mipa (mipa,LOC107745456,LOC107570312,LOC107668565,LOC107695819,LOC107716194,LOC107571785)


Basic Information

Item Value
gene id mipa
gene name mipa,LOC107745456,LOC107570312,LOC107668565,LOC107695819,LOC107716194,LOC107571785
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 15733686 ~ 15736220 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225227.1
TTCACATCCCTCCATTTTTTGGCATCGCCTCCGAGTTATCGCAGCCATGTGGGAGTTCCGGTCCATGTCTTTTTGGCGGGCTGTGTTTGCCGAGTTCTATGGCACCatgttctttgtgttttttgggcTGGGATCAGCCCTGCGTTGGACCACCGGACCACACAACGTGCTCCAAGTCGCTTTCTGCTTCGGTCTGGCAGCTGCCACTCTCATCCAGTCCATCGGTCACATCAGCGGTGGCCACATCAACCCGGCTGTCACGTTCGCCTACCTGATAGGCTCCCAGATGTCCCTGTTTCGTGCATTCTTCTACATCTGTGCTCAGTGCTTGGGAGCTCTAGCTGGAGCCGCTGTGCTGTATGGAGTCACGCCAAGCAATATGAGAGGCAATCTTGGCCTGAACACGCTTCAGCCTGGCATCAGTCTGGGAATGGCCACCACTATAGAGGTATTCCTGACTCTGCAGCTCGTGGTTGTGGTCTTTGCTGTGACGGATGAGAGGAGAAATGGACGTCTGGGGTCTGCCGCTTTGTCCATTGGCTTCTCAGTGCTTGTGGGCCACCTGCTGGGGATGTATTACACTGGAGCTGGAATGAACCCTGCCAGGTCTTTTGCCCCTGCTGTGCTTTTTAGGAACTTTATTAACCACTGGGTGTACTGGGTGGGCCCTATGATCGGCAGTGCAATGGGTGCTCTGCTCTACGACTTCATGCTCTTTCCCCGGATGCGCGGCCTCTCCGAGCGACTGGCTGTGCTCAAGGGCAACCGACGTCCCGAGGCCGAAGCCCAGCAGGAGACCCGAGGGGACCCGATTGAGCTCAAAACACAAGCCTTATAAACACTACCAGGAAACTTTGGATCCCTGACGCGACACATACATACGTACGATCATTTCTCACACCTCATCCTCACACACCTCTTACATACCAACCGAGTTTGCTGTAGGAAGAATCACAAACACACTTCCAAAGGCAATAGAGACACTAAAACCCCTTCCCAAGGACTATGAATGAGGGTAAGAAGAGGACTTCCTGTTGAGGACTGCGCTCTGTACCGCCAGGTATAGGGAGCGAGATCAGGTGGCTAACGCCGCTCAGGGGCACCTCTGTCATTTCTAGTCTACTAAGAGTGAAATACACTAGAAGTGGACTTCTGCATGCTTTCCAGTTTCACAGGGTTTAAATCTCacac

Function

symbol description
mipa Enables water channel activity. Acts upstream of or within lens fiber cell morphogenesis and water transport. Predicted to be located in membrane. Predicted to be active in plasma membrane. Predicted to be integral component of membrane. Is expressed in eye; lens; lens fiber cell; and solid lens vesicle. Human ortholog(s) of this gene implicated in cataract and cataract 15 multiple types. Orthologous to human MIP (major intrinsic protein of lens fiber).

NR:

description
PREDICTED: lens fiber major intrinsic protein-like

GO:

id name namespace
GO:0002088 lens development in camera-type eye biological_process
GO:0055085 transmembrane transport biological_process
GO:0006833 water transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015250 water channel activity molecular_function

KEGG:

id description
K09863 AQP0, MIP; aquaporin-0

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225227.1 True 1191 mRNA 0.53 4 15733686 15736220

