tnnc2.1 (si:rp71-17i16.4,LOC107737591,LOC107568845,LOC103044939,LOC108434838,LOC103362008,LOC102782874)


Basic Information

Item Value
gene id tnnc2.1
gene name si:rp71-17i16.4,LOC107737591,LOC107568845,LOC103044939,LOC108434838,LOC103362008,LOC102782874
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 12048761 ~ 12060362 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225156.1
TTGTCCAATCCTAGCCATTTTCTAGAACAGTGAGAATTATATGAGGTCTTATTAGGAGAGTCTGGAGACGTACGGATAAGAGGAAGACTGGTGGACAGAAGACTGTTATTGTTTTCAGATCCGCTTTGTTCTCAATAACAAGCTGTCAATATGCCAACTGATGCCCAGAATGACGCTCGCTCTTTCCTGAGTGAGGAAATGATTGCTGAGTTCAAGGCTGCCTTCGACATGTTCGACACTGATGGTGGCGGTGATATCAGCACCAAGGAGTTGGGTACCGTCATGAGGATGCTGGGTCAGAATCCATCCAGAGAGGAACTGGATGCTATCATTGAAGAAGTAGATGAAGATGGCAGTGGCACTATTGACTTTGAGGAGTTCTTGGTCATGATGGTGCAGCAGCTAAAAGAAGACCAAGCCGGCAAGACTGAGGAGGAACTATCCGAATGCTTCCGTGTCTTTGACAAGAACCAAGATGGTTTCATTGATCGTGAAGAGTTTGCTGATATCTTGCGTGCAACTGGTGAGCCAGTGGCAGAAGAAGACATAAATGAACTCATGGCCGATGCAGATACAAACAAAGACGGGAAGCTTGATTTTGATGagtttCTTAAAATGATGGAGAACGTCCAgtaagaaaaaataacattccATCTCTTCCAAGTGCTAATGACAGCAGTCAAGACTCCCAAGAACAACCCATGCTGAGATGTTTAAAGGAAAAAGACTCTGGTTCAGATCACTAATAACAAAGATAGGCTGGAATTTGATTTGAGGGACAGAGAATATTATAGATCAGTGCCATCTTGTTGGAAGTGTTCTTCTGGGACCACACTGTGATGGTATCTATAAATAACCCTTCAAACCTTTTAAGAGGAAACCACTTACGCCTCTCCCTTCAGCTGTCTGCTACTACACCTGCTTATTCCCAAGACATTCAGCAAGTTTCCTTCAAACCCCTTCCCCTCTCCTTCACCCTTTACATTGATTCAAAATAACTACAGCATTAGCCACGGAAAAAGACTTAATGTTGTCATGGCGATACGGAATCTCTTTAGCTCACATGTAAGCGGCGTATGCAAATCTATTAAAGAAGCACGTCTTGGCCAA
>XM_043225157.1
CGAAGGGCGGTAAAGCACGTGGGAAACGCATTTGGGCGACGACGAGCGCTTTCGCGGCAGCTTCGGGAGTTTGACGGCGCGAGGCGAGCACTTGTTGCGCCTGCACGCGCTGTGCCTCGAGAAAAGATGCAGACAGCCAACTGATGCCCAGAATGACGCTCGCTCTTTCCTGAGTGAGGAAATGATTGCTGAGTTCAAGGCTGCCTTCGACATGTTCGACACTGATGGTGGCGGTGATATCAGCACCAAGGAGTTGGGTACCGTCATGAGGATGCTGGGTCAGAATCCATCCAGAGAGGAACTGGATGCTATCATTGAAGAAGTAGATGAAGATGGCAGTGGCACTATTGACTTTGAGGAGTTCTTGGTCATGATGGTGCAGCAGCTAAAAGAAGACCAAGCCGGCAAGACTGAGGAGGAACTATCCGAATGCTTCCGTGTCTTTGACAAGAACCAAGATGGTTTCATTGATCGTGAAGAGTTTGCTGATATCTTGCGTGCAACTGGTGAGCCAGTGGCAGAAGAAGACATAAATGAACTCATGGCCGATGCAGATACAAACAAAGACGGGAAGCTTGATTTTGATGagtttCTTAAAATGATGGAGAACGTCCAgtaagaaaaaataacattccATCTCTTCCAAGTGCTAATGACAGCAGTCAAGACTCCCAAGAACAACCCATGCTGAGATGTTTAAAGGAAAAAGACTCTGGTTCAGATCACTAATAACAAAGATAGGCTGGAATTTGATTTGAGGGACAGAGAATATTATAGATCAGTGCCATCTTGTTGGAAGTGTTCTTCTGGGACCACACTGTGATGGTATCTATAAATAACCCTTCAAACCTTTTAAGAGGAAACCACTTACGCCTCTCCCTTCAGCTGTCTGCTACTACACCTGCTTATTCCCAAGACATTCAGCAAGTTTCCTTCAAACCCCTTCCCCTCTCCTTCACCCTTTACATTGATTCAAAATAACTACAGCATTAGCCACGGAAAAAGACTTAATGTTGTCATGGCGATACGGAATCTCTTTAGCTCACATGTAAGCGGCGTATGCAAATCTATTAAAGAAGCACGTCTTGGCCAA

Function

symbol description
si:rp71-17i16.4 Predicted to enable actin filament binding activity; calcium ion binding activity; and calcium-dependent protein binding activity. Predicted to be involved in regulation of muscle contraction and skeletal muscle contraction. Predicted to be part of troponin complex. Orthologous to human TNNC2 (troponin C2, fast skeletal type).

