pigt (LOC107724198,LOC107551531,LOC107696980,LOC107705717,LOC107593938,LOC107663065)


Basic Information

Item Value
gene id pigt
gene name LOC107724198,LOC107551531,LOC107696980,LOC107705717,LOC107593938,LOC107663065
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 5886612 ~ 5893723 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225160.1
CCGACCGTTGCTGTGAAATAAAGCAggtttcttattaaaatatttttttaattattaatagctTATTcatcacacacatttactttttacatttacttcgTTTTAAAAGTCCACTGAACGAATTCAAAGCATTTGAATCGCTGGAACTTGTAATTCAGACAGTAATTCAGAGTCGTGTAGCGACAATGAAATTAACTAACTTCACAGGAAATTAGCTTATACCATATTCTCGTTAATCTAGCATTTGTTGTCTAACATAAATGTTCATAATTTAACTgactatttattgtttatatttttttagattctcGCGTCCCATCGGTCATATATCTACATACCCTTCTCTGATTGGTCAACCCTGTCAACGTCATCCAGGAAGTGTGCGCTGCAAGGGAAGCGCTGTGGCGAAAATGGCAGCGCACAGGTACGGTTTGTCTCTAGcgttcattttgattttgtctAGTTTAGTAACCCCCAGCAGCAGTGACACGCTTGAAAAAGCAAACGACAATGCGGAAGAAAAGCAGAGCGTTTCAGACACGCCACGGGAGGTGGACAGCGACGGCAGGGCCGCCGCAGAGGATCTGAATGAAAGGCAATGGCAGTCGACTGATGTTGAGCCGGACGGAAGCGATGGCACCAAAGACGGCGAGTCTtttacagcagcagcagcagcggcgaAAGATCAGTTTCAGGAGGAGCTGGTCATCCGTCCCCTGCACTCCGGGGACATTTATGCCAGCTTCCAGTTCCGCACACTGTGGGACATTGACTTCCTGCAAGAGCGACAGAAGGTGTCTCATTACCGGCTGTTCCCTAAATCCCTGGGTCAAGTGCTCTCTAAGTTTTCGGTGCGAGAGCTGCACATCTCCTTCACCCAGGGCTTTTGGAGGACCATGCAGTGGGGGCAGCCCTTCATCCCCTCTCCACCCGGAGCAGAGCTGTGGGTGTGGTTCCACGACACAGCCAGCGATGTGGATGGAAACTGGAAGGAACTTACCAACGTCCTCTCTGGAATCTTCTGCGCATCTCTAAACTTCATTGACCTGACCAACACCGTGCAGCCCAGTGCTTcttttaaaccactcggcctgGGGAACGCTACAGATCACCGCTTTTTACGTTACGCAACATTACCGCGTGAAATCGTCTGCACTGAGAACCTCACACCCTGGAAGAAGCTTCTCCCTTGTGGTTCTAAGGCGGGTCTGGCAGTTCTCCTGAAGTCGGAGAAGCTGTTTCACAGCAGTTTCCATTCTCAGGCCGTCCACATCAGACCCGTCTGTCAGGATGAACCGTGCACGAGTAAAGCGTGGGAGCTGAGGCAAACTCTCAACGTTGTGTTTGATCTCTACACGTCAGGCCAAGGAAAAAAAGAATGGTCTTTGTTCAAGATGTTTTCTCGGACTTTGACAGAGGCTTGTCCTCTTGCTACTTCCAGTAAAGTCCACGTGGACATCACAGACAACCCCGAGGGGGAGCTGTTCGAGTTGAGTCCTCCGACTTCTCTTCTCAGCCAAGCCGTGGTGCTGGGAGATCGCCGAACATATTCAGTGTTTGACCTGACCAGAGCCGAGACGTTTGGACAGTTACGTTCTCTCAATCTCCTCCTGCGCTGGAAAGGAGACAGTGGCGATATGCTTCGTCCTCTGCTGCATGCGGAGCGATACGTGGCTGGTTTTGGGCTGCAGACGGGGGAAATCCACACCGTCATCTATAATAACCACCCGTATCGGGCCTTCCCTGTGCTGCTGATGGACTCGGTGCCCTGGTACCTGCAGCTGTACATTCACACCCTGACAGTCACCAGCAAGTCCCGTGATAACAAGCCCAGTTACATTCACTACCAGCCCGCTAAAGACCGCCATCGTCCTCATCTGCTGGAGATGCTGGTCCAGTTACCCCCTCACTCTATGACAGAGGTCACCGTACAGTTTGAGAGGGCCCTGCTCAAATGGACCGAGTACACGCCTGATCCTAACCACGGCTTCTACGTTGGGTCATCTGTGGTCAGCGCCCTCGTGCCAAGTATGGTTGCAATGGACACCAACTTCACACAAGACCAGCCGTTGTTTAGCAGTTTCGTCCCAGTCAAAGAAGAATCAAGCTACTTTGTGCGAGTGTACACCGAGCCGCTGCTGGTGAATCTCCCCACGCCTGACTTCAGCATGCCCTACAACGTCATCTGCCTCACCTGCACGGTGGTGGCCGTGGGCTACGGCTCCTTTTACAACCTCCTGACCCGCACCTTCCAGGTGGACGAGCCGAGCCTGCCGCTGGCCAAGCGATTGGCCAACCTCATCCGGCGCATAAGAGGAGTGCCGCTGCTGACCTAAACTCCCGAGAGCAGACCTGACGTCTGAAATGTCCATATTAGGCAGCGGAGAGCACTGTGATGCTCAAAAGGCAGCTGCTTTCCAGCCCTGGAAAGACCCGATGCCAAGTGACGGTTCTGAACTTCTGTTGAACAAATGAGCTACCGAGACGGATTAGacttctttttatgttttgtttgggttttttgaGTCACATAAACACAGATTAGCAAgcttttttgggttttttttttcgttgttgACCTAAGTCAGAAAAACACTACCGTTTCGATTAATAATATTTGAGTCACACAAAGATTATCCACGTTTTTGCTTTTCGTTTTTTTGAGTTCTATACATTAAGTAAAAATTAGCCTCCTCGTTTTGTTTTCGGATCTCTTAAGCGAAGACATTTTTGCACTGTTGTTTTGGAAAATGACACGTGAAGATTTCTTAAAGGAGCTGCATGGTTCGAGCATCTGGGAGAAATATAAGTGGAAGAGTGATGCTAGGTGTACTCCCTTTTGAGAGCGTGACCAGGCCTCATAGACACTCAGACACTACAACCCAACTGCTGAAAGTGGATGTCTCAGAATGTGGCAGATATTTTCCATGTTTTGTAATGCACTGATATTTAAATACGTGTTGTTgtgaa

