LOC122329002 (LOC107737588,LOC107712700,LOC107672031,LOC107699598,LOC101884357)


Basic Information

Item Value
gene id LOC122329002
gene name LOC107737588,LOC107712700,LOC107672031,LOC107699598,LOC101884357
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 12076253 ~ 12098773 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225149.1
CCCAACCGAAGTGGAGACATAGACGACAGCAAATGGGAAGTGAGTGACCGGGACTCAATGTGTTAACATCCCTTACCTGTGTGGAATGCGCCAGGTACACGCTTCAGCTTCAGGTCTTTAACTGAACCCAGCGCGATCATGATGGCCCACAGCTGTCCTTCCGTCCTTTCAGAGCGAAACACACTCATCCTGGTGACGTTTCTCCTAATGCTGGTGTCTGAAGTCCATTCCCAAGGCCGTCTGAAGCTGACTGTTCTGTCTGAAGATCGGCTGCAGATGAAATGGAAGGAGGCGGAAGGACCAGTGCAGGGCTATAAGGTCCGTGTGCGGCCCATCACAGAGGTTCCTCAGCCAGAGCTGATGCTCACAACTACACGTGGCCGGGCCACGGTGGCAGGCCTGGACCCCAGACAGGAGTATCTCCTACAAGTTATGGTGCTCAATGGGACACTGGAGAAACTCATCGCAAAAAGACGCTTTACCATCGATGGGTTGCGTGAGGAAGAGTTGATCCGCAGCGGAAACAgggagcagaagaagaagactCACTCCActggctctggatctggagagATGGATGACGTGACGGAGGCTCTAGCAGCCCTTCCCACTGTCCTCTACCGAGAACCAACGACTACAGAGCCTCCTGCTGTACCCGAGATTGAGCCAGAAGTTGACAGAAAcaccaaagaaaagaaaaagaaaaaagacaagaatCGATCCAAGGCCGAGGATAAAAACGATCAAGAAGAAAATGGAGGGAAGTCAGTGAAAGAAGAGGTCACCAGCACcaacaaacagagaaaaaccTCCCCAACCCAAACAGTCACGGCTGTTTCCACACGAAAGCCGTTTGAATGCGGCGCTGGAGCTCAGGCTGATCTGGTCCTTCTGGTGGACGGATCCTGGAGCATCGGCCGCACAAACTTCAGAAAAGTGCGTGACTTCCTGGAGGGCCTGGCTGTCCCCTTTCACATTGGGCCACAGGGTGTGCAAATAGcatTATCTCAGTACAGTGGAGATCCACGGACAGAGTGGCATCTTAATAACTTCACTTCTAGAGAGCCACTTCTGGAGGCCATCAGAAACTTCAGATACAAGGGAGGCAACACTTTCACAGGCCAGGCTCTCATACATGCTCTTGAGAACAATCTGAAGGAGGAGGTGGGGGCGCGACCCAACACCCCACAGTTCCTGCTGCTGTTGACTGATGGCAAATCCCAAGATGATGCCATTGCTGCAGCCAACAGGCTGAAGAATGCCGGTGTAGAGATCATTGCTATAGGTGTGAAAAATGCAGACGAGGCAGAGCTGAGGCAGGTGGCATCTGAACCGCTGGAGCTGAATGTGTATAACGTGAATGATTTTCCTCTGCTCAGTAAACTGGTGGGAAGACTAGCACGCATTCTCTGCGGCAAGATTGAAGACCGTATTAAAGCGAAGAGAATGGAGCGCCCCACTCAGGACCCAGTTCTGTCTTATCCCAGCCCAACTGACCTGCAGTATCTAGGCCTAGGCTCGAGAGAGGTGCGGCTGCGTTGGACCGTCCCCAGCAAAAGTCCTCAGCAGTACAGAGTGGTGTACCACACCGCTGAAGGACAGAGTCTGAAAGAGGTAGTGGTGAATGGAACAGGCTCCACAGTTCTGCTGACAGGACTGTCCTCACAGACCCAATACCACCTGTCCATCTTTCCTGTCTATGAGAACAATGTGGGCTCTGCTCTGAGAGGCACCTTCACCACATTACCACTGGCGATACCTGCGGCTCTAGAGGTCACCGCCTCCTCCCCCAGCAGTCTGCGGGTACGCTGGCAACCGGCCTCTGGAGCCACACAGTACATGGCCTTATACTCAGCACTCAATGATGGAGAGCCTGATGATGCCAAAGAGGTGAAGTTTGGACCTGCTCAGACGGATGTGGAGTTGGTGGATCTGATGCCATCCACAGATTATTCAGTCACACTTTATGCTTTATATGATGAAGACCCCAGTGACCCAATAACAGCCATCGGCACCACCTTCCCACTGCCGTCTCCTCTCAGTTTGCAGTTTCCCATGGTCAGTCACAGCACTCTAAAGGTCACATGGGTCCCTGGAGCTGTGGATGTTCCTGCGCACCGCATCGTCTACAGCACCAATCACGGCAGTGACGTCAAGCAGgTGGAGGTCAAAGGTGTAAAAACGGTGTTGCTGCAGAATCTGTCTTCCCTCTCCAGGTATCTGGTGTCGGTTCAGTCTCTCTATGAAAAGGGCCTGTCCACTGCTATCACAGCCAACGTCACCACCTTAAGAGTCCCAGCTCCCTCGGATCTGAGAGTCACTAACTTCTCTGGCAGTGACATAACAGTGCGATGGGAAGCGGCGGCAGATGACGTGGTTTCTTATCTCATCAAATGGATCTCGCTCAGTGAAGGCAACCTCAAGCAGTTGACGGTAGATGGGGAGGGTGAAGGGGCAATCTTGGAAGAGGTTGAGGAAGATAAGGAATATCAGATTTCGCTTTCCGCGTTATATGCCGATGGCGCACAGAGCGAGGCAGTGGCCATACGATACAGCACCTTATCTGGAGGTGGTCCGAGCAGTTTGTCTATCTCAGAGGAGACAGCAATCAGCATGCTGGTCACCTGGGTTCATCCCAATGCCCATGTGCTGCAGTACCGTGTGTCGTATACTCCACTCAATGGAGATGCGAGGGAAAACACAGTGTCACTGCCAGGCAGCGAGAGGCGCGTCCTGCTGCAGAATCTGCTGCCTGACACTCGTTACAGTGTGCTGGTGACGGCTGAGTACCGCAACAGAGAGGGCGGCAGCGCCTCAGCCCAGGGGAAGACCACCAGTCTGCGGGTGAGCAGCGTGAGCGTGGTGCGGTCTGACCACTCCAGTATATGCGTGTCCTGGAGGCCCGTGCCAGCGGTCACTGGTTATCGCATAGTCATCCAGGCCCTCAGAGATAAACAGACTAAAGAGGGAATAGTAGATGCTGCTAGCAGCAGTCACTGTTTCTCCGAGCTACAGCCGGAAACGGTCTACCGCATCAGCGTGCACTCCCGTGTGGGGACAGTAGAGGGCGCTGCGGTCACTATCCTTCACCCGACAGCAACCGCTCCGGTGAGAATTCAGGTTCCTCCTCGGCTGCATCCTGTACAAAGAGAAGtgtGTCCTGAGACAACAGTCAGAAATCATGTGGTCAAAGGCTTTGACATGATGGAAGCGTTCGGTCTAACTCAGAGAGCACACTCTACTATTGAGGGAGTGGCAGCTGAACCTTTCATCTTCAGCACTTTACCCAGTTACACCCTCTACAGAGATGTACAGCTGACCCAGAGCACAGGCTTCATTCATCCGGCTGGCTTCTCTCCAGAACACACCATCAGCATGGCCTTTAGGCTCCTGCAGGATTCACCCAGGGAGCCCTTCGCCCTCTGGCAGCTCACGGACAACGACTTCCAGCCCAAGATGGGGGTGGTATTGAACCCTGAGAAGAAGGTTCTGCTGTATTTCAGCCTGGACTACAGAGGAGAGATACAGGAATTGACTTTTGACCAGCCACAAGTCCACTCAGTTTTCTATGGAAGCTTTCATAAGATCCATTTGTCAGTCAGTCAGGTGAGTGTATCTCTTTCTGTGGACTGCCAGAGGGTTGGCGAAAGGCCCGCTCGCCCCCTGGGAACTCTGCCTACTGATGGTTTTGAGATGTTGGGCAAACTAGTAAAGACACGTGGACCTCACAGTGGATCTGCGGCATTCCAGCTGCAGTCCTTTGAGATTGTGTGCAACACTACTTGGGCATCAGAAGACAGCTGCTGTGATCTGCCCTCACAGAGAGACGAGGAGAGCTGTCCTGCCCCTGCTTATGCGTGCACCTGCACCACCGACGTCTCTGGAGCACCTGGAGACACCGGGCCACCTggGAGACCTGGCCCTCGTGGGGAGAAGGGAGAAAAAGGAGAGGTGGGACAAAAGGGAGAGGTGGGCCCACCTGGTAAACCAGGCCCTGAAGGCGGCTTTGGCGCTCTTGGACCCGCTGGTCCACGGGGAATAGCTGTAATGGGCAAAGTGGGCCCACCAGGAGCAAGAGGGGAAAAGGGAGATATTGGAAGGCCTGGGAGTCAGGGTCTACCAGGGCCTCCTGGTGCAAAAGGTGAAGAGGGCATGCCTGGTCCTAAGGGCACCAGAGGACTGGAGGGTAACATAGGTAGCCCAGGAATAACAGGCCCTAGAGGCTTCCAGGGTATGCCTGGTCATCCAGGGCCAGTGGGAGAAAGAGGGCCCTTAGGTCCCGTAGGGCCCACCGGTCTTCCTGGAAGTAAGGGCGAGAGAGGAGAGAAGGGTGAGCCACAGTCTCTTGCCATGATCTACCAGCTTGTTACACAGGCCTGCGAAAAACTTGTGCACAATGAAGTGCTGAAGATGGATGCTTTTCTGAATGAGATGAATCGAAAGCCAGTGCCCATCCAGGAACCAGTAGCACCACCGGGAGAGCCTGGGATACCTGGGGGAAGGGGGCCACCTGGATCCCGAGGCCCTCAGGGTCGACAAGGAAGCAGAGGGGAGTCTGGAAAACCAGGGTACCCTGGAGAGCAGGGGCGCAGAGGGATGCCTGGTGAGAAGGGCTCTCCAGGAGCAAATACGGTGGGGCCGCaaggaataaaaggttttgCAGGACCTCCAGGTGAAGCTAAAATAGGGGAACCGGGTCCCAAAGGCGAGAATGGTAACGTAGGACCTCCAGGTATTTCAGGAGCTCCAGGTCAGCAAGGAGAAATGGGACCTCCTGGTGTATGTGACAGCAGTGGATGTTATCAAGGACCCCCGGCTGCAGAGGATCCATACCCTGGATACCAGCCTTGAGTCACTGAGAAGTAACCGTTCTACTTCAGCACTGCCAGAATCATCTCTTCCCCAAAACACTGTGTGACTTTAGTGGATAAAGAGATTCTGCCAGATGTTGACTTTCAGTGAGCCAGCCGATGGACTcttttgactttattttctgCTGATCTCAACACAATACTCCCATTATGAGATCACCAAAGCACTGATCATCCTTGACCCTGTCTTCTACCCAGTATTCAACCTGATCTACTGCTTCGAAACTGCAGTAGATGCATGTGCAGCACAGAGGAAATCACAACACAGACTCTATTCTACAGAGATATTTTGGTTACCAGATGAGGAACTAGTGTCTTATTGGAAATACGGCTAAAATCCGCACTAAGAATGTTTCTAATATTTgacttctaaatattttattgtatttaatgcactgtttgtgttttaaatgtatattgttgAAGGCATATTACTTTCAATCTTTTATATTCCTGTTTGACTTATTACTTCTGGTTTTTgtatcaagtgtttttttttgttttgtttttttaaatatgaaaataagcaATATTTTGCAAGAGCAATATGTATGTTACTATGAAATACACTgtgatattatgtttttttggtttttacataTGCAGAAGTGCTGTCCATAGTATTTTATAGAATTATACTAAGTGAACTGGTCTTTTGTTATTGTGTTAATATACATGTTTAGGTAAATCTTTATGAAATGAAACTGTTAAAGATCAAAAGCGTTGACTCACCTGAGATCCATCATGCTGTCTCTAGGAAATGGTTACTCTTCACgttcactgaaaaacaaaatgaaataacgGAAAAATTTACATCACTTGTTTACAAAAATACCAATTTAATAAGCAATAACAGCAGTTAAATCACTcatggagtttttttttttttaaagctaaatatattttttgctgtgGTATAGTTTCAGATATCTTGCTGAACCAATTAAAATCAACAACAGAACCAGTCTTTTTATCTCACTGTAAATGGCATGTAAAGTGTAATGGATATCATTGTTACTCATAGTTGCCAAATGAACCACACACT

