hrct1 (chia,LOC107671898,LOC107594041,LOC107756356)


Basic Information

Item Value
gene id hrct1
gene name chia,LOC107671898,LOC107594041,LOC107756356
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 17171113 ~ 17176489 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225098.1
CTTTTACTACCCTGAAATAACAGCTtcgacattatatatatattatatatcgtTACTAAATTGTAAAAAGATCTATATACTGACTGAAACAGACATGCACTCCTTTTCAAGAGGTGGCGATATGCTTTTAAGCTGGATAAAACACAAAGCTTAATCTAGAATGAGGAAGAGGATCACAGTCTTTAAGCCCATCTGGTCTAAGCAGGCGTCCTTGAATGTGGTGGGTCCGTCAAGTCTGCTTAAATCACAATTAAGTGTAAAAAGCTACATTTCTCAAACACAACACAGCAGCTACTGACTTCTTCAGGAACAATGCCGCTCATCAGAGCTTTTGCGTTCCTTTGCCTGCTAATTTCAGTCGGTGCCCAGAGGAGTTACAGACTGACATGCTATCCTGATGTTTTAACTCAGTGCACTCGCGAGGGGCCGTGCTCTCACATCATCCTCCCCTTGACCTCCATCGATGACGACCTTTACCTCCAAAGCTTGTCGGAAAATGACAGTGATACACTTAGAAAGATGAAGGAGAGAAATCCAGCTTTGAAGATTTTACTTGGCTTGGAGGTCAAATCAtcaagGTTGGAGCTGATGTCTGCTAATGAGGCCGGTGTTGAGACTTTTGTTCAAACGGTATTGACATACTTAAAGGACAAGAGTTTAGACGGTCTGGACGTGACTTGGCTGGATGGCCCTTCTTCTGATGAATCCAGCAGAAGCACAGAGCTATTCACAAATTTGATGAAGAGTCTAAAAGGTGCGTTTGAAAAAGAAACCCAGCCTGTACTTCTGTCAGTGTCTGTACTAGAGCCTGTAGAGCACAGTGCAGTCACTTATGAGCAAACACTTTCACAGTATGTGGACTTCATCTCCGTTCTGCCTGCCGATCTCGACAAGGATGAGCTGCACATTAACAAAACAGTCCAGCACTGGCAGGACCAGCAAGTTGACCTGCAAAAGCTCAATCTTGCAATGCCGGCTTTTCAACGGCGGTCACGTCGAAGGCATCGCCACAGAGATCACCTCAAGCATGATGACATGAATACAGAGACAGGAAGGAAGGATCACATCCACGTTTTGGGCTTATACATGGGCGAATGGGTGTGTCAGGCCATTAAAAGTGGACAAGAGCAGTTCATTACTTTAACAAGTCTCTCAAATGAGCAAAGTCTTGTAGAAGAGGTGCTCCGGAAAGGCTTTGGTGGCATAGGAGTTGTCTTCATAGATGTGGACGTCTTCTATAACTCCACATGTGCGAGCATCACTCAGGAAGAACGATCGATGGTTGAATCAAAGGTGATTGTGCATTCACATCATGATCACAGACGTCGTGAGCATGGTGGTCATCATCACAGGAGAAGCCATCACCACAGCCACCACGGGCATCATCACTCTCACCTCCCTAACCGCAGCCACGGTCACCATCACCATGAACATCATCATGGCCATCGTCACCACGGTCACCGTCGTCAGCATCAGCATCACAAATAATTCCTCAAAGCAGTATACCTGATTCACTTCAGCCATactaataagaaaaaatgacTTGCAGACAAATAATTgtgcttcattgttttttaattgagtAGTGAACCTTTTTTCCGGTATTCTACCGCATAGACATTAATTAATTGAGGTTTGTTGATTACActttttggtgtgaaagggcttttacatttgctataaGTAGAACgtcttatatttaaaataatcaagcCCTGCTCGTacttaaaaaattacataaagcaAATAAcgcaaaagtattaatttttaaacgCAATTTGTTACTTTATTAGGGAGTAAcgcaatattgtaatatattaacttttttaagaGTAACTTTCTCcaacactgtgtgtgtatatatatacacacatacacatacatatacatatatatatatatatata
