sac3d1 (LOC107663057,LOC107593949,LOC107724183,LOC107696954,LOC107551515,LOC107705659,LOC107705658)


Basic Information

Item Value
gene id sac3d1
gene name LOC107663057,LOC107593949,LOC107724183,LOC107696954,LOC107551515,LOC107705659,LOC107705658
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 5869126 ~ 5872179 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225202.1
TAGCGCTCGTCGGATATGACGTACATTTGCGTGAAACCCGGCGCCCAATCAGAGCCGTCTTTACGGGAAGTGTTTTTAGAGTTGAGCTCGACCCGACCAATGAACAGAACAGACATGAGCGTCGGGTGGCATCAGTCTAGGAGAGGCCGAGGGCACAGGCATAAGGAGCAGGGTCGAGCGAGCAGGGCTCGTGTGGTGGAGCAGAAAGCTGAAGACCCAGTGCCTCACGGGACCTGTATGACTATGTGTCCTGCCCATGAGATATGCCAGCGGGAAGCACAGAATCGGCTGCACAGGTTTGAGACGGCGGCCGGCACGGAGCGGGACCGGTTGCCACGCGCTGACGTCTCACGAGCCGTCAAAGAGTATTCGAGACCCGCGGCGGGAAAAGACTCCACGAGGGCCAGCGACCTTCGACCTCCGTCTGTGCTTTTAAAGACCGCGCGTTACCTGGTCGACGACGTTGCGGCTTCCTCCTCCTTTCAGCCGTGGACGGAGGTGTACGCTTTCGTGTTTGACCGTCTGCGCAGCGTTCGACAGGACATGATTATCCAGCGCGTGTCTGGGCCGGACTGTGTGGCCGTGCTGGAGAAAAGCGTGCGCTTCCTTCTCTACGCCTCCTACAGACTCTGCGGCCAGCAGCTTCAGCATTTTGACCCACGCATCAATGACACTCACCTGCAGGAGTGCTTGAGCTGGTTGCTGGAGAGCTACAGAGACGGAAAGCACCAGCATCAAGAGGAGTTTCAGGCATTGAGTCTTCTCTATAACTTGAGTTCATCTCAAGCCATTCAGCACGTCCTGGAGCTGCCCGAGAGGATACGCAGCTCTCCGAGTGTTCAGCTGGCTCTGGCCTTGAGCAGAGCACATACGGAGCGCAACCCGGTTCGGCTGCTGCGTCTGGCCCAGAGACTGGACTTCATCCAGGTGTGTGCCGTCCACCGACACCTGCTGCCCTGCAGAAGAGACCTGCTCCTGCTCTACAGCCACGGACTCAGCAGCCGCAACTGCCGCTACCCGCTCCAGAGCCTGGCGCGCCTCCTCGATCTCAAAGACGCTCTAGCTGAGCAGCTGTGCCAGGTGTGCGGCGTACACGTCAGCGGAGAGTGGGTGACCTTCTCTAAGAGCTCCTTCAGGGACGCCCCGTCTGGAGATCTGCAGTGCAGACGTCTGCATGAGCCGCCGGATGACGAGCGCTGGAACTGCTCTCCTGGCAGCGTCATTCAGGGCTGTGACTGAAACACGCTTTTTTTATCTTCTGGGTCATGCCatgtttggatttgttttataGTAAATGTTTAAACGACCTGCATTTTCAATAAAGCTTTCATAATTTACACAAACCTGGCAAACTCAGGGTTTTTCGGTGGACTTGatgaaatgtgaatttttatagGTAGTCGTTTAATAACAAAGTGCTAAGTAAAGTAATAAACTGTTTTTAGTTTCTACTTTATCCATATAATCAACGATTTATTGATCTTTAATATTGCAACtaaatatttcttacatttattttaatacagattttaaaCGATAAAGTCTTGAATTAcctaaatgggttttttttgttcatttttttgcaatgcaattGCAAGTTTGCAGGTTGGAATTGCTTGATTTCTTTAATACTTCTTTATTTCCCTTTGAATAGTAGTATCTGTTCAGCTTTTGGGGAAATTTTGcacaatgtattattttacatttatgcacaaTTCTTGTTTGTGCATGTATTGATGTATTTCAAGCATAATAGTTATAcattatatagcgcttttatacattatatgatGTACAGTTGCAGTAAAAAACCAATCGGAGCTGTCTTCGCTTCAAATCTAAGCAGCTGAGTAACATGTGAAACTTCcaaaagcttgttttatttcagttaatgtattGTGAGGTAATGTATTGTAGACAGCTGGAATAAAGAGACATGAGGGAGACGCATA

Function

NR:

description
HAUS augmin-like complex subunit 8 isoform X5

GO: NA

KEGG:

id description
K16734 SAC3D1, SHD1; SAC3 domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225202.1 True 1952 mRNA 0.49 4 5869126 5872179

Neighbor

gene id symbol gene type direction distance location
LOC122328332 mrgbp,LOC107705719,LOC107724191,LOC107696984,LOC107693561 coding downstream 3909 5859911 ~ 5865217 (-)
LOC122329222 eef1a2,LOC107724190,LOC107696983,LOC107551525,LOC107705720,LOC107693560,LOC108429306,LOC108276238 coding downstream 10379 5853109 ~ 5858747 (-)
LOC122329283 LOC107696925,LOC107724187,LOC107551517,LOC107594764,LOC107724182 coding downstream 44879 5817641 ~ 5824247 (-)
LOC122329292 LOC107696963,LOC107559168,LOC107746530,LOC107707374,LOC107673558,LOC107598155 coding downstream 142863 5722488 ~ 5726263 (-)
LOC122329296 LOC107673498,LOC107746338,LOC107709218,LOC107554217,LOC107696970 coding downstream 355738 5509695 ~ 5513388 (-)
haus8 haus8,LOC107551529,LOC107696953,LOC107663059,LOC107577736 coding upstream 115 5872294 ~ 5876865 (-)
pigt LOC107724198,LOC107551531,LOC107696980,LOC107705717,LOC107593938,LOC107663065 coding upstream 14433 5886612 ~ 5893723 (-)
sycp2 LOC107696925 coding upstream 47594 5919773 ~ 5936063 (-)
ppp1r3da ppp1r3da,LOC107722761,LOC107696952,LOC107593910,LOC107551518,LOC107663071 coding upstream 65453 5937632 ~ 5939803 (-)
ttll9 ttll9 coding upstream 72502 5944681 ~ 5949953 (-)
LOC122329299 NA non-coding downstream 206170 5654018 ~ 5662956 (-)
G155238 NA non-coding downstream 321418 5525041 ~ 5547708 (-)
LOC122329300 NA non-coding downstream 437602 5430546 ~ 5431524 (-)
G155157 NA non-coding downstream 756162 5111844 ~ 5112964 (-)
G155156 NA non-coding downstream 771996 5096532 ~ 5097130 (-)
G155308 NA non-coding upstream 318918 6191097 ~ 6191320 (-)
G155388 NA non-coding upstream 476828 6349007 ~ 6351825 (-)
G155413 NA non-coding upstream 612475 6484654 ~ 6484915 (-)
G155391 krt8,LOC107551542,LOC108411779,LOC107727027,LOC105023875,LOC107681390,LOC107568038,LOC107705700 non-coding upstream 613260 6485439 ~ 6499749 (-)
G155392 LOC107559866,LOC107705699,LOC107666380,LOC108429286 non-coding upstream 637536 6509715 ~ 6514093 (-)
LOC122329188 LOC107709248,LOC107687290,LOC107558915,LOC107671882,LOC107572785,LOC107723742,LOC107701749,LOC107549048,LOC107756350 other downstream 372652 5484212 ~ 5496474 (-)
LOC122329286 nav1b,LOC107666060,LOC107595432,LOC107740254,LOC107696445,LOC107587625 other downstream 389304 5477841 ~ 5479822 (-)
G155227 si:zfos-452g4.1,LOC107724183,LOC107663057,LOC107696954,LOC107551515,LOC107705659,LOC107593949 other downstream 414079 5454417 ~ 5455047 (-)
LOC122329181 LOC107601337,LOC107697001,LOC107723119 other downstream 1034606 4827478 ~ 4834520 (-)
LOC122329268 LOC107707377,LOC107673205,LOC107746501,LOC107697018,LOC107601321,LOC107598138,LOC108443130,LOC103026736,LOC106572423 other downstream 1674128 4173914 ~ 4194998 (-)
G155489 LOC107681366,LOC107727023,LOC107705691 other upstream 858672 6730851 ~ 6731886 (-)
rps21 rps21,LOC107666483,LOC107681394,LOC106572905 other upstream 894429 6766608 ~ 6823032 (-)
ccm2l ccm2l,LOC107666505,LOC107551511 other upstream 985828 6858007 ~ 6867300 (-)
LOC122328436 cables2b,LOC107681405,LOC107705686,LOC107551510,LOC107559848,LOC107726996,LOC107666605 other upstream 1092563 6964742 ~ 6981961 (-)
LOC122329304 ccm2l,LOC107666505,LOC107551511 other upstream 1121988 6994167 ~ 7003523 (-)

Expression


Co-expression Network