LOC122328977 (LOC107671833,LOC107715029,LOC107598604,LOC107707038,LOC107697965,LOC107593998)


Basic Information

Item Value
gene id LOC122328977
gene name LOC107671833,LOC107715029,LOC107598604,LOC107707038,LOC107697965,LOC107593998
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 17428457 ~ 17432713 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225106.1
ATTTGCCCGTGACGTCACGCGGCTAGTGTATACGCGAGCGCTGAGGCTATGTGGAGAGTAGTGATGTCGGAGGAGGTTGGGAAGAAAGTGCAGGCGGTGGTGGACCGGGTGAATCAAGCGGTTTCCCGGCGCCCGAAGACGTTACCATGTATAGCCCCTCGTCTGGTTGCGGTTAGTAAGACTAAACCGCCGGAGATGGTGGTGGAGGCTTACAAACACGGACAACGGAACTTTGGAGAGAATTATGTAAATGAACTTGTTGAGAAAGCTTCTCATCCCTTGGTTGTCTCGTCATGTCCTGAAATAAAGTGGCATTTCATTGGTCATCTGCAAAAGAATAATGTCAACAAACTCCTCAGTGTCCCAAACTTGTATATGGTAGAGACGATCGATTCTATAAAACTGGCTGAAAAAGTCAACAGCTCATGGCAAAAAATGAGAGCTGCCAACACACAGCACTTAAAGATTATGGTTCAGATCAACACCAGCGGAGAGCACAGTAAACATGGCCTGCCTCCTGATGAGACtgtaaacatggtaaaacacatcGTGTCTCAGTGCCCTGCTCTTGACTTTGCGGGGCTCATGACGATCGGCCGTTACGGTTACGACCTCAGTGAAGGCCCTAACCCCGATTTCCAGatgCTGTTGAAACGTCGCGAGGAAGTCTGTGAAAGCCTGAAGATCCCAGTAGAGCAGGTTGAGCTCAGTATGGGCATGTCTACCGACTTTGAACATGCGATCGAGGTTGGCTCTACAAACGTACGCGTCGGCAGCACTATTTTCGGCACCCGAGAATACCCCAACACCCCAAGCCCCAGTCCGGAGAGAAAGCCAAAGGTCGTCTGTGAGGAAGCAGCCAGGAAAATGGACCGGCTCACGGTCACCGAGCAATGAatcatgggggaaaaaaaggttaCCGAACTAATTGTGGGACCTCTTGGGCTTCTTCCCAATGACTGGGCTCACCATTCACCAGTCAAGGGCCTTTAATATGTCTTAACTAATGCTGCTGTCCTGCTCTTCTGTGGCGAAAGAACTAGCAAGAAGCGTGATATAGTAACTGGAATACTAAACTTACTTCCTGAAGCTGTTTTTATTGTCGAAAGCTCTCCAGAAGTGTCCTCCAGCCCTCTTGTAAATTCCTTAAGCTTGGTTTTCCGACTATTTTTATCAGACACAGGGTCAGCACATGCTCGGTTTCGTTGTGCCAATCGTAGATGTAAGGtataatttgtcttttttgttcaGTTAGATGTTAGTGACccattttaacatctaattAAAACAATAGGATGTATCATTTTGGTTTATAGAAGTGTGTAGGTATATTTTATAGCGTGTCCttgtattgttttgttcaaaaccataaatgtaaatgatataaatagCACATTTATATAGTCTTGCTTCAGTA

Function

NR:

description
PREDICTED: proline synthase co-transcribed bacterial homolog protein-like

GO: NA

KEGG:

id description
K06997 yggS, PROSC; PLP dependent protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225106.1 True 1417 mRNA 0.46 8 17428457 17432713

