rps26 (rps26,RPS26,rps26l,LOC107563646)


Basic Information

Item Value
gene id rps26
gene name rps26,RPS26,rps26l,LOC107563646
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 16007616 ~ 16008734 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225132.1
CTTCCGGCTGCTGTACGCACTATATAAGTGACGTAAGCGCTTTTCCGGTCCTCTCTCATGCCTCTCTGAATCAAGATGACCAAGAAGAGGAGGAACAACGGTCGTGCCAAGAAGGGACGTGGACATGTCCAGCCCATCCGCTGCACAAACTGTGCCCGGTGTGTCCCTAAGGACAAAGCCATCAAGAAGTTTGTCATCAGAAATATTGTGGAGGCTGCAGCTGTAAGGGACATCTCCGAAGCCAGTGTGTTTGACTCCTACGTTTTGCCCAAACTGTATGTGAAACTGCACTACTGCGTCAGCTGTGCCATCCACAGTAAAGTGGTGAGAAACCGCTCTCGTGAGGCCAGGAAGGACCGGACCCCTCCGCCGCGCTTCAGGCCCACTggTGGTGCCCCAAGAGCCCCTCCAAAACCAATGTAATCTGGAGATATTTTCGTACATTATGTAAGGAAATAAAGCAGACTAAAATAA

Function

symbol description
rps26 Predicted to enable mRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 10. Orthologous to human RPS26 (ribosomal protein S26).
rps26l Predicted to enable mRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit.

NR:

description
40S ribosomal protein S26-like

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02976 RP-S26e, RPS26; small subunit ribosomal protein S26e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225132.1 True 474 mRNA 0.51 4 16007616 16008734

Neighbor

gene id symbol gene type direction distance location
wnt1 wnt1,LOC107563635,LOC107716204,LOC107695811,LOC107681946,LOC107745472,LOC107570486 coding upstream 6845 15994736 ~ 16000771 (+)
LOC122328928 LOC107716074,LOC107563642,LOC107695755,LOC107571700,LOC107687557,LOC107745480 coding upstream 139515 15862039 ~ 15868101 (+)
mipa mipa,LOC107745456,LOC107570312,LOC107668565,LOC107695819,LOC107716194,LOC107571785 coding upstream 271396 15733686 ~ 15736220 (+)
ptges3a ptges3a,ptges3,LOC107745455,LOC107570321,LOC107716195,LOC107695820,LOC107571786 coding upstream 278410 15724783 ~ 15729206 (+)
rnd1b rnd1b,rnd1,LOC107745453,LOC107716191,LOC107668562,LOC103037018,LOC108275505,LOC103358261 coding upstream 305373 15691510 ~ 15702243 (+)
lmbr1l lmbr1l,LOC107708860,LOC107681941,LOC107716206,LOC107695807 coding downstream 15489 16024223 ~ 16038514 (+)
dhh dhh,LOC107708800,LOC107571723,LOC107716210,LOC107681955,LOC107563640,LOC107695806 coding downstream 34526 16043260 ~ 16048908 (+)
kmt2d kmt2d,LOC107681934,LOC107695802,LOC107716211 coding downstream 41831 16050565 ~ 16083002 (+)
arhgef25a arhgef25a,LOC107570569,LOC107708856,LOC107681953,LOC107716212,LOC107695729 coding downstream 121367 16130101 ~ 16188525 (+)
slc26a10 slc26a10,LOC107708797,LOC107681935,LOC107716215,LOC107586569,LOC107695728,LOC107570587 coding downstream 205222 16213956 ~ 16222046 (+)
G158117 NA non-coding upstream 41852 15964752 ~ 15965764 (+)
G158115 NA non-coding upstream 58195 15896647 ~ 15949421 (+)
G158113 NA non-coding upstream 69745 15934939 ~ 15937871 (+)
G158110 NA non-coding upstream 125724 15880663 ~ 15881892 (+)
G158074 scn8aa,LOC107695818,LOC107563626 non-coding upstream 179683 15818461 ~ 15827933 (+)
G158423 NA non-coding downstream 530802 16539536 ~ 16539832 (+)
LOC122328367 NA non-coding downstream 537107 16545841 ~ 16573057 (+)
G158430 LOC107660256 non-coding downstream 540505 16549239 ~ 16549606 (+)
G158434 NA non-coding downstream 546683 16555417 ~ 16555642 (+)
G158437 NA non-coding downstream 600091 16608825 ~ 16611041 (+)
G157620 NA other upstream 703066 15300704 ~ 15304550 (+)
G157656 megf11,LOC107583869,LOC107672222,LOC107596974,LOC107686294 other upstream 1011471 14992350 ~ 14996145 (+)
LOC122328907 mef2d,LOC107741762,LOC107549240,LOC107717782,LOC107597970,LOC107663114,LOC107689865 other upstream 1249399 14725910 ~ 14758217 (+)
LOC122328914 szrd1,LOC107673108,LOC107716129,LOC107737539,LOC107687433,LOC105899027 other upstream 1293061 14712147 ~ 14714555 (+)
LOC122328906 LOC107673074,LOC107737500,LOC107695835,LOC107716175,LOC107574686,LOC107564653,LOC107576192 other upstream 1320998 14680860 ~ 14686618 (+)
G158162 dnajc22,LOC107708801,LOC107716089,LOC107563648,LOC107571715,LOC107695753 other downstream 13465 16022199 ~ 16023394 (+)
LOC122328571 kmt2d,LOC107681934,LOC107716211,LOC107695802,LOC107563643 other downstream 573236 16581970 ~ 16607408 (+)
G158446 atf7a,LOC107563644,LOC107570410,LOC107745462,LOC107681998 other downstream 612464 16621198 ~ 16664314 (+)
LOC122328551 atf7b,atf7a,LOC107711055,LOC107585125,LOC107740570,LOC107667392,LOC107673513,LOC107582698,LOC107681998,LOC107716199,LOC107745462,LOC107570410,LOC107563644,LOC107695816 other downstream 626712 16635446 ~ 16669648 (+)
G158486 NA other downstream 722612 16731346 ~ 16732884 (+)

Expression


Co-expression Network