 (-)
arhgap4b arhgap4b,LOC107560914,LOC107737637,LOC107672018,LOC107741320,LOC107657026 coding upstream 11903 11325493 ~ 11351439 (-)
zgc:103759 zgc:103759,LOC107737722,LOC107562457,LOC107657028,LOC107741343 coding upstream 41290 11354880 ~ 11356679 (-)
trpc4apb trpc4apb,LOC107737634,LOC107560917,LOC107672047,LOC107741324,LOC107562468 coding upstream 65958 11379548 ~ 11386723 (-)
G156762 NA non-coding downstream 66741 11242600 ~ 11244820 (-)
G156759 NA non-coding downstream 148542 11162664 ~ 11163019 (-)
G156726 LOC107737655 non-coding downstream 235600 11071410 ~ 11075961 (-)
LOC122329093 NA non-coding downstream 253566 11050293 ~ 11057995 (-)
G156719 rnd1a,LOC107560900,LOC107737660,LOC107657046,LOC107563659,LOC107741331,LOC107672025 non-coding downstream 258266 11047145 ~ 11053295 (-)
G156785 NA non-coding upstream 39569 11353159 ~ 11353828 (-)
LOC122328925 NA non-coding upstream 62587 11376177 ~ 11376688 (-)
G156812 NA non-coding upstream 226033 11539623 ~ 11540045 (-)
G156962 NA non-coding upstream 448850 11762440 ~ 11763023 (-)
G156971 NA non-coding upstream 467977 11781567 ~ 11782366 (-)
G156746 NA other downstream 206338 11100744 ~ 11105223 (-)
LOC122328798 fkbp1ab,fkbp1a,LOC107707744,LOC107657066,LOC107747971,LOC108435222,LOC107559476,LOC100705189,LOC105013763,LOC101476936 other downstream 633411 10675680 ~ 10678150 (-)
ankrd52a ankrd52a,ankrd52,LOC107594018,LOC107756410,LOC107549041,LOC108432261,LOC107671831,LOC107723718 other downstream 925594 10218473 ~ 10385967 (-)
LOC122328546 rpl10 other upstream 427810 11741400 ~ 11746620 (-)
LOC122329329 NA other upstream 431672 11745262 ~ 11745395 (-)
atp2b3b atp2b3b,atp2b3,LOC107737604,LOC107712727,LOC107672007,LOC107593407 other upstream 450119 11763709 ~ 11857968 (-)
si:dkey-93l1.9 si:dkey-93l1.9,LOC107699586,LOC107593449,LOC107671978,LOC107699561,LOC107576394,LOC107737609 other upstream 486332 11799922 ~ 11801632 (-)
G156985 NA other upstream 609254 11922844 ~ 11924650 (-)

Expression


Co-expression Network