Neighbor

gene id symbol gene type direction distance location
ptges3a ptges3a,ptges3,LOC107745455,LOC107570321,LOC107716195,LOC107695820,LOC107571786 coding upstream 4480 15724783 ~ 15729206 (+)
rnd1b rnd1b,rnd1,LOC107745453,LOC107716191,LOC107668562,LOC103037018,LOC108275505,LOC103358261 coding upstream 31443 15691510 ~ 15702243 (+)
cacnb3b cacnb3b,LOC107695823,LOC107570227,LOC107668566,LOC104967530 coding upstream 48638 15673052 ~ 15685048 (+)
zgc:158263 zgc:158263,LOC107716164,LOC107695826,LOC107568456,LOC107668552 coding upstream 125233 15600652 ~ 15608453 (+)
si:ch73-206d17.1 LOC107726152,LOC107571682,LOC107695830,LOC107568454 coding upstream 255075 15475723 ~ 15478611 (+)
LOC122328928 LOC107716074,LOC107563642,LOC107695755,LOC107571700,LOC107687557,LOC107745480 coding downstream 125819 15862039 ~ 15868101 (+)
wnt1 wnt1,LOC107563635,LOC107716204,LOC107695811,LOC107681946,LOC107745472,LOC107570486 coding downstream 258516 15994736 ~ 16000771 (+)
rps26 rps26,RPS26,rps26l,LOC107563646 coding downstream 271396 16007616 ~ 16008734 (+)
lmbr1l lmbr1l,LOC107708860,LOC107681941,LOC107716206,LOC107695807 coding downstream 288003 16024223 ~ 16038514 (+)
dhh dhh,LOC107708800,LOC107571723,LOC107716210,LOC107681955,LOC107563640,LOC107695806 coding downstream 307040 16043260 ~ 16048908 (+)
G158061 NA non-coding upstream 13680 15717790 ~ 15720006 (+)
G158030 galnt6,LOC107695825,LOC107568460,LOC107745475,LOC107570209,LOC107668563 non-coding upstream 117888 15611607 ~ 15615798 (+)
G157728 LOC107745451,LOC107716070 non-coding upstream 189758 15540793 ~ 15543928 (+)
G157705 NA non-coding upstream 246706 15482672 ~ 15486980 (+)
G157704 LOC107570193,LOC107668567,LOC107695831,LOC107568457 non-coding upstream 251224 15479043 ~ 15482462 (+)
G158056 LOC107695735,LOC107745457,LOC107571782,LOC107668551,LOC107570234 non-coding downstream 4416 15740636 ~ 15741661 (+)
G158068 NA non-coding downstream 8897 15745117 ~ 15746289 (+)
G158074 scn8aa,LOC107695818,LOC107563626 non-coding downstream 82241 15818461 ~ 15827933 (+)
G158110 NA non-coding downstream 144443 15880663 ~ 15881892 (+)
G158115 NA non-coding downstream 160427 15896647 ~ 15949421 (+)
G157620 NA other upstream 429136 15300704 ~ 15304550 (+)
G157656 megf11,LOC107583869,LOC107672222,LOC107596974,LOC107686294 other upstream 737541 14992350 ~ 14996145 (+)
LOC122328907 mef2d,LOC107741762,LOC107549240,LOC107717782,LOC107597970,LOC107663114,LOC107689865 other upstream 975469 14725910 ~ 14758217 (+)
LOC122328914 szrd1,LOC107673108,LOC107716129,LOC107737539,LOC107687433,LOC105899027 other upstream 1019131 14712147 ~ 14714555 (+)
LOC122328906 LOC107673074,LOC107737500,LOC107695835,LOC107716175,LOC107574686,LOC107564653,LOC107576192 other upstream 1047068 14680860 ~ 14686618 (+)
G158152 rps26,RPS26,rps26l,LOC107563646 other downstream 247450 15983670 ~ 16083529 (+)
G158162 dnajc22,LOC107708801,LOC107716089,LOC107563648,LOC107571715,LOC107695753 other downstream 285979 16022199 ~ 16023394 (+)
LOC122328571 kmt2d,LOC107681934,LOC107716211,LOC107695802,LOC107563643 other downstream 845750 16581970 ~ 16607408 (+)
G158446 atf7a,LOC107563644,LOC107570410,LOC107745462,LOC107681998 other downstream 884978 16621198 ~ 16664314 (+)
LOC122328551 atf7b,atf7a,LOC107711055,LOC107585125,LOC107740570,LOC107667392,LOC107673513,LOC107582698,LOC107681998,LOC107716199,LOC107745462,LOC107570410,LOC107563644,LOC107695816 other downstream 899226 16635446 ~ 16669648 (+)

Expression


Co-expression Network