tmem107l (tmem107l,tmem107,LOC107571795,LOC107695749,LOC108433473,LOC107708779)


Basic Information

Item Value
gene id tmem107l
gene name tmem107l,tmem107,LOC107571795,LOC107695749,LOC108433473,LOC107708779
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 16399805 ~ 16401705 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225228.1
AAGAAGAGTGTTGTCGTAGCAACCCGAAGCTTAACGTTACAGCGAAAAGCTGTCCACGGGTTTTGTAGATAAGTATGAACGTTGCCTAAAAGcgttttatttgtgttctgcTTTAACCCCTGTTGGAAACAAACTTACTGTCTGCACGCCAACTGAACTATATTCGCAATCTTTAACACATTTTAGAGAGTTGGTACGTGCATCCGCGGTTAATGTCACACCTTTTGCGTAAACCGCTGAGTGCTATGCTCGTTTTCAAAGTGCgatgttgttttctgtttagttCAATGTCGGTGGTAAGCAGTCTGGTACCAGCCCGTTTCCTGACTCTCATCGCTCACCTCGTGATAGTCATCATCATATTCTGGTCGCGGGAGAGCAGTGTCAGAGCCTGCCTACCACTGGATTACACCGATGAAGAATACAGGTTAGAGGACACACGCCTCATAGTGGCTTTATCTGTGACCCTGGGCCTGTTGGCTGTCGAGCTGGTTGGGTTCCTCTGTGGTGTCTCCATGTTCAACAACAATCAAGCTCTTCTATCTACAGGATGTCACGCCAGTGGCTCTGTGGCTTTGCTCTTCTTCATGTTTGAGCAATGGACCTGCAGCATCTACTGGTGGATCTTTGGCTTCTGTAGTGTGATTCCAGCACTATATGAGATGATCCTTTTTGTTGTAGTGTTTGGATTTAAGAGGAAACCTCTATGAGGATCTCTGCCCTCTCTATTGTCCTTTCATGACTGACGTACCAGAATATCCTGAAACCAGAATAATACTCACTGGCACTATAAATAAGTGTTTTCCATGAGTTCTTAGAAAGCTAAATTATGTTTGAAAGCTTTCGGATGGTTTCAACCTGTTGACTAATTTACTTCTTGAAATCATTGCATTTTGTACACATTTAGATGAATTAAAGCATCTTGTATTTTGCTACAAA
>XM_043225229.1
AAGAAGAGTGTTGTCGTAGCAACCCGAAGCTTAACGTTACAGCGAAAAGCTGTCCACGGGTTTTGTAGATAAGTATGAACGTTGCCTAAAAGcgttttatttgtgttctgcTTTAACCCCTGTTGGAAACAAACTTACTGTCTGCACGCCAACTGAACTATATTCGCAATCTTTAACACATTTTAGAGAGTTGGTACGTGCATCCGCGGTTAATGTCACACCTTTTGCGTAAACCGCTGAGTGCTATGCTCGTTTTCAAAGTGCgatgttgttttctgtttagttCAATGTCGGTGGTAAGCAGTCTGGTACCAGCCCGTTTCCTGACTCTCATCGCTCACCTCGTGATAGTCATCATCATATTCTGGTCGCGGGAGAGCAGTGTCAGAGCCTGCCTACCACTGGATTACACCGATGAAGAATACAGCCTCATAGTGGCTTTATCTGTGACCCTGGGCCTGTTGGCTGTCGAGCTGGTTGGGTTCCTCTGTGGTGTCTCCATGTTCAACAACAATCAAGCTCTTCTATCTACAGGATGTCACGCCAGTGGCTCTGTGGCTTTGCTCTTCTTCATGTTTGAGCAATGGACCTGCAGCATCTACTGGTGGATCTTTGGCTTCTGTAGTGTGATTCCAGCACTATATGAGATGATCCTTTTTGTTGTAGTGTTTGGATTTAAGAGGAAACCTCTATGAGGATCTCTGCCCTCTCTATTGTCCTTTCATGACTGACGTACCAGAATATCCTGAAACCAGAATAATACTCACTGGCACTATAAATAAGTGTTTTCCATGAGTTCTTAGAAAGCTAAATTATGTTTGAAAGCTTTCGGATGGTTTCAACCTGTTGACTAATTTACTTCTTGAAATCATTGCATTTTGTACACATTTAGATGAATTAAAGCATCTTGTATTTTGCTACAAA
>XM_043225230.1
AAGAAGAGTGTTGTCGTAGCAACCCGAAGCTTAACGTTACAGCGAAAAGCTGTCCACGGGTTTTGTAGATAAGTATGAACGTTGCCTAAAAGcgttttatttgtgttctgcTTTAACCCCTGTTGGAAACAAACTTACTGTCTGCACGCCAACTGAACTATATTCGCAATCTTTAACACATTTTAGAGAGTTGttCAATGTCGGTGGTAAGCAGTCTGGTACCAGCCCGTTTCCTGACTCTCATCGCTCACCTCGTGATAGTCATCATCATATTCTGGTCGCGGGAGAGCAGTGTCAGAGCCTGCCTACCACTGGATTACACCGATGAAGAATACAGGTTAGAGGACACACGCCTCATAGTGGCTTTATCTGTGACCCTGGGCCTGTTGGCTGTCGAGCTGGTTGGGTTCCTCTGTGGTGTCTCCATGTTCAACAACAATCAAGCTCTTCTATCTACAGGATGTCACGCCAGTGGCTCTGTGGCTTTGCTCTTCTTCATGTTTGAGCAATGGACCTGCAGCATCTACTGGTGGATCTTTGGCTTCTGTAGTGTGATTCCAGCACTATATGAGATGATCCTTTTTGTTGTAGTGTTTGGATTTAAGAGGAAACCTCTATGAGGATCTCTGCCCTCTCTATTGTCCTTTCATGACTGACGTACCAGAATATCCTGAAACCAGAATAATACTCACTGGCACTATAAATAAGTGTTTTCCATGAGTTCTTAGAAAGCTAAATTATGTTTGAAAGCTTTCGGATGGTTTCAACCTGTTGACTAATTTACTTCTTGAAATCATTGCATTTTGTACACATTTAGATGAATTAAAGCATCTTGTATTTTGCTACAAA
>XM_043225231.1
TGTTGTCGTAGCAACCCGAAGCTTAACGTTACAGCGAAAAGCTGTCCACGGGTTTTGTAGATAAttCAATGTCGGTGGTAAGCAGTCTGGTACCAGCCCGTTTCCTGACTCTCATCGCTCACCTCGTGATAGTCATCATCATATTCTGGTCGCGGGAGAGCAGTGTCAGAGCCTGCCTACCACTGGATTACACCGATGAAGAATACAGGTTAGAGGACACACGCCTCATAGTGGCTTTATCTGTGACCCTGGGCCTGTTGGCTGTCGAGCTGGTTGGGTTCCTCTGTGGTGTCTCCATGTTCAACAACAATCAAGCTCTTCTATCTACAGGATGTCACGCCAGTGGCTCTGTGGCTTTGCTCTTCTTCATGTTTGAGCAATGGACCTGCAGCATCTACTGGTGGATCTTTGGCTTCTGTAGTGTGATTCCAGCACTATATGAGATGATCCTTTTTGTTGTAGTGTTTGGATTTAAGAGGAAACCTCTATGAGGATCTCTGCCCTCTCTATTGTCCTTTCATGACTGACGTACCAGAATATCCTGAAACCAGAATAATACTCACTGGCACTATAAATAAGTGTTTTCCATGAGTTCTTAGAAAGCTAAATTATGTTTGAAAGCTTTCGGATGGTTTCAACCTGTTGACTAATTTACTTCTTGAAATCATTGCATTTTGTACACATTTAGATGAATTAAAGCATCTTGTATTTTGCTACAAA

