itga5 (itga5,LOC107671874,LOC107697976,LOC107594039)


Basic Information

Item Value
gene id itga5
gene name itga5,LOC107671874,LOC107697976,LOC107594039
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 17214599 ~ 17258164 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225102.1
TGGAGGGAGGACGCAGAAAGGAGAGGACAGATAGACGGAGGCGCGGTAACAGAGCGCTTGGAAAAATAAGGATCAGACCGATACGCTTCATAGAGGCATGCGCTTTGCGTAAGGCAGCATCATCAGGAGGATTCCGCTCAAGTGCCCCCTTTTGTTCTGAAAGAAGTTTAATAAAGAAGTGGATTGTGACATATCGATTACTATGGGCTCCAAAAGGCACCGTTCAAAGACTTCAGCGTCTTTACACAACCCGCGCTGCTCTCCAATGGGACTTTCACTGTTGATTCTTCTACCTTTGTCTGTTGCCTTCAACTTGGATGTGGAGAACCCAGCGGTGTATACTGGACCCAACGGTAGTTACTTCGGTTACTCGGTGGACTTTTACATGACTGACTCAAGTGTGAGTATTATAGTTGGAGCACCCAAAGCCAACACCAGCCAGCCCAACATCAGAGAAGGAGGATCAGTCTTCTACTGTCCATGGAgcctcagccaatcacaatgcagCAGCATAGAATTCGATACACAGGGAGATCTAAATATGCCCGTGAATGAAGCAGTACATCAGGGAGAGTTCAAATCCCATCAGTGGTTTGGAGCAACAGTACGAGTTCATGAAGATAGTGTGCTGGCTTGTGCCCCCCTCTACTCCTGGAGAGCCATGGAGGACAAACCTCATGCTGATACAACTGGCTCATGTTTTCTATCTGTCAAAAACTTCACTAAGTTTGTGGAATATGCGCCGTGCCGCACAGAATTTCGCGGAAGAAAAGGACAAGGCTACTGTCAAGGTGGATTCAGTGCTGATTTTACACAGGAAGGAAAGGTGGTGCTTGGAGGACCTGGCAGTTACTTCTGGCAAGGCCAAGTGATCACTGCAGTTAAACAAGAAATAGTCAAAGCCTATTACCCAGGATACTTCTTGACCTCAGTGGAAGGCCAGATTCAGaccaaacagaaaaaagagaTCACATTTGATGACACCTACATGGGTTACTCAGTGGCTGTCGGCGAGTTcagtggtgatgatgatgaagACTTTGTGACTGGAGTTCCCAGGGGAGTCAGACTGCATGGACAGGTTTCAATTCTCAATGGTTCTCTGGACATGCTGAAGACCTTCACTGGTGAGCAGATGGGTTCCTACTATGGCTATGCAGTGGCTACTACTGACATAAACAATGATGGGATGACGGACCTGCTGGTCGGCGCTCCCATGTTCATGGTTCGTGACTCTGATGGGAGGTTGGAGGAGTTGGGTCGGGTCTATGTGTACATGCAGAACGGACCTCTGGATCTCACACCTCAGCTACCTCACCTCACCGGCACGCAGACGTTCGGCCGGTTTGGCAGCTCCATTACCCCTCTCGGAGACCTCAACCAAGATGGTTACAATGATGTGGCCATAAGTTGTCCATTTGGTGGGGAAAACAAACAGGGACTGGTGCTCATCTATAATGGACATGCTGGAGGACTCAGGGAAAAGCCCTCTCAGGTGATCGCTGGTCAGTGGGCTTCTGCCACACCATCAGCTCTACCTGCCAGTTTTGGTTACTCCCTTCGTGGAGGCAAAGACCTGGATAATAATGGCTACCCAGATCTTATTGTTGGTGCATTTGGTGCAGACACTGCCGTTCTTTACAGGTCTCGTCCTATTGTGAACACCAGCGCTACCTTGACTGTCTATCCAACTATGATTAATCCAGAGGAGAAGGTTTGCACCATAAGCCGTGGAAACGAAACTCTGCAAGTGTCCTGTGTCAACTTGAGCTTCTGCCTCTCAGCCAATGGGAAGCACCTACCAAATCATCTCGAGTTTAATGTTGAAGTTCAGCTGGACCGGCTGAAACAGCAGCAGAAGGGGGCCGTACGGAGAGCTTTGTTTTTAGACACCCAGCTTCCCGCTCTGCAGAGGACTCTGACTGTGCCAAATGGAGACAGAGTCTGCAGTGACACCAAGATCTTCTTGTGGGATGAGAAGGACTTCAGGGATAAGCTGTCGCCTATATTTGTTGCTTTCAACTTCAGCCTAAACCCTCAAGCCGCGGCAGACAGATACGACCTGCGACCCATCCTCAACTACCAGACAGCAGAGCTCATCGAACAGAAAGCCCAGATTTTATTGGACTGCGGAGAGGACAACATCTGCGTCCCTGACCTGAAACTCTCTGTGCACGGGGACAGGAAGGAAGTGTACATGGGCGATGACAACTCTCTGACCCTGACTTTTAACGCGAAGAATGACGGAGGCGGAGCTTACGAAGCAGAGCTGTATGTGGTCTTGCCACCAGAGGCCGACTACAGTGGAATAGCCCGCAATAACGAGAGCCTGACCCAACTGACCTGCAGTTATGAGACGGAAAATCAGACCCGTTACCTCAGCTGTGACCTGGGCAACCCCATGAAATCAGGCACAAGCtTATGGGCTGGACTGAGATTTACAGTACCACGTCTGAAGGACACACACAAATTTGTGCAATTTGACCTGCAGATCCGTAGTAAGAATGAGAATAACTCCCAGAGTGAAGTCGTCCCCTATAAGTTGGAGGTGGTGGTCCAGTCAGATGTTATTCTGCAGGGTGTCTCCCGACCAGACAAGGTCTTCTTTCCCCCACCGAACTGGAAGTTGACCAAGAATGTTATGGTTGAACAGGATGTCGGACCCTCCGTCCAGCACACTTACGAGCTGGTGAACAACGGGCCGAGCCGCATCAGTCACACTTTACTGGAGCTCAAATGCCCCATGAGGCTTCAAAGTAACAAGTTAATTTACCCGCTGGAGGTTACGACGGAGGGCCCCGTTAACTGCACCACCCACAACATAGTCAACCCCTTGAACCTCAAGcTCCAGCAGTCTTCTACCGATCAGCCTCCTTTAAGAGACGCGGCCCACGAACACCACATTGAGAAGAGGGAAACGCACAAGGGCGAGCTGTCTCAGCTGACCAATCTGTCTTGCTCAAGTGTGGAGTGCTGGACACTAACGTGTAATGTTGGCCTGCTGGAGCGGGGGACTAGTGCCATACTGCATGTTCGCTCACGAATCTGGGCAGAAACGTTCATGGAGAATCCATATAAAAACTTCATTCTGGAGTGCCTTGCTAGTTACAAAGTGGAAAAGATGCCATATGCCATTCTGCCCAAAGTGACTCCTAGTGGTGCTAAGAAGATGGTCACTCCTGTGGTCTGGAATAAGCCAGACAGTACGTACGCTGTTCCTCTGTGGATCATCATCCTGGCTATTTTGGCTGGTCTTCTACTGCTCGCACTGCTGATCTACGTCCTCTACAAGCTTGGCTTCTTCAAGAGAACTCCATACGGCACGGCCATGGAAAAAGCCCAGCTCAAACCTCAGGCTGCATCCGAGGCCTAAACTACACAAGAGAGCATTTAGAAAACACGTCCCGGAGAATGTTCTTGACCAGAGGCCATCCAAAGAGAGCTTacttgctgttaaaaaaaaaaaaatgacaaagactAGACTGCAGTAAAGGAATACGGAGGAAAGATCACTGGATCTTCACTGTACTGCACTAGATCATGAGACCCTGAGGACTTAAAGCCAAATGAATGTTgacatttactattttatattattgtttttccttGATGTGGGTTTTTAGCCACCACTTATAGCCTACCACTCACAAACAGATCTTAACCAAAACTCAGGATCACTTGCCTCGCCTGGCAACCTGCTAAAGgagaaaatgagacaaaatcTATGGACACAATCTGCACTAATAATGAgagtaacatttattatatttagttttttggtcTTAGTCTGCAACTGTTCAAAGATTTCAGATGGTTAATCAGCATCTGCCGTGTAGCATTTCAATTTTtatgttaaacacacacacacgtttgcaccaaaaaaaaacttctatgCAGTATTTCACAACCAACCAGAGATATTAAGACAGGTTTTGctcatttattgttttgaaagagAGAACGAGGTAGTTTGATACCTCACCATGGACCCTCATCTCCAGTTTCctgctgtctttttttcttttttttttccattttgtgatTTTCATTAGAATGGGTTTTCACTTCGAAATGAGATGTTTTCAGCTCAGTCTCCTCTGTATCTTCTGAAGAAAGCAAGCCAGGTTGGTTTCGCTCTCAGGTGATGCCGCGGAAAGCGTAGAGTGACTCATTTCCGCGGAAAACATTGTCAGGATCCTTCGTGGAAGGCGGCCGTTCTTCCCTGCTGAATGTCGGCCGTTTCGGTCTTGTTATCGTAGCAGTAACAAGCGACAACGTTGCCTTAAAAAGTCATCTGGGACTCAACTGGATCCGCACCGAGCCTGTGAAACCTCACCGATGCCTTGAAGCAGAGCTGTGCTTTGCCTTACGCTAACAGACTCTTGGGCCAAATAGCGGAAGGGTTGTCCCTCCAAACTTCTGAGGGGGAACGGAGAATATCTGTGCACTTGGAAGGAGATTTGAAAGCAAACCTCTTCCAAGGCAGCAGGCCTCATCCAGGGACTGAATGTCGAAAAACATCTGTATactttttgttgtctttttttttttttttttttttttgtatgtgtgtttttgtgatcaCCTGCTTGTGTGCATTTGgatgtgagattttttttggggggagggGTTTATGGAGAGCCACAGTCAGTGTAGAAATGCCTCCGTACATCATGGTGCTGAAGTGGCTGAAAAGGACAGGAAGTAACTACAATCACCCATCTTGAAACTCCTGTTTCAGTAAGCCACCTAGAAAGGGAAAGCAGCTGGAACTGTGGGATTTGTAGGAAATCTGTATGGAAGtgcaatattattgtatttttttttttcaagttgttttgtcatgtgcattttattttagtgaagtTCTCAGAAATAAGGAGTATTTGAAGACAACACCCAGTTTGAGGGTTGAAATTAGCCCAGATGTTCAGATAATTTAAAAGACAGCGTAATGCTGTAGtctaaaaaatacagaaactgACAAAAAGGACCAGATTTTTAATGACAGACTCCACTTGAATcctttgtaatgttttgaatCTCTTTTGTACattatcaaaaattatttattcctccaaaatttagattttagtttcgagatttttgtattttgagcgGGAGGAAACACTGGGtatgtcttcatttattttattttattttttaactgcCCCGAATCCCcggttgtgttttttttgttttaagttgtAAATATGTTTGGTGAggagattattttaattttcagctgATACTGATTTCATCGCCCCATATTGGGGAGAATCAGAGGGATGTTCaagtaattatttgtatttagtttgcattttaaaataaatctttcagttttttttacaa

