srms (zgc:194282,srms,LOC107672012,LOC107560891,LOC107657057,LOC107747981,LOC108435233,LOC108276248,LOC107563676)


Basic Information

Item Value
gene id srms
gene name zgc:194282,srms,LOC107672012,LOC107560891,LOC107657057,LOC107747981,LOC108435233,LOC108276248,LOC107563676
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 10874824 ~ 10884303 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225173.1
ccGAAGGCCGTCGGACGTTGgtgaaaatgatcaaaaatggcggtcaacattttaaaaaaccgCTGGCGGGGAAAGAGTTACAGAGATGAACTGTcccaaataatattaaactaatACAAACGAGGTGTGACGTCACCGCCCACGTACAGGCCCCCGATATTTGCGGCGCACCGCCGGTTTAGTACCAAATTAACAAAGGCGTTTTAAACAAGGCTAAACGTAAACGGGAAtaataaacgtgtgtgtgtgtgcgcgtcaaAAACTAAGAGGCCATAATAGTATTTTTCTTCTACATGATATATGCACGCAAACGCGCGTACACGAATCGCAATAAACGCAAACCTTATAGTAAATTTATGATGAGAGGCgagtctaaaaataaacaaataatggtTTCCAGCTCCGAGCGCGCGCTTGCCTAGTGAACAGACGCTCGCGCTACAGGAGACGGGGCTCGCGCGCAGCCAAGTTCACACACTGAGAAGCGTTTTGCTCCGGAGCGGATAGAGGCACCGAATGCTGCGGCGCACTGCACCGGTCATTATGAGAGAAGAGGGGCGTCGTGGACGAGTAGAGCCCAGTTCTTCAAGGTACTTCTGCGGCAGCATCCTCTCCTCGTCTTAACGTCTCACTGAACTACCCAACATGTCTTTTCCGCATACCTCTGTGATCCATCCCGAAACAGAACCGGTTTCACCTGATCCTCCGCTATGATCGCGGCCAGCGCGTTTGCTCAACAAAAGGGATCCCGGTATAGAATCGCTACGGAAGGTCCGTCACCGTCGGTGAGGGACCCACGCAcctcttttattttcaatttcaacCGTTTCGCTTGGTGGACGGCTGCCAAATATTCTGGCTACCCTGGAGTCCGTAGAAAGCGAGGGCCGGGATGGAGAAGTGTTGTCGCAGCTGTATGCCTTGTCTGAAGGCGCTGTGGGACTGCATATGGCCCGAGTTTTACTATCCGAGCATGGCTCGACCGGCCGAGATCCGCACGATTTCGGGTGATATCCGGGTCCCGGCTCCGAAGAGGAAACCGGCGCAGCTGTACGCGGCGCTCTTCGACTTCGAAGCCCGCAGCGAGGAAGAGCTGACGGTGAGAGAAGGGGACAAGCTGTCTGTCATAGAAAAGAGGGGAGATTATGTGCTTGCCAAGAAGCTGACGGGGTCCCTGGAGTCCGGATTGGTCCCTGCTAATTATGTGGCCCTAGTACAGGATGAATTCGCTAACTACAGATGGTATTATGGGAATATAAACAGACAAAAGGCCGAGAAGCTGCTCCTGAGCTCACAGAACAAAACTGGCTCCTTCCTGGTGAGGATCAGTGAGAGCCACAGCGATGAATATACTATCTCAGCCAGAAGTGAAAATAGCGTCTTCCATTTCCGTATTCATCGCTCACCGATTGGTGCTTACTTTGTATCTGACAAGATCTCTTTTGGCACACTGGATGAACTCATCAGATACTACCAGCAAAACTCCAGAAGTCTGGGATGCCCCTTAGACCAGCCATGTGAACAGCAAAGAGAGTTGTTTGACATGGAGCCGTGGGAGCGGCCGAGGGAGGAGTTTCAGCTACTCAAGAAGCTGGGGGAGGGCCATTTTGGGGAAGTCTGGGAAGCTGTCTGGatcacaaagaaacaaaaagtggCCATCAAGATGCTCAAACAAGAGGACACAAAATTGGATGAGTTTGTGAAGGAGGTCCATGCACTGAAGAACCTGCACCATCCCAAACTGATCGAGCTGCTGGCTCTGTGCACTCGAGGGGAGCCGGTCTACATTGTCACTGAGCTCATGACTAAAGGAAGTCTCAAATCATATCTTGCTTCGCCGGAGGGTCAGGTGTTGACCTCTGCTCACCTGATCTACATGGCTGGTCAGATAGCAGAAGGAATGGCGTACCTGGAAGATCGACACATTGTCCACAGGGACCTTGCCGCTCGAAACATCCTGGTCGGAGAAGACCTGGTGTGTAAAGTGGCTGATTTTGGTTTGGCTCGCATCATTAAGgataGTGTGTATACTGCTAGTAGAAGCACTAAGATTCCTGTGCGGTGGACGGCTCCAGAAGCTGCTCTCTATCAGCGTTTCTCCGTCAAATCTGACGTCTGGTCCTTTGGAGTGCTGCTGTATGAGATGATGTCACGAGGAAAGATGCCATATGATGGGAAGAATAATAAGGAGGTGTTGGAGATCCTGTCCTCGGGTTACAGGTTACCGTGTCCGAATCGCTGCCCCCCAAACATCTACCGCATTATGCTGGAATGCTGGCACGGGGAGGCCTCCAAACGACCCTCGTTTCATGCCCTTCACAGTCAGATGGAAAATATCTACTCCAGGATCTACTTCAAGACCATCGAGGTGTAGAAGACTAGACCGAAACAGAAGATTTTGTGGGAGGACGAAGAAAAGATTTGCATGGACAAAAGTGCACAGACTCTCTTTGTGATTGCTTATATTAACGAAGTTATGTGCAATAATTAATGCTTGTTTAAGGATTTTAAAGACAGGATCAGAGATTCATCGACGGTTGAGAAGAGAAACACGCGTCTCCTTAATCTGACAGGGCCAGATTAATTGTAGCTAGTTATAGCGAATCTCGATCATGATTGGATCAAGACGCCGAGCACTGTTATTTACCGTcatgataacaataatagtCTTTTAGACTGCACTTAGTGTATTTTGCGTGCTAGAGTTGATCCGGCCCGTTCAGTTTCTGTAGTTAATAGGTACAGGAGATTATTTGATCTGATGTTTTCAGGTCAGAGTTTATGTTTACAAAAGATTCACCTGCCGAGGACAGGTGTTGAGAAGGTGAAAACTATGGCCATTTTAAGTTCAAACTGTCGAGTGTCTTGTGCCTATGTGAAGGCAGGCTGCACAAATAACCGTACCAGGTACACGATCTTGAAATCAACACTGTGGTTAACACAGGAGCCATACGACAAAACTACCTGGGTAGGTGTCCTCATGATCGGTTTCGTAGAAATCACATCCATGTCAGAAGTCAATTGTCTTCCAATGAATTATACAAGATGAATTCCTAAGACAACtcttgtgaataaaatattttttcagta

