chchd6a (chchd6a,LOC107715026,LOC107671869,LOC107593996,LOC107697961,LOC107707034,LOC107598676)


Basic Information

Item Value
gene id chchd6a
gene name chchd6a,LOC107715026,LOC107671869,LOC107593996,LOC107697961,LOC107707034,LOC107598676
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 17461262 ~ 17518098 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225214.1
TCTATTGGCGTATTGCACTGTCGTTGGCCAATGATGTTTCAGGATACTGCCCCTTACAAACGGTCACTTCCCAAAGaTCTATTAACGGAGCTTCAGAAAAAAGCGATGGGGTCCGGAGAAAGCACGACAAGGAGAGTTTCTTTCGGCCTAGATGAGGATGACAGGGTGAGGATTCTGCGTGGAGTGAAGCTGTCTGAAGACGTGCTACAGCGCATGAGGAATGAAAGTGCTGATCCAAGACCACCTGTCAACAATAAAGAGAACTTAGGCCAGCAGACTCGAACATCCAGCACATCTGACCCACAGTCTCCAAAAACACAGGCCAGGACAACTTTTCCTGACTCTAAAGAGGAGCTAAGGAAGAGGTATGAGCAGCAGCAGGCCATTATACAGGAGGAGTTGGCTCGTATCGCAcgcaaagagagagaggcagccCGACAGGACATCACTCGAGCGGTGCAGAGAGAGCGAGTACAGACACGGCAGGAGTCTGAGAAAGCCAAACAGCTGCCTGCCTCCGAACTGGATGCCTGGGGGAAACAGCTGGATAAGAAGGAGGCAGAGCTAAAGGCGCTAGAGGCTTTCTACAAGGAACAGATCACACAACTAGAGAAGAAGaatgAGGAACGCTTCAAAATGTCCGCTGAACAGTTCCACACCGCTGCAACCAGGAGCGAAGCCAATATAAAGCCACGTAATGTGGAGCCGGTGTGTTCGAACCTGCAAGCTCAGATCCTGAACTGCTATAGAGAGAACCGTGAGCAGACGCTTCAGTGCTCAGATCTGGCCAAAGAGTACATGCAATGCATCAATGCAGCTAAGAAGAATCTGTTGGTGAATCACGGATAGAGAGCAGCTCATCTGTGTGTTGGGTTTCACGGGCCGCTTCATCTTTAGCCTCTCCATCCAATTACATCTGATTCCAGGACTCCGAGTCGCACTCCAGTGTACTGAACAAGCTTCATATTACAGGCCACTATGAGTATTTCATTATCTGTAACAGTGCTGAGAATGGGATCATAGACATGCAAGGCTTGGTTTTTATAAGAGTACACTCAGGAAATCCTGATACTTTTATTTGTCGGGATTTTATTTATGGATTGTATTTTGTCAAAAGCATATCTACATAAATGGATAACTGTCCAAAGCTG
>XM_043225215.1
TCTATTGGCGTATTGCACTGTCGTTGGCCAATGATGTTTCAGGATACTGCCCCTTACAAACGGTCACTTCCCAAAGaTCTATTAACGGAGCTTCAGAAAAAAGCGATGGGGTCCGGAGAAAGCACGACAAGGAGAGTTTCTTTCGGCCTAGATGAGGATGACAGGGTGAGGATTCTGCGTGGAGTGAAGCTGTCTGAAGACGTGCTACAGCGCATGAGGAATGAAAGTGCTGATCCAAGACCACCTGTCAACAATAAAGAGAACTTAGGCCAGCAGACTCGAACATCCAGCACATCTGACCCACAGTCTCCAAAAACACAGGCCAGGACAACTTTTCCTGACTCTAAAGAGGAGCTAAGGAAGAGGTATGAGCAGCAGCAGGCCATTATACAGGAGGAGTTGGCTCGTATCGCAcgcaaagagagagaggcagccCGACAGGACATCACTCGAGCGGTGCAGAGAGAGCGAGTACAGACACGGCAGGAGTCTGAGAAAGCCAAACAGCTGGGGAAACAGCTGGATAAGAAGGAGGCAGAGCTAAAGGCGCTAGAGGCTTTCTACAAGGAACAGATCACACAACTAGAGAAGAAGaatgAGGAACGCTTCAAAATGTCCGCTGAACAGTTCCACACCGCTGCAACCAGGAGCGAAGCCAATATAAAGCCACGTAATGTGGAGCCGGTGTGTTCGAACCTGCAAGCTCAGATCCTGAACTGCTATAGAGAGAACCGTGAGCAGACGCTTCAGTGCTCAGATCTGGCCAAAGAGTACATGCAATGCATCAATGCAGCTAAGAAGAATCTGTTGGTGAATCACGGATAGAGAGCAGCTCATCTGTGTGTTGGGTTTCACGGGCCGCTTCATCTTTAGCCTCTCCATCCAATTACATCTGATTCCAGGACTCCGAGTCGCACTCCAGTGTACTGAACAAGCTTCATATTACAGGCCACTATGAGTATTTCATTATCTGTAACAGTGCTGAGAATGGGATCATAGACATGCAAGGCTTGGTTTTTATAAGAGTACACTCAGGAAATCCTGATACTTTTATTTGTCGGGATTTTATTTATGGATTGTATTTTGTCAAAAGCATATCTACATAAATGGATAACTGTCCAAAGCTG

Function

symbol description
chchd6a Predicted to be involved in cellular response to DNA damage stimulus and cristae formation. Predicted to be located in mitochondrial inner membrane. Predicted to be part of MICOS complex. Orthologous to human CHCHD6 (coiled-coil-helix-coiled-coil-helix domain containing 6).