Function

symbol description
itga5 Enables fibronectin binding activity and protein heterodimerization activity. Acts upstream of or within several processes, including camera-type eye development; cell migration involved in sprouting angiogenesis; and chordate embryonic development. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of integrin complex. Is expressed in several structures, including cardiovascular system; ectoderm; head; mesoderm; and somite. Orthologous to human ITGA5 (integrin subunit alpha 5).

NR:

description
integrin alpha-5-like

GO:

id name namespace
GO:0001756 somitogenesis biological_process
GO:0007229 integrin-mediated signaling pathway biological_process
GO:0001501 skeletal system development biological_process
GO:0085029 extracellular matrix assembly biological_process
GO:0007155 cell adhesion biological_process
GO:0008305 integrin complex cellular_component
GO:0046982 protein heterodimerization activity molecular_function
GO:0001968 fibronectin binding molecular_function

KEGG:

id description
K06484 ITGA5, CD49e; integrin alpha 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225102.1 True 5352 mRNA 0.46 30 17214599 17258164

Neighbor

gene id symbol gene type direction distance location
hrct1 chia,LOC107671898,LOC107594041,LOC107756356 coding downstream 38110 17171113 ~ 17176489 (-)
plxna2 plxna2,LOC107594012,LOC108425528 coding downstream 207313 16832085 ~ 17007286 (-)
LOC122329053 neurog1,LOC107598364,LOC107741101,LOC107664747,LOC107710304,LOC107662038,LOC107563607 coding downstream 532911 16680306 ~ 16681688 (-)
LOC122329052 LOC107716220,LOC107695793,LOC107586565,LOC107683357,LOC107571777,LOC107708795 coding downstream 537232 16674237 ~ 16677367 (-)
LOC122328572 acvr1ba,LOC107708859,LOC107570552,LOC107681940,LOC107716207,LOC107563637,LOC107695803 coding downstream 598260 16609478 ~ 16616339 (-)
csrnp2 csrnp2,LOC107671888,LOC107715040,LOC107594006,LOC107598537,LOC107756414 coding upstream 36014 17294178 ~ 17302565 (-)
tfcp2 tfcp2,LOC107671887,LOC107715039,LOC107756415,LOC106572516 coding upstream 45047 17303211 ~ 17315390 (-)
pou6f1 pou6f1,LOC107671889,LOC107715037,LOC107598516,LOC107756417,LOC107697973 coding upstream 58464 17316628 ~ 17330887 (-)
bin2a LOC107671903,LOC107715035,LOC107594002,LOC107697868,LOC107598577,LOC107756358 coding upstream 85938 17344102 ~ 17350948 (-)
racgap1 racgap1,LOC107671897,LOC107594001,LOC107697971,LOC107756422,LOC107714933,LOC107599350 coding upstream 95983 17354147 ~ 17361384 (-)
G158587 NA non-coding downstream 131915 17082207 ~ 17082684 (-)
G158484 NA non-coding downstream 486256 16728101 ~ 16728343 (-)
G158483 NA non-coding downstream 486884 16727438 ~ 16727715 (-)
G158481 NA non-coding downstream 490196 16723931 ~ 16724403 (-)
G158462 NA non-coding downstream 606639 16607461 ~ 16607960 (-)
G158605 NA non-coding upstream 31807 17289971 ~ 17291543 (-)
G158608 dazap2,LOC107715036,LOC107594003,LOC107671873,LOC107756418,LOC107598568 non-coding upstream 53164 17311328 ~ 17338919 (-)
G158628 NA non-coding upstream 125178 17383342 ~ 17386554 (-)
G158632 NA non-coding upstream 135857 17394021 ~ 17395422 (-)
G158706 LOC107599375,LOC107715025,LOC107671876,LOC107594031,LOC104946192 non-coding upstream 488366 17746530 ~ 17748502 (-)
slc48a1a slc48a1a,LOC107671836,LOC107598487,LOC107594008,LOC107756371,LOC107697869,LOC107757747 other downstream 30214 17176625 ~ 17184385 (-)
G158336 LOC107716221,LOC107570608,LOC107586536,LOC106567035 other downstream 855894 16355369 ~ 16358705 (-)
tac3a LOC107708854,LOC107571761,LOC107681951,LOC107586540,LOC107695797 other downstream 971204 16240810 ~ 16243395 (-)
G158288 LOC107708856,LOC107570569,LOC107716212,LOC107681953,LOC107695729 other downstream 1044765 16143833 ~ 16169834 (-)
G158231 NA other downstream 1205684 16008106 ~ 16008915 (-)
G158609 NA other upstream 81103 17339267 ~ 17343385 (-)
coq10a si:dkey-190g6.2,LOC107671896,LOC107715030,LOC107598614,LOC107697969,LOC102210977,LOC108425511,LOC102797363 other upstream 155539 17413703 ~ 17422517 (-)
march9 march9,LOC107593952,LOC107664138,LOC107714987,LOC107706970,LOC107599679,LOC107697857,LOC107088728,LOC108433385,LOC103130462,LOC105930772 other upstream 787762 18045926 ~ 18058739 (-)
hnrnpa1b hnrnpa1b,LOC107664187,LOC107714994,LOC107707002 other upstream 973479 18231643 ~ 18235536 (-)
hoxc1a LOC107598919,LOC107707004,LOC107697929,LOC107594049,LOC107664160,LOC107714959 other upstream 1037882 18296046 ~ 18302575 (-)

Expression


Co-expression Network