Function

symbol description
zgc:194282 Predicted to enable non-membrane spanning protein tyrosine kinase activity and signaling receptor binding activity. Predicted to be involved in cell differentiation; innate immune response; and transmembrane receptor protein tyrosine kinase signaling pathway. Predicted to act upstream of or within protein phosphorylation. Predicted to be extrinsic component of cytoplasmic side of plasma membrane. Orthologous to human SRMS (src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites).
srms Enables protein tyrosine kinase activity. Involved in peptidyl-tyrosine autophosphorylation. Located in cytoplasm.

NR:

description
PREDICTED: tyrosine-protein kinase SRK3-like

GO: NA

KEGG:

id description
K08895 SRMS; tyrosine-protein kinase Srms

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225173.1 True 3090 mRNA 0.48 8 10874824 10884303

Neighbor

gene id symbol gene type direction distance location
nol4lb nol4lb,nol4l,LOC107672011,LOC107563666,LOC107657055 coding upstream 4073 10786884 ~ 10870751 (+)
commd7 commd7,LOC107671961,LOC107603136,LOC107747977,LOC107719919,LOC107563668 coding upstream 102625 10765862 ~ 10772199 (+)
LOC122328564 LOC107707753,LOC107672006,LOC107603149,LOC107657067,LOC107559477,LOC107747970 coding upstream 216077 10646963 ~ 10658747 (+)
LOC122328734 sdcbp2,LOC107657068,LOC107672005 coding upstream 308167 10555276 ~ 10566657 (+)
LOC122329231 LOC107656551,LOC107708819,LOC107570956 coding upstream 425493 10447808 ~ 10449331 (+)
ptk6b LOC107719912,LOC107672013,LOC107747980,LOC107657056 coding downstream 163 10884466 ~ 10892545 (+)
trnae-cuc_40 NA coding downstream 17766 10902069 ~ 10902140 (+)
gid8b gid8b,gid8,LOC107560896,LOC108266002,LOC101169608,LOC108276161,LOC108231957,LOC106566597 coding downstream 50660 10934963 ~ 10938573 (+)
slc17a9b slc17a9b,slc17a9,LOC107563661,LOC107560897,LOC106600547 coding downstream 55092 10939395 ~ 10948900 (+)
rnd1a rnd1a,LOC107657046,LOC107737660,LOC107563659,LOC107560900,LOC107672025,LOC103027302,LOC108435239 coding downstream 156777 11041080 ~ 11049656 (+)
G156432 NA non-coding upstream 146594 10727933 ~ 10728230 (+)
G156431 NA non-coding upstream 147660 10726918 ~ 10727164 (+)
G156417 NA non-coding upstream 171731 10702729 ~ 10703093 (+)
G156413 NA non-coding upstream 178266 10696302 ~ 10696558 (+)
G156398 NA non-coding upstream 200676 10666861 ~ 10674148 (+)
G156551 NA non-coding downstream 149488 11033791 ~ 11035495 (+)
G156572 NA non-coding downstream 239789 11124092 ~ 11126634 (+)
G156568 NA non-coding downstream 264560 11148863 ~ 11152047 (+)
G156590 NA non-coding downstream 326738 11211041 ~ 11243036 (+)
G156592 NA non-coding downstream 334732 11219035 ~ 11313603 (+)
G156414 LOC107707743,LOC107747988,LOC107671949,LOC107559475 other upstream 173929 10698798 ~ 10700895 (+)
G156399 LOC107707753,LOC107672006,LOC107603149 other upstream 302578 10563344 ~ 10572246 (+)
LOC122329061 fkbp1ab,fkbp1a,LOC107707744,LOC107657066,LOC107747971,LOC108435222,LOC107559476,LOC100705189,LOC105013763,LOC101476936 other upstream 320104 10551097 ~ 10554720 (+)
LOC122328447 LOC107603155,LOC107707751,LOC107672009 other upstream 356073 10514979 ~ 10518751 (+)
LOC122328383 tbx15,tbx18,LOC107712261,LOC107708785,LOC107656541 other upstream 447662 10415663 ~ 10427162 (+)
G156497 trim101,LOC107671958,LOC107560876,LOC107719918,LOC107656995,LOC107747989 other downstream 29601 10913904 ~ 10923988 (+)
LOC122328437 LOC107737657,LOC107560901,LOC107671993,LOC108435244,LOC108275530 other downstream 192851 11077154 ~ 11085604 (+)
G156586 NA other downstream 290118 11174421 ~ 11177033 (+)
kctd6b kctd6b,rpl10,rl10,LOC107671957,LOC107570288,LOC107737715,LOC107560935,LOC108436290,LOC103399204,LOC107672042 other downstream 813111 11697414 ~ 11746570 (+)
LOC122328549 smim4,LOC107560937,LOC107671967,LOC107737614,LOC107712735,LOC107699582,LOC107570283 other downstream 846677 11730980 ~ 11732361 (+)

Expression


Co-expression Network