Function

NR:

description
GPI transamidase component PIG-T-like

GO:

id name namespace
GO:0016255 attachment of GPI anchor to protein biological_process
GO:0007369 gastrulation biological_process
GO:0042765 GPI-anchor transamidase complex cellular_component

KEGG:

id description
K05292 PIGT; GPI-anchor transamidase subunit T

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225160.1 True 2970 mRNA 0.49 12 5886612 5893723

Neighbor

gene id symbol gene type direction distance location
haus8 haus8,LOC107551529,LOC107696953,LOC107663059,LOC107577736 coding downstream 9747 5872294 ~ 5876865 (-)
sac3d1 LOC107663057,LOC107593949,LOC107724183,LOC107696954,LOC107551515,LOC107705659,LOC107705658 coding downstream 14433 5869126 ~ 5872179 (-)
LOC122328332 mrgbp,LOC107705719,LOC107724191,LOC107696984,LOC107693561 coding downstream 21395 5859911 ~ 5865217 (-)
LOC122329222 eef1a2,LOC107724190,LOC107696983,LOC107551525,LOC107705720,LOC107693560,LOC108429306,LOC108276238 coding downstream 27865 5853109 ~ 5858747 (-)
LOC122329283 LOC107696925,LOC107724187,LOC107551517,LOC107594764,LOC107724182 coding downstream 62365 5817641 ~ 5824247 (-)
sycp2 LOC107696925 coding upstream 26050 5919773 ~ 5936063 (-)
ppp1r3da ppp1r3da,LOC107722761,LOC107696952,LOC107593910,LOC107551518,LOC107663071 coding upstream 43909 5937632 ~ 5939803 (-)
ttll9 ttll9 coding upstream 50958 5944681 ~ 5949953 (-)
edn3b LOC107551532,LOC107696951,LOC107705677,LOC107663060 coding upstream 63442 5957165 ~ 5966425 (-)
cntn3a.1 cntn3a.1,LOC107696975,LOC107663068,LOC107705712,LOC107551535,LOC108438208,LOC105900126 coding upstream 135181 6028904 ~ 6084299 (-)
LOC122329299 NA non-coding downstream 223656 5654018 ~ 5662956 (-)
G155238 NA non-coding downstream 338904 5525041 ~ 5547708 (-)
LOC122329300 NA non-coding downstream 455088 5430546 ~ 5431524 (-)
G155157 NA non-coding downstream 773648 5111844 ~ 5112964 (-)
G155156 NA non-coding downstream 789482 5096532 ~ 5097130 (-)
G155308 NA non-coding upstream 297374 6191097 ~ 6191320 (-)
G155388 NA non-coding upstream 455284 6349007 ~ 6351825 (-)
G155413 NA non-coding upstream 590931 6484654 ~ 6484915 (-)
G155391 krt8,LOC107551542,LOC108411779,LOC107727027,LOC105023875,LOC107681390,LOC107568038,LOC107705700 non-coding upstream 591716 6485439 ~ 6499749 (-)
G155392 LOC107559866,LOC107705699,LOC107666380,LOC108429286 non-coding upstream 615992 6509715 ~ 6514093 (-)
LOC122329188 LOC107709248,LOC107687290,LOC107558915,LOC107671882,LOC107572785,LOC107723742,LOC107701749,LOC107549048,LOC107756350 other downstream 390138 5484212 ~ 5496474 (-)
LOC122329286 nav1b,LOC107666060,LOC107595432,LOC107740254,LOC107696445,LOC107587625 other downstream 406790 5477841 ~ 5479822 (-)
G155227 si:zfos-452g4.1,LOC107724183,LOC107663057,LOC107696954,LOC107551515,LOC107705659,LOC107593949 other downstream 431565 5454417 ~ 5455047 (-)
LOC122329181 LOC107601337,LOC107697001,LOC107723119 other downstream 1052092 4827478 ~ 4834520 (-)
LOC122329268 LOC107707377,LOC107673205,LOC107746501,LOC107697018,LOC107601321,LOC107598138,LOC108443130,LOC103026736,LOC106572423 other downstream 1691614 4173914 ~ 4194998 (-)
G155489 LOC107681366,LOC107727023,LOC107705691 other upstream 837128 6730851 ~ 6731886 (-)
rps21 rps21,LOC107666483,LOC107681394,LOC106572905 other upstream 872885 6766608 ~ 6823032 (-)
ccm2l ccm2l,LOC107666505,LOC107551511 other upstream 964284 6858007 ~ 6867300 (-)
LOC122328436 cables2b,LOC107681405,LOC107705686,LOC107551510,LOC107559848,LOC107726996,LOC107666605 other upstream 1071019 6964742 ~ 6981961 (-)
LOC122329304 ccm2l,LOC107666505,LOC107551511 other upstream 1100444 6994167 ~ 7003523 (-)

Expression


Co-expression Network