tfcp2 (tfcp2,LOC107671887,LOC107715039,LOC107756415,LOC106572516)


Basic Information

Item Value
gene id tfcp2
gene name tfcp2,LOC107671887,LOC107715039,LOC107756415,LOC106572516
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 17303211 ~ 17315390 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225139.1
TTAGTGAGGAAGGCTACTGCGGATATTACGGCAATTTCTCTACAGAGTAGAAGAGATAAACAAACATGTAATATTATacggaagacatttttaaaatcaaaatccaTCCTGTCTTCATCCTGTGAAATTTATTCGAATTTTTCGCAGCGTCGTCACTTTTTACAGCGACCGGGGAAAGAAATTAATCTTCTTTCGAGCAAAACGAAGTTGTCTTCCCAACAGAAGGACGATGGGTGGAAAAATGGCGTGAAACGATGAGCTTTACCGCATTCTTTATCTGACTCCTGTCAGAGttgtctGTGATCATCCCTAAACCCAAAGGGAGACTGTCAGGACTGTGATTCATTTGCTCATAAGTTCACTTGAATTAGACGTCTAAAGTCATGGCTTGGGCTCTGAAACTACCTCTGGCCGATGAGGTGATAGAGTCTGGTCTGGTCCAGGACTTTGATGCCAGTCTGTCAGGGATCGGGCAAGAGCTTGGAGCTGGTGCTTACAGCATGAGtgatGTGCTAGCTCTCCCCATCTTTAAACAGGAGGAGTCGAATTTACCTCCGGAAAGTGATAATAAGATTCTTCCCTTCCAGTATGTACTGTGTGCCGCGACCTCTCCTGCTGTCAAACTACACGATGAGACGCTCACCTACCTCAATCAAGGACAGTCTTACGAGATTCGAATGCTGGACAATCGTAAAATGGGGGAACTTCCTGAGATCAATGGGAAAATGGTGAAGAGCATCATCCGCGTCGTGTTTCACGATCGCCGCCTTCAGTACACTGAACACCAGCAGCTGGAGGGCTGGCGCTGGAACAGGCCGGGAGACAGAATCCTTGACTTGGATATCCCGATGTCGGTAGGGGTGGTCGATCCCAGGGCAAACCCTACACAGCTCAACACTGTGGAGTTCCTCTGGGACCCCTCGAAAAGGACCTCTGTGTTTATTCAGGTCCATTGCATAAGCACAGAGTTCACCATGCGTAAACATGGAGGAGAGAAGGGAGTCCCGTTTCGTATTCAAATCGACACTTTCAAGGAGAACGAGGCCGGGGAGTATACGGAGCATCAGCACTCCGCCAGCTGCCAAATCAAAGTTTTTAAGcctAAAGGTGCAGACAGAAAGCAGAAGACGGACAGAGAAAAAATGGAGAAACGGGCACCgcaggaaaaggaaaaatacCAGCCTTCATATGAAACCACCATTCTCACTGAGTGCTCTCCGTGGCCTGAGGTAACATACGTCAACAATTCTCCATCACCAGGTTTCAACAGCTCCCACAACAGCTTTCCCGTGAACGAAGGAAATGGTTCACCCAATCACCAGCCGGAGCCTGTGGCACAGTTAGCAgatTTGTCGTCCCACCTACTTAGAAGAGACAGTGAAAGCAATCAGAATCTGTTGCCAACGGCAACGCCACAGGAAGCACAGCAGTGGCTCCATAGAAACCGTTTTTCACCATTCTGCCGTCTCTTCTCAAACTTCTCGGGGGCCGATCTGCTCAAACTGACCCGAGAGGATGTCATCCAGATCTGTGGGCCTGCTGATGGTATTCGGCTTTTTAATGCACTCAAAGGACGGGTGGTTCGTCCAAGGCTCACTATCTATGTGTGCCAGGAGTCTCAACAGGCTCGTGAACAGCACCAGAAACATGAGAACGGAGACGGGTCCAGCAACACTTTCTTCGTGTATCATGCTATCTATCTGGAGGAGTTAACAGCTGTGGAACTGACAGAAAAGTTGGCTCAGCTCTTCAGCATCTCTCCACGCCAGATCAGTCAGATCTTCAAGCAGGGACCCACTGGTATCCATGTGTTAGTCAGTGATGAGATGATTCAGAACTTTCAAGATGAGATGTGTTTTGTCCTGGACACAATGAAAGCTGAAACAAACGATGGCTATCACATCATTTTGAAGTGAAACAAAGGATGAGGGGGAGTGAACAGGCCCCTTATGTTTTTCTTAAGATTCAACCCACAGCCCCTTCACTGCACACTTCCTGGACCTTACCGAAGATCGCTTGGTTTGGAATAATAATGGAGACGGTCATGGGAAAGGAAAAAAGGCACCAGACCCATTTTGAAACCTTTGCTGTTTTATCCATGGAGCACATGCTGCCTTTATCCACCACTTTCCATTTACACTCgcaaaacaaatcacaaaattTCTATTTTACTAACTATCTTTACCTCAAGTTGCTttgccaggaaaaaaaaattataatgtgcTATGTACGACCTTACTGGCTCAAACTGAGAGAATTGGCTCgcattaaaaacagtattatttgttgttgtctGCCTGGATGTCACCCCCTAAGTATTTTAGCTGCATATGCTAGAGTCCCATGTGAAGTTCTGTCCACATGCCTCAATGAATACTTGCTTCATAAACAACATAAGTAGAAGGCGGCGTCACATGGTAGGACCAGAGATTTCCGGGACGCTTATGAAATTGTTCATGATGAACGTTATCATCAGTTAACTTCAGTAGGCAGTCTCCTTTTTATATTGTCCCCCTCGAAAGAATTCAGTTTGCTCTATACTGCCACTATTATCAAGTTCAGTTTGTCCTTTTGACAGGTTTACGGCGAGCAGCGTGTCTAACGCATTGCTGcttcaaatcatttatattttgtataagtTAATTGTTGATTTCTTAAGCCTTGCGGGCATGACTATGACTGTTGGGCATGATATTAGGTTCTGTAGCTTTGAATCCTGATGATTTTTCATGTGTTGCTGCAAATGCACGTTATTTACAGGCGGGAGATGAACGGCAGCAGTGGGCATTATATATGtgcatcttttcattttatttttttaacattgtgcTTAAAAAACCTCCCCCCCTTTCGTTTTCATCGTTGCATATACTAGAATAGTTTTTACAAATGTCAGACTTGCCAGAGCACTATTTTATGGTATAAAAGTTCATGTTTTACAttctttttgtttccttttggATATGACCACTTTCAGGTCGGGTAACGGGGAGAAACCTTGCACTGCGTGAGAAATGGTAGTCGTGGTTAGTGCTAGACGCAAACTAGACCAAGATGGTAAAGACGTGAGGTATTGTCTGTTGTGACCCTCTACCGTGTCATTGCaatgattaaaatgacttaCCTTGAAATAA
>XM_043225140.1
TTAGTGAGGAAGGCTACTGCGGATATTACGGCAATTTCTCTACAGAGTAGAAGAGATAAACAAACATGTAATATTATacggaagacatttttaaaatcaaaatccaTCCTGTCTTCATCCTGTGAAATTTATTCGAATTTTTCGCAGCGTCGTCACTTTTTACAGCGACCGGGGAAAGAAATTAATCTTCTTTCGAGCAAAACGAAGTTGTCTTCCCAACAGAAGGACGATGGGTGGAAAAATGGCGTGAAACGATGAGCTTTACCGCATTCTTTATCTGACTCCTGTCAGAGttgtctGTGATCATCCCTAAACCCAAAGGGAGACTGTCAGGACTGTGATTCATTTGCTCATAAGTTCACTTGAATTAGACGTCTAAAGTCATGGCTTGGGCTCTGAAACTACCTCTGGCCGATGAGGTGATAGAGTCTGGTCTGGTCCAGGACTTTGATGCCAGTCTGTCAGGGATCGGGCAAGAGCTTGGAGCTGGTGCTTACAGCATGAGtgatGTGCTAGCTCTCCCCATCTTTAAACAGGAGGAGTCGAATTTACCTCCGGAAAGTGATAATAAGATTCTTCCCTTCCAGTATGTACTGTGTGCCGCGACCTCTCCTGCTGTCAAACTACACGATGAGACGCTCACCTACCTCAATCAAGGACAGTCTTACGAGATTCGAATGCTGGACAATCGTAAAATGGGGGAACTTCCTGAGATCAATGGGAAAATGGTGAAGAGCATCATCCGCGTCGTGTTTCACGATCGCCGCCTTCAGTACACTGAACACCAGCAGCTGGAGGGCTGGCGCTGGAACAGGCCGGGAGACAGAATCCTTGACTTGGATATCCCGATGTCGGTAGGGGTGGTCGATCCCAGGGCAAACCCTACACAGCTCAACACTGTGGAGTTCCTCTGGGACCCCTCGAAAAGGACCTCTGTGTTTATTCAGGTCCATTGCATAAGCACAGAGTTCACCATGCGTAAACATGGAGGAGAGAAGGGAGTCCCGTTTCGTATTCAAATCGACACTTTCAAGGAGAACGAGGCCGGGGAGTATACGGAGCATCAGCACTCCGCCAGCTGCCAAATCAAAGTTTTTAAGcctAAAGGTGCAGACAGAAAGCAGAAGACGGACAGAGAAAAAATGGAGAAACGGGCACCgcaggaaaaggaaaaatacCAGCCTTCATATGAAACCACCATTCTCACTGAGTGCTCTCCGTGGCCTGAGGTAACATACGTCAACAATTCTCCATCACCAGGTTTCAACAGCTCCCACAACAGCTTTCCCGTGAACGAAGGAAATGGTTCACCCAATCACCAGCCGGAGCCTGTGGCACAGTTAGCAgatAATCTGTTGCCAACGGCAACGCCACAGGAAGCACAGCAGTGGCTCCATAGAAACCGTTTTTCACCATTCTGCCGTCTCTTCTCAAACTTCTCGGGGGCCGATCTGCTCAAACTGACCCGAGAGGATGTCATCCAGATCTGTGGGCCTGCTGATGGTATTCGGCTTTTTAATGCACTCAAAGGACGGGTGGTTCGTCCAAGGCTCACTATCTATGTGTGCCAGGAGTCTCAACAGGCTCGTGAACAGCACCAGAAACATGAGAACGGAGACGGGTCCAGCAACACTTTCTTCGTGTATCATGCTATCTATCTGGAGGAGTTAACAGCTGTGGAACTGACAGAAAAGTTGGCTCAGCTCTTCAGCATCTCTCCACGCCAGATCAGTCAGATCTTCAAGCAGGGACCCACTGGTATCCATGTGTTAGTCAGTGATGAGATGATTCAGAACTTTCAAGATGAGATGTGTTTTGTCCTGGACACAATGAAAGCTGAAACAAACGATGGCTATCACATCATTTTGAAGTGAAACAAAGGATGAGGGGGAGTGAACAGGCCCCTTATGTTTTTCTTAAGATTCAACCCACAGCCCCTTCACTGCACACTTCCTGGACCTTACCGAAGATCGCTTGGTTTGGAATAATAATGGAGACGGTCATGGGAAAGGAAAAAAGGCACCAGACCCATTTTGAAACCTTTGCTGTTTTATCCATGGAGCACATGCTGCCTTTATCCACCACTTTCCATTTACACTCgcaaaacaaatcacaaaattTCTATTTTACTAACTATCTTTACCTCAAGTTGCTttgccaggaaaaaaaaattataatgtgcTATGTACGACCTTACTGGCTCAAACTGAGAGAATTGGCTCgcattaaaaacagtattatttgttgttgtctGCCTGGATGTCACCCCCTAAGTATTTTAGCTGCATATGCTAGAGTCCCATGTGAAGTTCTGTCCACATGCCTCAATGAATACTTGCTTCATAAACAACATAAGTAGAAGGCGGCGTCACATGGTAGGACCAGAGATTTCCGGGACGCTTATGAAATTGTTCATGATGAACGTTATCATCAGTTAACTTCAGTAGGCAGTCTCCTTTTTATATTGTCCCCCTCGAAAGAATTCAGTTTGCTCTATACTGCCACTATTATCAAGTTCAGTTTGTCCTTTTGACAGGTTTACGGCGAGCAGCGTGTCTAACGCATTGCTGcttcaaatcatttatattttgtataagtTAATTGTTGATTTCTTAAGCCTTGCGGGCATGACTATGACTGTTGGGCATGATATTAGGTTCTGTAGCTTTGAATCCTGATGATTTTTCATGTGTTGCTGCAAATGCACGTTATTTACAGGCGGGAGATGAACGGCAGCAGTGGGCATTATATATGtgcatcttttcattttatttttttaacattgtgcTTAAAAAACCTCCCCCCCTTTCGTTTTCATCGTTGCATATACTAGAATAGTTTTTACAAATGTCAGACTTGCCAGAGCACTATTTTATGGTATAAAAGTTCATGTTTTACAttctttttgtttccttttggATATGACCACTTTCAGGTCGGGTAACGGGGAGAAACCTTGCACTGCGTGAGAAATGGTAGTCGTGGTTAGTGCTAGACGCAAACTAGACCAAGATGGTAAAGACGTGAGGTATTGTCTGTTGTGACCCTCTACCGTGTCATTGCaatgattaaaatgacttaCCTTGAAATAA

