lmbr1l (lmbr1l,LOC107708860,LOC107681941,LOC107716206,LOC107695807)


Basic Information

Item Value
gene id lmbr1l
gene name lmbr1l,LOC107708860,LOC107681941,LOC107716206,LOC107695807
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 16024223 ~ 16038514 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225199.1
GAGCGTCCGAACGCTTCATTTGTAGAGCATCTGTGAGCACGCTGGCTCGAAGACTTTCACGGTGTTTTAAAAATTCCCTGTTTGCGGGGGATTAATCATTTCAGAAGCAATTATCCACCTCGGTGAAGTAAGACAGGACTAGTTCGGTGGCTTCGGCCAAAGCAGCCGCGATGCGTTTGGAGGTGGACAGCGTTTGTTCGCTTTAACTTGAGACAAGTTTCCACGTAGGCTATTATCTTCTCGGAGACTCAAATGGTTCACAACTTACACCAGAAACGCGTCAAGACATGGTTTCAAAGCATGGAAACAGAAGACGTGACGGTTAGAGAGCAACTATTCCACGACCGAGTCCGAGaaaccattattTGCGTGCTACTTTTCATTTGCCTGTACATATTGTCTCACTTCATTCTCACGCACTTCAAGAAGAATGCTGAGTTTGTCACCGATGACATTGAGGATGCCACTGTTAACAAAATTGCGCTGTGGCTGTGTACATTTACACTCTCAGTGGCCGTATGTGCAGTGCTGCTCCTGCCCATCTCCATCCTGTCCAATGAAGTTCTACTCACATTCCCACACAGCTACTACATGCAGTGGCTTAATGGCTCACTCATCCGtgGCTTGTGGAACCTAGTCTTCTTATTCTCAAACCTTTCATTGGTGTTTCTCATGCCATTTGCCTATTTCTTTACTGAATCAGAAGGATTTGCTGGGTCcagaaagGGCATTATGGCGCGGGTCTATGAGACTGCTGTAATGTTGCTGCTGCTTAGTCTGCTGGTTTTGGGCATCGTTTGGGTGGCATCAGCCCTCATCCATCACAACACTGCCCGTGAGAGTCTTTATGacctgTGGGAATATTACCTGCCCCGTCTTTATTCTGGAATCTCACTCTTTGGAGTTCTGCTGCTTTtgtTGTGCACACCCTTTGGGCTTTCACGTATGTTTAGCGTCACTGGGAGCTTATTGGTTAAACCTCGGctgttggAGAACCTAGAAGAAACGATGAACTGCACAGCATTTGAAGAGGCCTCTCTGTCCAGGAAGTTGAAAAGTAACACTTCCTGTTGGATCAGTGCAAACATGGAAGCCATCAACAATGAACTTTTGAGTGTACAATCCAGACGCATtgctttagAGTTGCGGAAAAGAGCATCTCCATGGCAACGCAACCTGGGATACCCAGTGGCCATGCTGCTGCTTTTAGCTTTAACTGCGGTGTCTGTGCTGATGGTGTGTTTCCATGTGCTCGAGCTGCTCTTTGATGAGTCTGCTATGCCTAGAGGAATGGAGGACCCTCACTTGGGCCTTGCCTCATTCTCAATGTTCGGTTCTCTGGGAGCTGCAGTGCAGGTGGTCATCATCTTGTATCTCATGGTCTCCTCTGTCGTTGGATTCTACAGCTCTCCACTTTTCACCGGTTTATTGCCACGTGCACAGGACACAACCCTCACACAGATAATAGGGAACTGTGTTTCTCTTTTAATACTCAGTTCAGCCTTGCCTGTTTTCTCCCGCACATTGGGAATCACAAGGTTTGATCTGCTTGGAGACTTTGGACGGTACAACTGGCTTGGCAGTTTCAACATTGTTTTCCTGTACAACATGCTTTTTGCTGGACTCACATCCGCCTGCCTCATCAACACAGTCACATGGGCTTTACAAAGAGAGCTCATCCGTGCCTTTGgTCTCCACAGACTGCCCCTGACTGTGTCTCGATCAACTATACCGCTCAAACTACTCCTAGCCAATGGGCTCTCAAAGATTCATTGAAGAGCGATTAAGCTTTTTGATATATCATTGGCTACTGAAGCCTTTTACCTTCTGGAGAAGGTTCTGGATCCCAATCTATGGCTTGCTCCTGTTGGACCAGAGCTATTCTGAGTCCATTTTAAGTGAACAATAGTCACCAAGGATGTTTACAAAGGTTGCCTAAACGATGTTGAACGATGGGACCTTCTAAGTGGGATTCTGCAACTGCGGTTTAATGCGTATTTTACTTCAGTAATATTTACACGTTTTACTGCCTTTAATAAAGGGATGTCAGATCACTGGACGCCTTGAACAAATGCCatatgaaaaatgaacaatGGCTGCAGAGGACTTTGACGTGCGTCCAGACAGGAGAGCTATTTCAGAGGATGACATCACAGCCATGACCGCGTTTCCTTTTCCTGGTGGTGGAATGACAGTGTTGAGTTCTGTCCTGGTGGGCCCCAGCGTTTTCCCCTTGTATATCACTATTTTTAGTGTCATCCAGTGAATTCTGTTCTGGGGGTCCTTATTGCACTGGCATTGGAAGTCCAGTCTGATGGGATTTGTCTGCTTCTAAATGAAGTGAAAGTCCTTGAGAAAAGGGATCAAAGGGTAACCAGTGACGGCGATCTTGGAGAGGATGTTCACTGTGAGAAAACAAATGGGGTTCTAGTttgtaaaatacactttttgtaTAGGTTAGGTTTTAAAACGTATGCATAACAATGGTGGCTGACAGTGATTTCAAGCTTTAGGCCAAGACGAGACAGCTGTGAATGTTCAGGGATTTTGTTCccttttttgttatatttaatatgtgaaTCTTTAACGTGCAATATTGTACTATGAAATGTCGACACAAtctaacatgatattcttcgaGAAGCTTGTGCTAACGACCAAAGGAGGGTGTTTACCCAATTAAGAACACCGGGATTGGGCAATAAGGTCAAAGTTCGGTTAGATATGTTTTGGATTGAGCTATGCAGAGGGACAATGAGCACACAGGAGCATTTCTTGTTTCACGGACACTAACTTGCTGTGATTTCATAAATGTGGACTTTTTGATTCGATAATCACTTGTTTTATATGGTGCAGTATTAAGGTGTACAAATTTGCTGATAActgttatttgttcttttttttatgattcagtTATTTATGACTTTGCTTTTGCGTAATTTTTAAACTAATGTTCTTCAAGCAGTGGCCAGTAGAGGACAGTGTGCCACAAATCCATCATTACAACATCGCTATCCTTCAGGTTCCTTCTTAACCATATTTCAACATGATACTTgtataaaacagattttctttttctttgagcATCGTTTACAGTTTTGTAGCTGTCCAACAATGAATGTGAatctagaaaacaaaaaaaaaagaaaattgtcatTTACTTACCttcacgttgttccaaacctgtatgactttgtttcttttgtggaacacaaagtAGGATATTTCGTGAACATTTAGGagaattttgaagaatgttgaaGACGTTCTTAAACCACATTGAAACCAACTGACAACAGAtatctttcaaaatattatcGTATAGGTTAAGTAATGacctaattttcatttttggatgactatccctttaagtgttttttctattctcacaaaatgcaatttttcatcttaaaaaaaactggattCATGAATTACAGGATCATATATGGATGTCTGTTTGACTTCTTTCAGGGAACAAAGAAAATACGACGagcattacatatatttttaaaaagaaattactgacgttttaattgtttgaaaaacTCCAGTTGCTtcctttttaatgcaaagtAAGCAAATGGGATGTAATCATTTCTTCTCATTCCCTTCGTAATGCTGAGAAAGGAACAATAAACTTGTTTACAACTGTTTTTCCAA
>XM_043225200.1
TTTGCTGGGTCcagaaagGGCATTATGGCGCGGGTCTATGAGACTGCTGTAATGTTGCTGCTGCTTAGTCTGCTGGTTTTGGGCATCGTTTGGGTGGCATCAGCCCTCATCCATCACAACACTGCCCGTGAGAGTCTTTATGacctgTGGGAATATTACCTGCCCCGTCTTTATTCTGGAATCTCACTCTTTGGAGTTCTGCTGCTTTtgtctgttggAGAACCTAGAAGAAACGATGAACTGCACAGCATTTGAAGAGGCCTCTCTGTCCAGGAAGTTGAAAAGTAACACTTCCTGTTGGATCAGTGCAAACATGGAAGCCATCAACAATGAACTTTTGAGTGTACAATCCAGACGCATtgctttagAGTTGCGGAAAAGAGCATCTCCATGGCAACGCAACCTGGGATACCCAGTGGCCATGCTGCTGCTTTTAGCTTTAACTGCGGTGTCTGTGCTGATGGTGTGTTTCCATGTGCTCGAGCTGCTCTTTGATGAGTCTGCTATGCCTAGAGGAATGGAGGACCCTCACTTGGGCCTTGCCTCATTCTCAATGTTCGGTTCTCTGGGAGCTGCAGTGCAGGTGGTCATCATCTTGTATCTCATGGTCTCCTCTGTCGTTGGATTCTACAGCTCTCCACTTTTCACCGGTTTATTGCCACGTGCACAGGACACAACCCTCACACAGATAATAGGGAACTGTGTTTCTCTTTTAATACTCAGTTCAGCCTTGCCTGTTTTCTCCCGCACATTGGGAATCACAAGGTTTGATCTGCTTGGAGACTTTGGACGGTACAACTGGCTTGGCAGTTTCAACATTGTTTTCCTGTACAACATGCTTTTTGCTGGACTCACATCCGCCTGCCTCATCAACACAGTCACATGGGCTTTACAAAGAGAGCTCATCCGTGCCTTTGgTCTCCACAGACTGCCCCTGACTGTGTCTCGATCAACTATACCGCTCAAACTACTCCTAGCCAATGGGCTCTCAAAGATTCATTGAAGAGCGATTAAGCTTTTTGATATATCATTGGCTACTGAAGCCTTTTACCTTCTGGAGAAGGTTCTGGATCCCAATCTATGGCTTGCTCCTGTTGGACCAGAGCTATTCTGAGTCCATTTTAAGTGAACAATAGTCACCAAGGATGTTTACAAAGGTTGCCTAAACGATGTTGAACGATGGGACCTTCTAAGTGGGATTCTGCAACTGCGGTTTAATGCGTATTTTACTTCAGTAATATTTACACGTTTTACTGCCTTTAATAAAGGGATGTCAGATCACTGGACGCCTTGAACAAATGCCatatgaaaaatgaacaatGGCTGCAGAGGACTTTGACGTGCGTCCAGACAGGAGAGCTATTTCAGAGGATGACATCACAGCCATGACCGCGTTTCCTTTTCCTGGTGGTGGAATGACAGTGTTGAGTTCTGTCCTGGTGGGCCCCAGCGTTTTCCCCTTGTATATCACTATTTTTAGTGTCATCCAGTGAATTCTGTTCTGGGGGTCCTTATTGCACTGGCATTGGAAGTCCAGTCTGATGGGATTTGTCTGCTTCTAAATGAAGTGAAAGTCCTTGAGAAAAGGGATCAAAGGGTAACCAGTGACGGCGATCTTGGAGAGGATGTTCACTGTGAGAAAACAAATGGGGTTCTAGTttgtaaaatacactttttgtaTAGGTTAGGTTTTAAAACGTATGCATAACAATGGTGGCTGACAGTGATTTCAAGCTTTAGGCCAAGACGAGACAGCTGTGAATGTTCAGGGATTTTGTTCccttttttgttatatttaatatgtgaaTCTTTAACGTGCAATATTGTACTATGAAATGTCGACACAAtctaacatgatattcttcgaGAAGCTTGTGCTAACGACCAAAGGAGGGTGTTTACCCAATTAAGAACACCGGGATTGGGCAATAAGGTCAAAGTTCGGTTAGATATGTTTTGGATTGAGCTATGCAGAGGGACAATGAGCACACAGGAGCATTTCTTGTTTCACGGACACTAACTTGCTGTGATTTCATAAATGTGGACTTTTTGATTCGATAATCACTTGTTTTATATGGTGCAGTATTAAGGTGTACAAATTTGCTGATAActgttatttgttcttttttttatgattcagtTATTTATGACTTTGCTTTTGCGTAATTTTTAAACTAATGTTCTTCAAGCAGTGGCCAGTAGAGGACAGTGTGCCACAAATCCATCATTACAACATCGCTATCCTTCAGGTTCCTTCTTAACCATATTTCAACATGATACTTgtataaaacagattttctttttctttgagcATCGTTTACAGTTTTGTAGCTGTCCAACAATGAATGTGAatctagaaaacaaaaaaaaaagaaaattgtcatTTACTTACCttcacgttgttccaaacctgtatgactttgtttcttttgtggaacacaaagtAGGATATTTCGTGAACATTTAGGagaattttgaagaatgttgaaGACGTTCTTAAACCACATTGAAACCAACTGACAACAGAtatctttcaaaatattatcGTATAGGTTAAGTAATGacctaattttcatttttggatgactatccctttaagtgttttttctattctcacaaaatgcaatttttcatcttaaaaaaaactggattCATGAATTACAGGATCATATATGGATGTCTGTTTGACTTCTTTCAGGGAACAAAGAAAATACGACGagcattacatatatttttaaaaagaaattactgacgttttaattgtttgaaaaacTCCAGTTGCTtcctttttaatgcaaagtAAGCAAATGGGATGTAATCATTTCTTCTCATTCCCTTCGTAATGCTGAGAAAGGAACAATAAACTTGTTTACAACTGTTTTTCCAA