>XM_043225099.1
tCTGCCTTTATCAGACAACACAGCAGCTACTGACTTCTTCAGGAACAATGCCGCTCATCAGAGCTTTTGCGTTCCTTTGCCTGCTAATTTCAGTCGGTGCCCAGAGGAGTTACAGACTGACATGCTATCCTGATGTTTTAACTCAGTGCACTCGCGAGGGGCCGTGCTCTCACATCATCCTCCCCTTGACCTCCATCGATGACGACCTTTACCTCCAAAGCTTGTCGGAAAATGACAGTGATACACTTAGAAAGATGAAGGAGAGAAATCCAGCTTTGAAGATTTTACTTGGCTTGGAGGTCAAATCAtcaagGTTGGAGCTGATGTCTGCTAATGAGGCCGGTGTTGAGACTTTTGTTCAAACGGTATTGACATACTTAAAGGACAAGAGTTTAGACGGTCTGGACGTGACTTGGCTGGATGGCCCTTCTTCTGATGAATCCAGCAGAAGCACAGAGCTATTCACAAATTTGATGAAGAGTCTAAAAGGTGCGTTTGAAAAAGAAACCCAGCCTGTACTTCTGTCAGTGTCTGTACTAGAGCCTGTAGAGCACAGTGCAGTCACTTATGAGCAAACACTTTCACAGTATGTGGACTTCATCTCCGTTCTGCCTGCCGATCTCGACAAGGATGAGCTGCACATTAACAAAACAGTCCAGCACTGGCAGGACCAGCAAGTTGACCTGCAAAAGCTCAATCTTGCAATGCCGGCTTTTCAACGGCGGTCACGTCGAAGGCATCGCCACAGAGATCACCTCAAGCATGATGACATGAATACAGAGACAGGAAGGAAGGATCACATCCACGTTTTGGGCTTATACATGGGCGAATGGGTGTGTCAGGCCATTAAAAGTGGACAAGAGCAGTTCATTACTTTAACAAGTCTCTCAAATGAGCAAAGTCTTGTAGAAGAGGTGCTCCGGAAAGGCTTTGGTGGCATAGGAGTTGTCTTCATAGATGTGGACGTCTTCTATAACTCCACATGTGCGAGCATCACTCAGGAAGAACGATCGATGGTTGAATCAAAGGTGATTGTGCATTCACATCATGATCACAGACGTCGTGAGCATGGTGGTCATCATCACAGGAGAAGCCATCACCACAGCCACCACGGGCATCATCACTCTCACCTCCCTAACCGCAGCCACGGTCACCATCACCATGAACATCATCATGGCCATCGTCACCACGGTCACCGTCGTCAGCATCAGCATCACAAATAATTCCTCAAAGCAGTATACCTGATTCACTTCAGCCATactaataagaaaaaatgacTTGCAGACAAATAATTgtgcttcattgttttttaattgagtAGTGAACCTTTTTTCCGGTATTCTACCGCATAGACATTAATTAATTGAGGTTTGTTGATTACActttttggtgtgaaagggcttttacatttgctataaGTAGAACgtcttatatttaaaataatcaagcCCTGCTCGTacttaaaaaattacataaagcaAATAAcgcaaaagtattaatttttaaacgCAATTTGTTACTTTATTAGGGAGTAAcgcaatattgtaatatattaacttttttaagaGTAACTTTCTCcaacactgtgtgtgtatatatatacacacatacacatacatatacatatatatatatatatata