Function

symbol description
tfcp2 Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human TFCP2 (transcription factor CP2).

NR:

description
PREDICTED: alpha-globin transcription factor CP2 isoform X2

GO: NA

KEGG:

id description
K09275 TFCP2; transcription factor CP2 and related proteins

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225139.1 True 3134 mRNA 0.45 17 17303211 17315390
XM_043225140.1 False 3092 mRNA 0.45 16 17303211 17315390

Neighbor

gene id symbol gene type direction distance location
csrnp2 csrnp2,LOC107671888,LOC107715040,LOC107594006,LOC107598537,LOC107756414 coding downstream 646 17294178 ~ 17302565 (-)
itga5 itga5,LOC107671874,LOC107697976,LOC107594039 coding downstream 45047 17214599 ~ 17258164 (-)
hrct1 chia,LOC107671898,LOC107594041,LOC107756356 coding downstream 126722 17171113 ~ 17176489 (-)
plxna2 plxna2,LOC107594012,LOC108425528 coding downstream 295925 16832085 ~ 17007286 (-)
LOC122329053 neurog1,LOC107598364,LOC107741101,LOC107664747,LOC107710304,LOC107662038,LOC107563607 coding downstream 621523 16680306 ~ 16681688 (-)
pou6f1 pou6f1,LOC107671889,LOC107715037,LOC107598516,LOC107756417,LOC107697973 coding upstream 1238 17316628 ~ 17330887 (-)
bin2a LOC107671903,LOC107715035,LOC107594002,LOC107697868,LOC107598577,LOC107756358 coding upstream 28712 17344102 ~ 17350948 (-)
racgap1 racgap1,LOC107671897,LOC107594001,LOC107697971,LOC107756422,LOC107714933,LOC107599350 coding upstream 38757 17354147 ~ 17361384 (-)
tmed4 tmed4,LOC107594055,LOC107671834,LOC107715031,LOC107598625,LOC107697966,LOC107707037 coding upstream 118342 17433732 ~ 17438013 (-)
LOC122328974 agmat,LOC107714919,LOC102790280 coding upstream 458015 17773405 ~ 17777920 (-)
G158605 NA non-coding downstream 11668 17289971 ~ 17291543 (-)
G158591 NA non-coding downstream 77642 17152825 ~ 17225569 (-)
G158587 NA non-coding downstream 220527 17082207 ~ 17082684 (-)
G158484 NA non-coding downstream 574868 16728101 ~ 16728343 (-)
G158483 NA non-coding downstream 575496 16727438 ~ 16727715 (-)
G158628 NA non-coding upstream 67952 17383342 ~ 17386554 (-)
G158632 NA non-coding upstream 78631 17394021 ~ 17395422 (-)
G158706 LOC107599375,LOC107715025,LOC107671876,LOC107594031,LOC104946192 non-coding upstream 431140 17746530 ~ 17748502 (-)
LOC122328377 NA non-coding upstream 484452 17799842 ~ 17844102 (-)
G158774 NA non-coding upstream 628535 17943925 ~ 17944160 (-)
slc48a1a slc48a1a,LOC107671836,LOC107598487,LOC107594008,LOC107756371,LOC107697869,LOC107757747 other downstream 118826 17176625 ~ 17184385 (-)
G158336 LOC107716221,LOC107570608,LOC107586536,LOC106567035 other downstream 944506 16355369 ~ 16358705 (-)
tac3a LOC107708854,LOC107571761,LOC107681951,LOC107586540,LOC107695797 other downstream 1059816 16240810 ~ 16243395 (-)
G158288 LOC107708856,LOC107570569,LOC107716212,LOC107681953,LOC107695729 other downstream 1133377 16143833 ~ 16169834 (-)
G158231 NA other downstream 1294296 16008106 ~ 16008915 (-)
G158609 NA other upstream 23877 17339267 ~ 17343385 (-)
coq10a si:dkey-190g6.2,LOC107671896,LOC107715030,LOC107598614,LOC107697969,LOC102210977,LOC108425511,LOC102797363 other upstream 98313 17413703 ~ 17422517 (-)
march9 march9,LOC107593952,LOC107664138,LOC107714987,LOC107706970,LOC107599679,LOC107697857,LOC107088728,LOC108433385,LOC103130462,LOC105930772 other upstream 730536 18045926 ~ 18058739 (-)
hnrnpa1b hnrnpa1b,LOC107664187,LOC107714994,LOC107707002 other upstream 916253 18231643 ~ 18235536 (-)
hoxc1a LOC107598919,LOC107707004,LOC107697929,LOC107594049,LOC107664160,LOC107714959 other upstream 980656 18296046 ~ 18302575 (-)

Expression


Co-expression Network