NR:

description
PREDICTED: troponin C, skeletal muscle isoform X1

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K12042 TNNC2; troponin C, skeletal muscle

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225156.1 True 1110 mRNA 0.43 6 12053374 12060362
XM_043225157.1 False 1093 mRNA 0.46 6 12048761 12060362

Neighbor

gene id symbol gene type direction distance location
tnnc1b tnnc1b,LOC107671989,LOC107568847,LOC108276054,LOC107593406,LOC105890642,LOC103374679 coding upstream 124166 11922884 ~ 11924595 (+)
cfap126 NA coding upstream 180324 11866718 ~ 11868437 (+)
emd LOC107737610,LOC107671981,LOC107712726,LOC107560939,LOC107699568,LOC107570273 coding upstream 248845 11796494 ~ 11799916 (+)
flna flna,LOC107737611,LOC107712729,LOC107570276,LOC107699576 coding upstream 254028 11762429 ~ 11794733 (+)
dnase1l1 dnase1l3,LOC107737612,LOC107672041,LOC107560934,LOC107570280,LOC107712731 coding upstream 306890 11738795 ~ 11741871 (+)
tnnc2.2 tnnc2,LOC107699597,LOC107593400,LOC107672048,LOC107737590,LOC107568846,LOC108276484,LOC108233126,LOC108434847,LOC102220434 coding downstream 1354 12061716 ~ 12064341 (+)
slc35c2 slc35c2,LOC107737589,LOC107712705,LOC107672033,LOC107699599 coding downstream 6743 12067105 ~ 12074465 (+)
LOC122329002 LOC107737588,LOC107712700,LOC107672031,LOC107699598,LOC101884357 coding downstream 15891 12076253 ~ 12098773 (+)
dpm1 dpm1,LOC107671953,LOC107737709,LOC107712706,LOC107699600 coding downstream 38660 12099022 ~ 12101573 (+)
adnpb adnp,LOC107737587,LOC107672026,LOC107565825,LOC107593398,LOC107699602 coding downstream 41955 12102317 ~ 12111181 (+)
LOC122328486 NA non-coding upstream 10873 12030146 ~ 12037888 (+)
G156881 LOC107737595,LOC107671985,LOC107568839 non-coding upstream 75839 11946684 ~ 11972922 (+)
G156843 tktb,LOC108410447,LOC107671986,LOC103046877,LOC107737598 non-coding upstream 122386 11827741 ~ 11926375 (+)
G156823 LOC107560942,LOC107737604,LOC107712727,LOC107672007 non-coding upstream 225917 11763707 ~ 11822844 (+)
G156828 NA non-coding upstream 313824 11734256 ~ 11734937 (+)
G156933 NA non-coding downstream 114168 12174530 ~ 12174915 (+)
G156931 NA non-coding downstream 143894 12204256 ~ 12205395 (+)
G157079 NA non-coding downstream 179487 12239849 ~ 12241401 (+)
G157081 NA non-coding downstream 185512 12245874 ~ 12246101 (+)
G157084 NA non-coding downstream 292728 12353090 ~ 12386381 (+)
kctd6b kctd6b,rpl10,rl10,LOC107671957,LOC107570288,LOC107737715,LOC107560935,LOC108436290,LOC103399204,LOC107672042 other upstream 302191 11697414 ~ 11746570 (+)
LOC122328549 smim4,LOC107560937,LOC107671967,LOC107737614,LOC107712735,LOC107699582,LOC107570283 other upstream 316400 11730980 ~ 11732361 (+)
G156586 NA other upstream 871728 11174421 ~ 11177033 (+)
LOC122328437 LOC107737657,LOC107560901,LOC107671993,LOC108435244,LOC108275530 other upstream 963157 11077154 ~ 11085604 (+)
G156497 trim101,LOC107671958,LOC107560876,LOC107719918,LOC107656995,LOC107747989 other upstream 1124773 10913904 ~ 10923988 (+)
LOC122328708 LOC107737579,LOC107672049,LOC107565833,LOC107712694,LOC107687392,LOC566587,LOC107593419 other downstream 185831 12246193 ~ 12251982 (+)
c1qtnf12 fam132a,LOC107591142,LOC107716139,LOC107593919,LOC107687484 other downstream 2033716 14094078 ~ 14126201 (+)
si:dkey-151g10.3 LOC107737519,LOC107716153,LOC107593909,LOC107668334,LOC107673054 other downstream 2239339 14299701 ~ 14343274 (+)
pkig pkig,LOC107737509,LOC107673080,LOC107574720,LOC107564651 other downstream 2543431 14603793 ~ 14636817 (+)
itih6 LOC107737505,LOC107673092,LOC107574689,LOC107695841,LOC107716181,LOC107564649 other downstream 2549167 14609529 ~ 15153978 (+)

Expression


Co-expression Network