Function

symbol description
chia Enables chitinase activity and kinase binding activity. Involved in chitin catabolic process; positive regulation of chemokine production; and production of molecular mediator involved in inflammatory response. Located in extracellular space. Implicated in asthma. Biomarker of asthma and sinusitis.

NR:

description
PREDICTED: acidic mammalian chitinase isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225098.1 True 1907 mRNA 0.42 11 17171113 17176489
XM_043225099.1 False 1642 mRNA 0.43 10 17171113 17175579

Neighbor

gene id symbol gene type direction distance location
plxna2 plxna2,LOC107594012,LOC108425528 coding downstream 163827 16832085 ~ 17007286 (-)
LOC122329053 neurog1,LOC107598364,LOC107741101,LOC107664747,LOC107710304,LOC107662038,LOC107563607 coding downstream 489425 16680306 ~ 16681688 (-)
LOC122329052 LOC107716220,LOC107695793,LOC107586565,LOC107683357,LOC107571777,LOC107708795 coding downstream 493746 16674237 ~ 16677367 (-)
LOC122328572 acvr1ba,LOC107708859,LOC107570552,LOC107681940,LOC107716207,LOC107563637,LOC107695803 coding downstream 554774 16609478 ~ 16616339 (-)
LOC122328366 LOC107708845,LOC107682000,LOC107570669,LOC107716098,LOC107695785,LOC107586560,LOC107586530 coding downstream 625425 16541514 ~ 16545688 (-)
itga5 itga5,LOC107671874,LOC107697976,LOC107594039 coding upstream 38110 17214599 ~ 17258164 (-)
csrnp2 csrnp2,LOC107671888,LOC107715040,LOC107594006,LOC107598537,LOC107756414 coding upstream 117689 17294178 ~ 17302565 (-)
tfcp2 tfcp2,LOC107671887,LOC107715039,LOC107756415,LOC106572516 coding upstream 126722 17303211 ~ 17315390 (-)
pou6f1 pou6f1,LOC107671889,LOC107715037,LOC107598516,LOC107756417,LOC107697973 coding upstream 140139 17316628 ~ 17330887 (-)
bin2a LOC107671903,LOC107715035,LOC107594002,LOC107697868,LOC107598577,LOC107756358 coding upstream 167613 17344102 ~ 17350948 (-)
G158587 NA non-coding downstream 88429 17082207 ~ 17082684 (-)
G158484 NA non-coding downstream 442770 16728101 ~ 16728343 (-)
G158483 NA non-coding downstream 443398 16727438 ~ 16727715 (-)
G158481 NA non-coding downstream 446710 16723931 ~ 16724403 (-)
G158462 NA non-coding downstream 563153 16607461 ~ 16607960 (-)
G158605 NA non-coding upstream 113482 17289971 ~ 17291543 (-)
G158608 dazap2,LOC107715036,LOC107594003,LOC107671873,LOC107756418,LOC107598568 non-coding upstream 134839 17311328 ~ 17338919 (-)
G158628 NA non-coding upstream 206853 17383342 ~ 17386554 (-)
G158632 NA non-coding upstream 217532 17394021 ~ 17395422 (-)
G158706 LOC107599375,LOC107715025,LOC107671876,LOC107594031,LOC104946192 non-coding upstream 570041 17746530 ~ 17748502 (-)
G158336 LOC107716221,LOC107570608,LOC107586536,LOC106567035 other downstream 812408 16355369 ~ 16358705 (-)
tac3a LOC107708854,LOC107571761,LOC107681951,LOC107586540,LOC107695797 other downstream 927718 16240810 ~ 16243395 (-)
G158288 LOC107708856,LOC107570569,LOC107716212,LOC107681953,LOC107695729 other downstream 1001279 16143833 ~ 16169834 (-)
G158231 NA other downstream 1162198 16008106 ~ 16008915 (-)
LOC122329227 NA other downstream 1453863 15621942 ~ 15717250 (-)
slc48a1a slc48a1a,LOC107671836,LOC107598487,LOC107594008,LOC107756371,LOC107697869,LOC107757747 other upstream 136 17176625 ~ 17184385 (-)
G158609 NA other upstream 162778 17339267 ~ 17343385 (-)
coq10a si:dkey-190g6.2,LOC107671896,LOC107715030,LOC107598614,LOC107697969,LOC102210977,LOC108425511,LOC102797363 other upstream 237214 17413703 ~ 17422517 (-)
march9 march9,LOC107593952,LOC107664138,LOC107714987,LOC107706970,LOC107599679,LOC107697857,LOC107088728,LOC108433385,LOC103130462,LOC105930772 other upstream 869437 18045926 ~ 18058739 (-)
hnrnpa1b hnrnpa1b,LOC107664187,LOC107714994,LOC107707002 other upstream 1055154 18231643 ~ 18235536 (-)

Expression


Co-expression Network