Neighbor

gene id symbol gene type direction distance location
cs cs,LOC107707042,LOC107715034,LOC107671863,LOC107697968 coding upstream 11802 17405458 ~ 17416655 (+)
LOC122329248 LOC107671862,LOC107756420,LOC107697970,LOC101886435,LOC107594036,LOC108425513 coding upstream 25609 17362363 ~ 17402848 (+)
si:ch211-210c8.6 si:ch211-210c8.6,LOC107756419,LOC107598584,LOC105906836,LOC106567173 coding upstream 74047 17349249 ~ 17354410 (+)
dazap2 dazap2,LOC107715036,LOC107671873,LOC107756418,LOC107697974,LOC107594003,LOC107598568 coding upstream 89521 17333245 ~ 17338936 (+)
rapgef3 rapgef3,LOC107723737,LOC107671875,LOC107598495,LOC107697977,LOC107756413 coding upstream 213965 17180872 ~ 17214492 (+)
fam50a fam50a,LOC107707036,LOC107598596,LOC107671832,LOC107697964,LOC107715033 coding downstream 5804 17438517 ~ 17444127 (+)
si:ch211-207e14.4 LOC107707035,LOC107697962,LOC107598648,LOC107671899,LOC107594033 coding downstream 11809 17444522 ~ 17452097 (+)
sars1 sars,LOC107697960,LOC107671868 coding downstream 21742 17454455 ~ 17460470 (+)
chchd6a chchd6a,LOC107715026,LOC107671869,LOC107593996,LOC107697961,LOC107707034,LOC107598676 coding downstream 28549 17461262 ~ 17518098 (+)
LOC122329281 LOC107594031,LOC107715025,LOC107671876,LOC107599375,LOC108425505,LOC106572368 coding downstream 132465 17565178 ~ 17715464 (+)
G158573 NA non-coding upstream 6157 17420722 ~ 17422300 (+)
G158579 NA non-coding upstream 7814 17420026 ~ 17420643 (+)
G158569 NA non-coding upstream 23417 17358364 ~ 17405040 (+)
G158550 NA non-coding upstream 117665 17308713 ~ 17310792 (+)
G158543 csrnp2,LOC107671888,LOC107598537,LOC107715040,LOC107594006,LOC107756414 non-coding upstream 131999 17294071 ~ 17296458 (+)
G158726 NA non-coding downstream 377872 17810585 ~ 17810812 (+)
G158754 LOC107714950,LOC107664163,LOC107706981,LOC107563148,LOC107697872,LOC107599688 non-coding downstream 489857 17922570 ~ 17923679 (+)
G158775 NA non-coding downstream 512220 17944933 ~ 17945141 (+)
G158810 LOC107714990,LOC107593956,LOC107664165 non-coding downstream 732883 18165596 ~ 18173699 (+)
G158817 NA non-coding downstream 769463 18202176 ~ 18202492 (+)
snrpg snrpg,LOC107671841,LOC107594056,LOC107598637,LOC107706979 other upstream 426 17426733 ~ 17428031 (+)
si:ch211-148l7.4 LOC107715028,LOC107671835,LOC107593999,LOC107697967,LOC107706980 other upstream 1824 17423120 ~ 17426633 (+)
G158523 NA other upstream 256618 17105498 ~ 17171839 (+)
G158524 NA other upstream 345802 17082205 ~ 17082655 (+)
G158486 NA other upstream 695573 16731346 ~ 16732884 (+)
camk2n1b camk2n1b,LOC107664141,LOC107714949,LOC107706982,LOC107563146,LOC107599136 other downstream 378356 17811069 ~ 17856534 (+)
G158789 march9,LOC107664138,LOC107593952,LOC107697857,LOC107714987,LOC107706970,LOC107599679,LOC105912704 other downstream 624401 18057114 ~ 18058917 (+)
fam110c LOC107714930,LOC107664105,LOC107593987 other downstream 1208781 18641494 ~ 18644692 (+)
G159081 NA other downstream 1339237 18771950 ~ 18789618 (+)
LOC122328754 LOC107715022,LOC107593991,LOC107697954,LOC107664193,LOC564564,LOC107598698,LOC107707027,LOC108432721 other downstream 1366859 18799572 ~ 18814653 (+)

Expression


Co-expression Network