NR:

description
MICOS complex subunit mic25a-like isoform X1

GO:

id name namespace
GO:0042407 cristae formation biological_process
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0005743 mitochondrial inner membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225214.1 True 1151 mRNA 0.48 10 17461262 17518098
XM_043225215.1 False 1127 mRNA 0.47 9 17461262 17518098

Neighbor

gene id symbol gene type direction distance location
sars1 sars,LOC107697960,LOC107671868 coding upstream 792 17454455 ~ 17460470 (+)
si:ch211-207e14.4 LOC107707035,LOC107697962,LOC107598648,LOC107671899,LOC107594033 coding upstream 9165 17444522 ~ 17452097 (+)
fam50a fam50a,LOC107707036,LOC107598596,LOC107671832,LOC107697964,LOC107715033 coding upstream 17135 17438517 ~ 17444127 (+)
LOC122328977 LOC107671833,LOC107715029,LOC107598604,LOC107707038,LOC107697965,LOC107593998 coding upstream 28549 17428457 ~ 17432713 (+)
cs cs,LOC107707042,LOC107715034,LOC107671863,LOC107697968 coding upstream 44607 17405458 ~ 17416655 (+)
LOC122329281 LOC107594031,LOC107715025,LOC107671876,LOC107599375,LOC108425505,LOC106572368 coding downstream 47080 17565178 ~ 17715464 (+)
zmp:0000001088 zmp:0000001088,LOC107664158,LOC107714946,LOC107599709,LOC107563126 coding downstream 278820 17796918 ~ 17803981 (+)
mul1b mul1,mul1b,LOC107714948,LOC107563145,LOC107599695,LOC107706958 coding downstream 329551 17847649 ~ 17850747 (+)
ddx19a zgc:193690,LOC107664213,LOC107563149,LOC107706984,LOC107697911,LOC107599485,LOC108433381 coding downstream 398122 17916220 ~ 17922367 (+)
ints11 cpsf3l,LOC107697912 coding downstream 408751 17926849 ~ 17935347 (+)
G158573 NA non-coding upstream 38962 17420722 ~ 17422300 (+)
G158579 NA non-coding upstream 40619 17420026 ~ 17420643 (+)
G158569 NA non-coding upstream 56222 17358364 ~ 17405040 (+)
G158550 NA non-coding upstream 150470 17308713 ~ 17310792 (+)
G158543 csrnp2,LOC107671888,LOC107598537,LOC107715040,LOC107594006,LOC107756414 non-coding upstream 164804 17294071 ~ 17296458 (+)
G158726 NA non-coding downstream 292487 17810585 ~ 17810812 (+)
G158754 LOC107714950,LOC107664163,LOC107706981,LOC107563148,LOC107697872,LOC107599688 non-coding downstream 404472 17922570 ~ 17923679 (+)
G158775 NA non-coding downstream 426835 17944933 ~ 17945141 (+)
G158810 LOC107714990,LOC107593956,LOC107664165 non-coding downstream 647498 18165596 ~ 18173699 (+)
G158817 NA non-coding downstream 684078 18202176 ~ 18202492 (+)
snrpg snrpg,LOC107671841,LOC107594056,LOC107598637,LOC107706979 other upstream 33231 17426733 ~ 17428031 (+)
si:ch211-148l7.4 LOC107715028,LOC107671835,LOC107593999,LOC107697967,LOC107706980 other upstream 34629 17423120 ~ 17426633 (+)
G158523 NA other upstream 289423 17105498 ~ 17171839 (+)
G158524 NA other upstream 378607 17082205 ~ 17082655 (+)
G158486 NA other upstream 728378 16731346 ~ 16732884 (+)
camk2n1b camk2n1b,LOC107664141,LOC107714949,LOC107706982,LOC107563146,LOC107599136 other downstream 292971 17811069 ~ 17856534 (+)
G158789 march9,LOC107664138,LOC107593952,LOC107697857,LOC107714987,LOC107706970,LOC107599679,LOC105912704 other downstream 539016 18057114 ~ 18058917 (+)
fam110c LOC107714930,LOC107664105,LOC107593987 other downstream 1123396 18641494 ~ 18644692 (+)
G159081 NA other downstream 1253852 18771950 ~ 18789618 (+)
LOC122328754 LOC107715022,LOC107593991,LOC107697954,LOC107664193,LOC564564,LOC107598698,LOC107707027,LOC108432721 other downstream 1281474 18799572 ~ 18814653 (+)

Expression


Co-expression Network