Function

NR:

description
PREDICTED: collagen alpha-1(XX) chain-like

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K24357 COL20A; collagen type XX alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225149.1 True 5916 mRNA 0.50 42 12076253 12098773

Neighbor

gene id symbol gene type direction distance location
slc35c2 slc35c2,LOC107737589,LOC107712705,LOC107672033,LOC107699599 coding upstream 1788 12067105 ~ 12074465 (+)
tnnc2.2 tnnc2,LOC107699597,LOC107593400,LOC107672048,LOC107737590,LOC107568846,LOC108276484,LOC108233126,LOC108434847,LOC102220434 coding upstream 11912 12061716 ~ 12064341 (+)
tnnc2.1 si:rp71-17i16.4,LOC107737591,LOC107568845,LOC103044939,LOC108434838,LOC103362008,LOC102782874 coding upstream 15891 12048761 ~ 12060362 (+)
tnnc1b tnnc1b,LOC107671989,LOC107568847,LOC108276054,LOC107593406,LOC105890642,LOC103374679 coding upstream 151658 11922884 ~ 11924595 (+)
cfap126 NA coding upstream 207816 11866718 ~ 11868437 (+)
dpm1 dpm1,LOC107671953,LOC107737709,LOC107712706,LOC107699600 coding downstream 249 12099022 ~ 12101573 (+)
adnpb adnp,LOC107737587,LOC107672026,LOC107565825,LOC107593398,LOC107699602 coding downstream 3544 12102317 ~ 12111181 (+)
camkvl LOC107737586,LOC107672037,LOC107712704,LOC107593397,LOC107565838,LOC107699603 coding downstream 14973 12113746 ~ 12156300 (+)
uba1 uba1,LOC107737583,LOC107672015,LOC107565837,LOC107593395,LOC107699604 coding downstream 58724 12157497 ~ 12174386 (+)
arhgef3l arhgef3l,LOC107699573,LOC107712679,LOC107593396,LOC107565836,LOC107737584 coding downstream 76556 12175329 ~ 12182648 (+)
LOC122328486 NA non-coding upstream 38365 12030146 ~ 12037888 (+)
G156881 LOC107737595,LOC107671985,LOC107568839 non-coding upstream 103331 11946684 ~ 11972922 (+)
G156843 tktb,LOC108410447,LOC107671986,LOC103046877,LOC107737598 non-coding upstream 149878 11827741 ~ 11926375 (+)
G156823 LOC107560942,LOC107737604,LOC107712727,LOC107672007 non-coding upstream 253409 11763707 ~ 11822844 (+)
G156828 NA non-coding upstream 341316 11734256 ~ 11734937 (+)
G156933 NA non-coding downstream 75757 12174530 ~ 12174915 (+)
G156931 NA non-coding downstream 105483 12204256 ~ 12205395 (+)
G157079 NA non-coding downstream 141076 12239849 ~ 12241401 (+)
G157081 NA non-coding downstream 147101 12245874 ~ 12246101 (+)
G157084 NA non-coding downstream 254317 12353090 ~ 12386381 (+)
kctd6b kctd6b,rpl10,rl10,LOC107671957,LOC107570288,LOC107737715,LOC107560935,LOC108436290,LOC103399204,LOC107672042 other upstream 329683 11697414 ~ 11746570 (+)
LOC122328549 smim4,LOC107560937,LOC107671967,LOC107737614,LOC107712735,LOC107699582,LOC107570283 other upstream 343892 11730980 ~ 11732361 (+)
G156586 NA other upstream 899220 11174421 ~ 11177033 (+)
LOC122328437 LOC107737657,LOC107560901,LOC107671993,LOC108435244,LOC108275530 other upstream 990649 11077154 ~ 11085604 (+)
G156497 trim101,LOC107671958,LOC107560876,LOC107719918,LOC107656995,LOC107747989 other upstream 1152265 10913904 ~ 10923988 (+)
LOC122328708 LOC107737579,LOC107672049,LOC107565833,LOC107712694,LOC107687392,LOC566587,LOC107593419 other downstream 147420 12246193 ~ 12251982 (+)
c1qtnf12 fam132a,LOC107591142,LOC107716139,LOC107593919,LOC107687484 other downstream 1995305 14094078 ~ 14126201 (+)
si:dkey-151g10.3 LOC107737519,LOC107716153,LOC107593909,LOC107668334,LOC107673054 other downstream 2200928 14299701 ~ 14343274 (+)
pkig pkig,LOC107737509,LOC107673080,LOC107574720,LOC107564651 other downstream 2505020 14603793 ~ 14636817 (+)
itih6 LOC107737505,LOC107673092,LOC107574689,LOC107695841,LOC107716181,LOC107564649 other downstream 2510756 14609529 ~ 15153978 (+)

Expression


Co-expression Network