Function

symbol description
lmbr1l Predicted to enable transmembrane signaling receptor activity. Predicted to be involved in negative regulation of canonical Wnt signaling pathway; receptor-mediated endocytosis; and signal transduction. Predicted to act upstream of or within Wnt signaling pathway and endocytosis. Predicted to be located in endoplasmic reticulum membrane and plasma membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including cardiovascular system; margin; mesoderm; presumptive diencephalon; and retina. Orthologous to human LMBR1L (limb development membrane protein 1 like).

NR:

description
PREDICTED: protein LMBR1L

GO:

id name namespace
GO:0006897 endocytosis biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K25215 LMBR1L; protein LMBR1L

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225199.1 True 3660 mRNA 0.42 16 16024223 16038514
XM_043225200.1 False 2887 mRNA 0.41 11 16033011 16038514

Neighbor

gene id symbol gene type direction distance location
rps26 rps26,RPS26,rps26l,LOC107563646 coding upstream 15489 16007616 ~ 16008734 (+)
wnt1 wnt1,LOC107563635,LOC107716204,LOC107695811,LOC107681946,LOC107745472,LOC107570486 coding upstream 23452 15994736 ~ 16000771 (+)
LOC122328928 LOC107716074,LOC107563642,LOC107695755,LOC107571700,LOC107687557,LOC107745480 coding upstream 156122 15862039 ~ 15868101 (+)
mipa mipa,LOC107745456,LOC107570312,LOC107668565,LOC107695819,LOC107716194,LOC107571785 coding upstream 288003 15733686 ~ 15736220 (+)
ptges3a ptges3a,ptges3,LOC107745455,LOC107570321,LOC107716195,LOC107695820,LOC107571786 coding upstream 295017 15724783 ~ 15729206 (+)
dhh dhh,LOC107708800,LOC107571723,LOC107716210,LOC107681955,LOC107563640,LOC107695806 coding downstream 4746 16043260 ~ 16048908 (+)
kmt2d kmt2d,LOC107681934,LOC107695802,LOC107716211 coding downstream 12051 16050565 ~ 16083002 (+)
arhgef25a arhgef25a,LOC107570569,LOC107708856,LOC107681953,LOC107716212,LOC107695729 coding downstream 91587 16130101 ~ 16188525 (+)
slc26a10 slc26a10,LOC107708797,LOC107681935,LOC107716215,LOC107586569,LOC107695728,LOC107570587 coding downstream 175442 16213956 ~ 16222046 (+)
c1galt1a c1galt1a,LOC107708852,LOC107571731,LOC107586568,LOC107695751,LOC107716090 coding downstream 197252 16235766 ~ 16240924 (+)
G158117 NA non-coding upstream 58459 15964752 ~ 15965764 (+)
G158115 NA non-coding upstream 74802 15896647 ~ 15949421 (+)
G158113 NA non-coding upstream 86352 15934939 ~ 15937871 (+)
G158110 NA non-coding upstream 142331 15880663 ~ 15881892 (+)
G158074 scn8aa,LOC107695818,LOC107563626 non-coding upstream 196290 15818461 ~ 15827933 (+)
G158423 NA non-coding downstream 501022 16539536 ~ 16539832 (+)
LOC122328367 NA non-coding downstream 507327 16545841 ~ 16573057 (+)
G158430 LOC107660256 non-coding downstream 510725 16549239 ~ 16549606 (+)
G158434 NA non-coding downstream 516903 16555417 ~ 16555642 (+)
G158437 NA non-coding downstream 570311 16608825 ~ 16611041 (+)
G158162 dnajc22,LOC107708801,LOC107716089,LOC107563648,LOC107571715,LOC107695753 other upstream 829 16022199 ~ 16023394 (+)
G157620 NA other upstream 719673 15300704 ~ 15304550 (+)
G157656 megf11,LOC107583869,LOC107672222,LOC107596974,LOC107686294 other upstream 1028078 14992350 ~ 14996145 (+)
LOC122328907 mef2d,LOC107741762,LOC107549240,LOC107717782,LOC107597970,LOC107663114,LOC107689865 other upstream 1266006 14725910 ~ 14758217 (+)
LOC122328914 szrd1,LOC107673108,LOC107716129,LOC107737539,LOC107687433,LOC105899027 other upstream 1309668 14712147 ~ 14714555 (+)
LOC122328571 kmt2d,LOC107681934,LOC107716211,LOC107695802,LOC107563643 other downstream 543456 16581970 ~ 16607408 (+)
G158446 atf7a,LOC107563644,LOC107570410,LOC107745462,LOC107681998 other downstream 582684 16621198 ~ 16664314 (+)
LOC122328551 atf7b,atf7a,LOC107711055,LOC107585125,LOC107740570,LOC107667392,LOC107673513,LOC107582698,LOC107681998,LOC107716199,LOC107745462,LOC107570410,LOC107563644,LOC107695816 other downstream 596932 16635446 ~ 16669648 (+)
G158486 NA other downstream 692832 16731346 ~ 16732884 (+)
G158524 NA other downstream 1043691 17082205 ~ 17082655 (+)

Expression


Co-expression Network