Function

symbol description
tmem107 Predicted to be involved in non-motile cilium assembly and protein localization to ciliary transition zone. Predicted to act upstream of or within cell projection organization. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of MKS complex. Human ortholog(s) of this gene implicated in Meckel syndrome 13 and orofaciodigital syndrome XVI. Orthologous to human TMEM107 (transmembrane protein 107).
tmem107l Predicted to be involved in non-motile cilium assembly and protein localization to ciliary transition zone. Predicted to act upstream of or within cell projection organization. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of MKS complex. Human ortholog(s) of this gene implicated in Meckel syndrome 13 and orofaciodigital syndrome XVI. Orthologous to human TMEM107 (transmembrane protein 107).

NR:

description
PREDICTED: transmembrane protein 107-like isoform X1

GO: NA

KEGG:

id description
K22764 TMEM107; transmembrane protein 107

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225228.1 True 939 mRNA 0.43 5 16399805 16401705
XM_043225229.1 False 924 mRNA 0.43 5 16399805 16401705
XM_043225230.1 False 849 mRNA 0.43 6 16399805 16401705
XM_043225231.1 False 720 mRNA 0.44 6 16399805 16401697

Neighbor

gene id symbol gene type direction distance location
c1ql4a LOC107716093,LOC107708794,LOC107681949,LOC107571784,LOC107695791,LOC107586535 coding downstream 22997 16359689 ~ 16376808 (-)
neurod4 LOC107716220,LOC107695793,LOC107586565,LOC107683357,LOC107571777,LOC107708795 coding downstream 55118 16341446 ~ 16344687 (-)
znf385a LOC107695795,LOC107716219,LOC107586538,LOC107570601,LOC107708851,LOC107681944 coding downstream 68133 16259075 ~ 16331672 (-)
b4galnt1a b4galnt1a,LOC107708855,LOC107681939,LOC107586541,LOC107716216,LOC107570598,LOC107695798 coding downstream 165231 16222809 ~ 16234574 (-)
sp5l sp5l,LOC107708798,LOC107681947,LOC107695752,LOC107586542,LOC107571725,LOC108276147,LOC108432429 coding downstream 207127 16189431 ~ 16192678 (-)
ribc1 LOC107681983,LOC107708847,LOC107570642,LOC107695788,LOC107586532,LOC107716094 coding upstream 86521 16488226 ~ 16505803 (-)
LOC122328366 LOC107708845,LOC107682000,LOC107570669,LOC107716098,LOC107695785,LOC107586560,LOC107586530 coding upstream 139809 16541514 ~ 16545688 (-)
LOC122328572 acvr1ba,LOC107708859,LOC107570552,LOC107681940,LOC107716207,LOC107563637,LOC107695803 coding upstream 207773 16609478 ~ 16616339 (-)
LOC122329052 LOC107716220,LOC107695793,LOC107586565,LOC107683357,LOC107571777,LOC107708795 coding upstream 272532 16674237 ~ 16677367 (-)
LOC122329053 neurog1,LOC107598364,LOC107741101,LOC107664747,LOC107710304,LOC107662038,LOC107563607 coding upstream 278601 16680306 ~ 16681688 (-)
G158333 NA non-coding downstream 152512 16247016 ~ 16247293 (-)
G158284 NA non-coding downstream 281591 16117881 ~ 16118214 (-)
G158282 NA non-coding downstream 297591 16101625 ~ 16102214 (-)
G158227 NA non-coding downstream 434042 15964753 ~ 15965763 (-)
G158208 NA non-coding downstream 586878 15812281 ~ 15812927 (-)
G158353 NA non-coding upstream 15220 16416925 ~ 16439280 (-)
G158377 NA non-coding upstream 22259 16423964 ~ 16424362 (-)
G158383 NA non-coding upstream 31256 16432961 ~ 16433629 (-)
G158388 NA non-coding upstream 42101 16443806 ~ 16444037 (-)
G158404 NA non-coding upstream 96664 16498369 ~ 16500850 (-)
G158336 LOC107716221,LOC107570608,LOC107586536,LOC106567035 other downstream 41100 16355369 ~ 16358705 (-)
tac3a LOC107708854,LOC107571761,LOC107681951,LOC107586540,LOC107695797 other downstream 156410 16240810 ~ 16243395 (-)
G158288 LOC107708856,LOC107570569,LOC107716212,LOC107681953,LOC107695729 other downstream 229971 16143833 ~ 16169834 (-)
G158231 NA other downstream 390890 16008106 ~ 16008915 (-)
LOC122329227 NA other downstream 682555 15621942 ~ 15717250 (-)
slc48a1a slc48a1a,LOC107671836,LOC107598487,LOC107594008,LOC107756371,LOC107697869,LOC107757747 other upstream 774920 17176625 ~ 17184385 (-)
G158609 NA other upstream 937562 17339267 ~ 17343385 (-)
coq10a si:dkey-190g6.2,LOC107671896,LOC107715030,LOC107598614,LOC107697969,LOC102210977,LOC108425511,LOC102797363 other upstream 1011998 17413703 ~ 17422517 (-)
march9 march9,LOC107593952,LOC107664138,LOC107714987,LOC107706970,LOC107599679,LOC107697857,LOC107088728,LOC108433385,LOC103130462,LOC105930772 other upstream 1644221 18045926 ~ 18058739 (-)
hnrnpa1b hnrnpa1b,LOC107664187,LOC107714994,LOC107707002 other upstream 1829938 18231643 ~ 18235536 (-)

Expression


Co-expression Network